MD13G1105800.v1.1

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011201
Physical Location & Seq
Reverse (-)
7591230 .. 7595881
4652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1105800.v1.1.491

Sequence Viewer

Length: 2463 bp
ATGAACCCGCTGTGCTGCATTGCGCCGGTTTCGATCGATCGGGACCGGGGCACGCCGGTGGCTGCCAAGCAGTCGGGTCAGTGCCAGGTAGCCTCGGAGGCTCCGATCCGGAACGTCAGCTACGGCTCGAAGCCGAGCTACTCGGCTCAGGTCTCGTCGGCCGGGACCGAATCGGACAGGGCTTCCGCCGCCGCGGGCCACGAGGTTGAGGATACGATCAGCGAAGCTAGGGATTCGAAGGTGTTTGGCGGCGGCGTGTGCGGCAGCTTGGCTGGGATTTTGTACAAGTGGGTGAACTACGGGAAGGGGTGGCGGTCGCGGTGGTTTGTGCTCGAAGACGGCGTGTTTTCGTACTACAAGGTTCATGGACCGGACAAGATTTTGGTTAGCCAGGTGAGAGAGAAGGGATTGAGGGTGATCGGAGAGAACTCGCTGAGGTACATGAAGAAGGCGAATTGGGGCAGTAATCGGCTCGGAGGTCCGGCGGCGAGGCCGTGGAAGCCTTTCGGAGAAGTGCATTTGAAGGTCTCTTCAATTCGTGCCAGCAAATCAGATGATAAACGGCTTTCCATATTCACAGGAACTAAAACTCTTCATTTGCGGTGTGTGACCAGAGAGGACCGAGCTACATGGATCGAGGCACTGCTGGGTGCTAAAGATCTTTTCCCTAGAGTGTTTACGAGCAATGATTTGGTACCTTCGGAAGATATAGTTGTTTCAACAGAGAAGCTAAGACTAAGATTAGCACAGGAGGGAATTGGTGAGCCGGTGATCAAAGACTGCGAGTCAATTATGCTCTTAGAAGTGTCAGAGCTTCAAAATCAGTTGAAGGGTCTTCGGCGTAAACATGTGATGCTGTTGGAGTCATTGAGGCAATTAGAGACAGAAAAAATAGAGCTGGAAACTACAGTAGTGGATGAAACAAAGGAGCGTGAGTCATATGGACAGGGGAATGGGAGATTTAGTGATTTCTACTCCGTCTTATCTGAGGGCAGTGCAAGTGATTCCGATGCAGATAACGAAAGTCAAGATGGGGCAGATGTTGAAACAGACGAAGATGAAGGAACATATTTCGATACACATGACATTTTGTCTTCAGAAGCTCTAAGAAGTGCTTCCTATCGGAGTAGAGAAGGCTTGGGAAATGATGCTCAAAGAAGTGCTTCCTGTCGGAGCAAGGAAGGTTTGGGAAATGGTTGTATATTTGAAAGAGATTCTTTCTTTTCTGGTCGATTGCATGGAGTTGAGGAGATCAAGACAATTAAATATCCATATGTGAAAAGGAGGGATGATTTGCCAGAACCCAAGGAGAAAGAGAAGCATATTGGCTTGTGGTCGATTATCAAGGATAATATTGGGAAGGACTTGTCTGGAGTTTGTCTTCCTGTTTATTTTAATGAACCACTCTCATCGTTGCAAAAGTGCTTTGAAGATCTCGAATATTCAAACTTGGTTGATCGAGCATCAGAATGGGGAAAGCAGGGGAATGATTTAATGAGAATTCTAAACGTTGCAGCTTTTGCTGTATCTGGCTATGCATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTCGGGGAGACCTATGAGGCTGACTATCCAGATAAAGGACTTCGTTTTTTCTCTGAAAAGGTGAGTCACCACCCAATGGTTGTTGCTTGTCATTGTGAAGGAAGAGGTTGGAAATTCTGGGCGGAATCCAATCTCAAAGGCAAGTTTTGGGGGCGTTCTATTCAGCTTGATCCTGTGGGTACCCTTTCCTTGCAGTTTGAGGACGGGGAGACATTTCAGTGGAGCAAGGTCACTACCTCTATATACAATATCATACTAGGAAAAATTTATTGTGACCACTACGGCACCATGCGCATCAGGGGCAGTGGCAATTATTCCTGCAAGCTGAAGTTCAAGGAGCAGTCTATCATAGACCGAAATCCACATCAGGTTCATGGATTTGTTCAAGACAATAGAACTGGAGAGAATGTAGCAATGTTGGTGGGTAAGTGGGACGAGGCAATGTACTATGTGCTGGGAGATCCAACTACAAAACCAAATGGTTATGATCCAATGACAGAGGCTGTGCTTCTCTGGGAAAGAGATGACTATGTTACCAAGACAAGATACAATTTCTCCCCTTTTGCAATTTCCCTTAATGAACTGACACCTGGCTTATTGGAGAAGTTACCGCCGACGGACTCAAGGCTAAGGCCAGATCAAAGGCATTTGGAGAATGGTGAATATGAATTGGCAAATGCAGAGAAGCTAAGACTTGAACAGCTTCAAAGACAGGCAAGAAAGTTGCAAGAGAGAGGGTGGCAGCCAAGATGGTTTCGGAAAGACGAGGAGGGTTGTTATAGTTATGTGGGAGGGTATTGGGAAACTAGGGAGAAGAACTGGGATGGAATTCCTGATATTTTTGGCCAGCGTAGCGATTTGCCTTCGTGTTCTGGTGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

821

Amino Acids

92.6

Weight (kDa)

5.74

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 91 - 216 1.3e-07 PH domain
PH_11 PF15413 94 - 216 9.5e-16 Pleckstrin homology domain
Oxysterol_BP PF01237 444 - 797 1.4e-126 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13170 AT1G13170
fragaria_vesca FvH4_4g25220 FvH4_4g25220
malus_domestica MD13G1105800.v1.1 MD16G1106000.v1.1
prunus_persica Prupe.1G240400_v2.0.a1
pyrus_communis pycom13g09180 pycom16g09010
rosa_chinensis RchiOBHm_Chr4g0432411
rosa_laevigata RLG00000003003 RLG00000006845
rosa_multiflora Rmu_sc0001084.1_g000022
rosa_roxburghii Rroxscaffold_5G00373880
rosa_rugosa Rorug04G0258300 Rorug04G0258400
rosa_samantha Rh4BG321800 Rh4DG317500
rosa_wichuraiana Rw4G027300 Rw7G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1871
Acc65I GGTACC 2 cut(s) 694, 1757
AccB1I GGYRCC 3 cut(s) 694, 1757, 1862
AccB7I CCANNNNNTGG 1 cut(s) 1654
AccII CGCG 2 cut(s) 194, 319
AccIII TCCGGA 1 cut(s) 108
AclI AACGTT 1 cut(s) 1509
AclWI GGATC 5 cut(s) 100, 641, 1742, 2033, 2060
AcoI YGGCCR 2 cut(s) 159, 2422
AcsI RAATTY 4 cut(s) 1500, 1691, 1842, 2406
AcuI CTGAAG 2 cut(s) 1080, 1925
AfaI GTAC 6 cut(s) 284, 353, 440, 696, 1759, 2024
AfiI CCNNNNNNNGG 3 cut(s) 1580, 1613, 1654
AflIII ACRYGT 1 cut(s) 847
AhdI GACNNNNNGTC 2 cut(s) 784, 1090
AjnI CCWGG 3 cut(s) 84, 390, 2167
AleI CACNNNNGTG 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 5 cut(s) 157, 532, 875, 1580, 1781
AlwI GGATC 5 cut(s) 100, 641, 1742, 2033, 2060
AlwNI CAGNNNCTG 1 cut(s) 2081
Ama87I CYCGRG 1 cut(s) 1580
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 5 cut(s) 159, 196, 491, 2210, 2422
ApeKI GCWGC 5 cut(s) 15, 62, 264, 1514, 2320
ApoI RAATTY 4 cut(s) 1500, 1691, 1842, 2406
Asp700I GAANNNNTTC 4 cut(s) 503, 1114, 1162, 2280
Asp718I GGTACC 2 cut(s) 694, 1757
AspLEI GCGC 2 cut(s) 25, 1872
AspS9I GGNCC 6 cut(s) 43, 165, 196, 368, 479, 619
AsuC2I CCSGG 2 cut(s) 47, 163
AsuHPI GGTGA 8 cut(s) 304, 406, 427, 773, 781, 1637, 1651, 2249
AsuII TTCGAA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 1580
AvaII GGWCC 5 cut(s) 43, 165, 368, 479, 619
BaeGI GKGCMC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 2424
BanI GGYRCC 3 cut(s) 694, 1757, 1862
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BauI CACGAG 1 cut(s) 200
BbsI GAAGAC 4 cut(s) 342, 827, 1086, 1373
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 5 cut(s) 2, 49, 276, 1526, 2332
BccI CCATC 3 cut(s) 1025, 2322, 2396
BceAI ACGGC 5 cut(s) 139, 355, 478, 578, 1876
BciT130I CCWGG 3 cut(s) 86, 392, 2169
BciVI GTATCC 1 cut(s) 205
BclI TGATCA 1 cut(s) 771
BcnI CCSGG 2 cut(s) 47, 163
BcoDI GTCTC 5 cut(s) 157, 532, 875, 1580, 1781
BfaI CTAG 4 cut(s) 228, 669, 1835, 2385
BfmI CTRYAG 1 cut(s) 906
BfuI GTATCC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 98
BglII AGATCT 2 cut(s) 658, 1432
Bme1390I CCNGG 5 cut(s) 47, 86, 163, 392, 2169
Bme18I GGWCC 5 cut(s) 43, 165, 368, 479, 619
BmeRI GACNNNNNGTC 2 cut(s) 784, 1090
BmeT110I CYCGRG 1 cut(s) 1580
BmgT120I GGNCC 6 cut(s) 43, 165, 196, 368, 479, 619
BmiI GGNNCC 6 cut(s) 44, 102, 166, 696, 1759, 1864
BmrFI CCNGG 5 cut(s) 47, 86, 163, 392, 2169
BmrI ACTGGG 1 cut(s) 2407
BmsI GCATC 6 cut(s) 843, 1000, 1138, 1472, 1547, 1881
BmuI ACTGGG 1 cut(s) 2407
BpiI GAAGAC 4 cut(s) 342, 827, 1086, 1373
BpmI CTGGAG 2 cut(s) 1392, 1998
Bpu10I CCTNAGC 3 cut(s) 147, 434, 2207
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 2185
BpuMI CCSGG 2 cut(s) 47, 163
Bsa29I ATCGAT 1 cut(s) 36
BsaI GGTCTC 3 cut(s) 157, 532, 1580
BsaJI CCNNGG 6 cut(s) 46, 93, 192, 494, 1305, 1579
BsaWI WCCGGW 2 cut(s) 108, 370
BsaXI ACNNNNNCTCC 8 cut(s) 920, 949, 950, 979, 1971, 2001, 2117, 2147
Bsc4I CCNNNNNNNGG 3 cut(s) 1580, 1613, 1654
Bse118I RCCGGY 3 cut(s) 25, 55, 766
Bse1I ACTGG 2 cut(s) 1981, 2402
Bse3DI GCAATG 4 cut(s) 18, 691, 1998, 2025
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 3 cut(s) 86, 392, 2169
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 6 cut(s) 46, 93, 192, 494, 1305, 1579
BseGI GGATG 3 cut(s) 922, 1294, 2407
BseLI CCNNNNNNNGG 3 cut(s) 1580, 1613, 1654
BseMI GCAATG 4 cut(s) 18, 691, 1998, 2025
BseMII CTCAG 3 cut(s) 161, 425, 978
BseNI ACTGG 2 cut(s) 1981, 2402
BseRI GAGGAG 3 cut(s) 1262, 1568, 2360
BseSI GKGCMC 1 cut(s) 53
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 5 cut(s) 2, 49, 276, 1526, 2332
BseYI CCCAGC 3 cut(s) 272, 646, 2032
Bsh1236I CGCG 2 cut(s) 194, 319
Bsh1285I CGRYCG 4 cut(s) 36, 40, 162, 317
BshFI GGCC 5 cut(s) 161, 198, 493, 2212, 2424
BshNI GGYRCC 3 cut(s) 694, 1757, 1862
BshVI ATCGAT 1 cut(s) 36
BsiEI CGRYCG 4 cut(s) 36, 40, 162, 317
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 1580
BsiSI CCGG 8 cut(s) 26, 46, 56, 109, 162, 371, 482, 767
BslFI GGGAC 3 cut(s) 56, 178, 2024
BslI CCNNNNNNNGG 3 cut(s) 1580, 1613, 1654
BsmAI GTCTC 5 cut(s) 157, 532, 875, 1580, 1781
BsmFI GGGAC 3 cut(s) 56, 178, 2024
BsnI GGCC 5 cut(s) 161, 198, 493, 2212, 2424
Bso31I GGTCTC 3 cut(s) 157, 532, 1580
BsoBI CYCGRG 1 cut(s) 1580
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 53, 333
Bsp13I TCCGGA 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 282
BspANI GGCC 5 cut(s) 161, 198, 493, 2212, 2424
BspCNI CTCAG 3 cut(s) 160, 426, 979
BspDI ATCGAT 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 2 cut(s) 194, 319
BspLI GGNNCC 6 cut(s) 44, 102, 166, 696, 1759, 1864
BspPI GGATC 5 cut(s) 100, 641, 1742, 2033, 2060
BspT104I TTCGAA 1 cut(s) 236
BspT107I GGYRCC 3 cut(s) 694, 1757, 1862
BspTNI GGTCTC 3 cut(s) 157, 532, 1580
BsrDI GCAATG 4 cut(s) 18, 691, 1998, 2025
BsrFI RCCGGY 3 cut(s) 25, 55, 766
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 1981, 2402
BssAI RCCGGY 3 cut(s) 25, 55, 766
BssECI CCNNGG 6 cut(s) 46, 93, 192, 494, 1305, 1579
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 1305
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 3 cut(s) 86, 392, 2169
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 4 cut(s) 535, 597, 1675, 2451
BstAPI GCANNNNNTGC 1 cut(s) 1520
BstAUI TGTACA 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 5 cut(s) 53, 196, 544, 1901, 2426
BstDEI CTNAG 9 cut(s) 147, 434, 731, 737, 799, 987, 1106, 2207, 2267
BstDSI CCRYGG 2 cut(s) 192, 494
BstF5I GGATG 3 cut(s) 922, 1294, 2407
BstFNI CGCG 2 cut(s) 194, 319
BstHHI GCGC 2 cut(s) 25, 1872
BstMAI GTCTC 5 cut(s) 157, 532, 875, 1580, 1781
BstMCI CGRYCG 4 cut(s) 36, 40, 162, 317
BstMWI GCNNNNNNNGC 9 cut(s) 98, 188, 258, 261, 499, 1520, 1869, 1878, 2430
BstNI CCWGG 3 cut(s) 86, 392, 2169
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 5 cut(s) 45, 84, 161, 390, 2167
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 1 cut(s) 53
BstUI CGCG 2 cut(s) 194, 319
BstV1I GCAGC 5 cut(s) 2, 49, 276, 1526, 2332
BstV2I GAAGAC 4 cut(s) 342, 827, 1086, 1373
BstX2I RGATCY 3 cut(s) 658, 1432, 2038
BstYI RGATCY 3 cut(s) 658, 1432, 2038
BstZI CGGCCG 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 36
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 5 cut(s) 161, 198, 493, 2212, 2424
BsuTUI ATCGAT 1 cut(s) 36
BtgI CCRYGG 2 cut(s) 192, 494
BtsCI GGATG 3 cut(s) 922, 1294, 2407
BtsI GCAGTG 4 cut(s) 641, 1000, 1562, 1888
BtsIMutI CAGTG 6 cut(s) 86, 641, 1000, 1562, 1802, 1888
Cac8I GCNNGC 5 cut(s) 53, 196, 544, 1901, 2426
CaiI CAGNNNCTG 1 cut(s) 2081
CfoI GCGC 2 cut(s) 25, 1872
Cfr10I RCCGGY 3 cut(s) 25, 55, 766
Cfr13I GGNCC 6 cut(s) 43, 165, 196, 368, 479, 619
Cfr42I CCGCGG 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 36
Csp6I GTAC 6 cut(s) 283, 352, 439, 695, 1758, 2023
CspCI CAANNNNNGTGG 2 cut(s) 1980, 2015
CviAII CATG 8 cut(s) 365, 442, 630, 848, 1082, 1238, 1867, 1952
CviQI GTAC 6 cut(s) 283, 352, 439, 695, 1758, 2023
DdeI CTNAG 9 cut(s) 147, 434, 731, 737, 799, 987, 1106, 2207, 2267
DriI GACNNNNNGTC 2 cut(s) 784, 1090
EaeI YGGCCR 2 cut(s) 159, 2422
EagI CGGCCG 1 cut(s) 159
Eam1104I CTCTTC 4 cut(s) 535, 597, 1675, 2451
Eam1105I GACNNNNNGTC 2 cut(s) 784, 1090
EarI CTCTTC 4 cut(s) 535, 597, 1675, 2451
EciI GGCGGA 2 cut(s) 175, 1715
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 1305
Eco31I GGTCTC 3 cut(s) 157, 532, 1580
Eco47I GGWCC 5 cut(s) 43, 165, 368, 479, 619
Eco52I CGGCCG 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 1080, 1925
Eco88I CYCGRG 1 cut(s) 1580
EcoRI GAATTC 2 cut(s) 1500, 2406
EcoRII CCWGG 3 cut(s) 84, 390, 2167
EcoT14I CCWWGG 1 cut(s) 1305
EcoT22I ATGCAT 1 cut(s) 1540
ErhI CCWWGG 1 cut(s) 1305
FaeI CATG 8 cut(s) 368, 445, 633, 851, 1085, 1241, 1870, 1955
FalI AAGNNNNNCTT 6 cut(s) 1099, 1131, 1147, 1179, 1201, 1233
FaqI GGGAC 3 cut(s) 56, 178, 2024
FatI CATG 8 cut(s) 364, 441, 629, 847, 1081, 1237, 1866, 1951
FauI CCCGC 2 cut(s) 15, 187
FauNDI CATATG 2 cut(s) 940, 1273
FbaI TGATCA 1 cut(s) 771
FokI GGATG 3 cut(s) 929, 1301, 2414
FspAI RTGCGCAY 1 cut(s) 1871
FspBI CTAG 4 cut(s) 228, 669, 1835, 2385
FspI TGCGCA 1 cut(s) 1871
GlaI GCGC 2 cut(s) 24, 1871
GsaI CCCAGC 3 cut(s) 276, 650, 2036
GsuI CTGGAG 2 cut(s) 1392, 1998
HaeIII GGCC 5 cut(s) 161, 198, 493, 2212, 2424
HapII CCGG 8 cut(s) 26, 46, 56, 109, 162, 371, 482, 767
HhaI GCGC 2 cut(s) 25, 1872
Hin1II CATG 8 cut(s) 368, 445, 633, 851, 1085, 1241, 1870, 1955
Hin6I GCGC 2 cut(s) 23, 1870
HinP1I GCGC 2 cut(s) 23, 1870
HpaII CCGG 8 cut(s) 26, 46, 56, 109, 162, 371, 482, 767
HphI GGTGA 8 cut(s) 304, 406, 427, 773, 781, 1637, 1651, 2249
Hpy166II GTNNAC 3 cut(s) 295, 678, 845
Hpy188III TCNNGA 9 cut(s) 41, 109, 1028, 1255, 1371, 1436, 1607, 1964, 2411
Hpy8I GTNNAC 3 cut(s) 295, 678, 845
Hpy99I CGWCG 2 cut(s) 160, 2197
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 2 cut(s) 114, 1509
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 188, 258, 261, 499, 1520, 1869, 1878, 2430
HpyF3I CTNAG 9 cut(s) 147, 434, 731, 737, 799, 987, 1106, 2207, 2267
HpySE526I ACGT 2 cut(s) 114, 1509
Hsp92II CATG 8 cut(s) 368, 445, 633, 851, 1085, 1241, 1870, 1955
HspAI GCGC 2 cut(s) 23, 1870
Kpn2I TCCGGA 1 cut(s) 108
KpnI GGTACC 2 cut(s) 698, 1761
Ksp22I TGATCA 1 cut(s) 771
KspI CCGCGG 1 cut(s) 195
LmnI GCTCC 5 cut(s) 106, 928, 1173, 1800, 1915
Lsp1109I GCAGC 5 cut(s) 2, 49, 276, 1526, 2332
LweI GCATC 6 cut(s) 843, 1000, 1138, 1472, 1547, 1881
MaeI CTAG 4 cut(s) 228, 669, 1835, 2385
MaeII ACGT 2 cut(s) 114, 1509
MaeIII GTNAC 6 cut(s) 607, 1643, 1807, 1850, 2110, 2184
MflI RGATCY 3 cut(s) 658, 1432, 2038
MhlI GDGCHC 2 cut(s) 53, 333
MlsI TGGCCA 1 cut(s) 2424
MluNI TGGCCA 1 cut(s) 2424
MlyI GAGTC 5 cut(s) 794, 872, 944, 1651, 2192
MmeI TCCRAC 4 cut(s) 840, 1151, 1667, 2066
Mox20I TGGCCA 1 cut(s) 2424
Mph1103I ATGCAT 1 cut(s) 1540
MroI TCCGGA 1 cut(s) 108
MroXI GAANNNNTTC 4 cut(s) 503, 1114, 1162, 2280
MscI TGGCCA 1 cut(s) 2424
MseI TTAA 5 cut(s) 1263, 1395, 1493, 1569, 2154
MslI CAYNNNNRTG 3 cut(s) 56, 1468, 1795
Msp20I TGGCCA 1 cut(s) 2424
MspA1I CMGCKG 2 cut(s) 10, 194
MspI CCGG 8 cut(s) 26, 46, 56, 109, 162, 371, 482, 767
MspR9I CCNGG 5 cut(s) 47, 86, 163, 392, 2169
MvaI CCWGG 3 cut(s) 86, 392, 2169
MvnI CGCG 2 cut(s) 194, 319
MwoI GCNNNNNNNGC 9 cut(s) 98, 188, 258, 261, 499, 1520, 1869, 1878, 2430
NciI CCSGG 2 cut(s) 47, 163
NdeI CATATG 2 cut(s) 940, 1273
NlaIII CATG 8 cut(s) 368, 445, 633, 851, 1085, 1241, 1870, 1955
NlaIV GGNNCC 6 cut(s) 44, 102, 166, 696, 1759, 1864
NmeAIII GCCGAG 2 cut(s) 122, 159
NmuCI GTSAC 4 cut(s) 607, 1643, 1807, 1850
NsbI TGCGCA 1 cut(s) 1871
NsiI ATGCAT 1 cut(s) 1540
NspI RCATGY 1 cut(s) 851
NspV TTCGAA 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 56
PciI ACATGT 1 cut(s) 847
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 339
PdmI GAANNNNTTC 4 cut(s) 503, 1114, 1162, 2280
PfeI GAWTC 5 cut(s) 170, 233, 1004, 1214, 1703
PflMI CCANNNNNTGG 1 cut(s) 1654
Ple19I CGATCG 2 cut(s) 36, 40
PleI GAGTC 5 cut(s) 793, 871, 943, 1650, 2192
PpsI GAGTC 5 cut(s) 793, 871, 943, 1650, 2192
PscI ACATGT 1 cut(s) 847
Psp1406I AACGTT 1 cut(s) 1509
Psp6I CCWGG 3 cut(s) 84, 390, 2167
PspFI CCCAGC 3 cut(s) 272, 646, 2032
PspGI CCWGG 3 cut(s) 84, 390, 2167
PspN4I GGNNCC 6 cut(s) 44, 102, 166, 696, 1759, 1864
PspPI GGNCC 6 cut(s) 43, 165, 196, 368, 479, 619
PsrI GAACNNNNNNTAC 2 cut(s) 104, 136
PstNI CAGNNNCTG 1 cut(s) 2081
PsuI RGATCY 3 cut(s) 658, 1432, 2038
PvuI CGATCG 2 cut(s) 36, 40
RsaI GTAC 6 cut(s) 284, 353, 440, 696, 1759, 2024
RsaNI GTAC 6 cut(s) 283, 352, 439, 695, 1758, 2023
RseI CAYNNNNRTG 3 cut(s) 56, 1468, 1795
SacII CCGCGG 1 cut(s) 195
SaqAI TTAA 5 cut(s) 1263, 1395, 1493, 1569, 2154
Sau96I GGNCC 6 cut(s) 43, 165, 196, 368, 479, 619
SchI GAGTC 5 cut(s) 794, 872, 944, 1651, 2192
ScrFI CCNGG 5 cut(s) 47, 86, 163, 392, 2169
SduI GDGCHC 2 cut(s) 53, 333
SfaNI GCATC 6 cut(s) 843, 1000, 1138, 1472, 1547, 1881
SfcI CTRYAG 1 cut(s) 906
Sfr303I CCGCGG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 236
SgrAI CRCCGGYG 1 cut(s) 55
SgrBI CCGCGG 1 cut(s) 195
SinI GGWCC 5 cut(s) 43, 165, 368, 479, 619
SmiMI CAYNNNNRTG 3 cut(s) 56, 1468, 1795
SmlI CTYRAG 1 cut(s) 2200
SmoI CTYRAG 1 cut(s) 2200
SspI AATATT 2 cut(s) 1354, 1442
SspMI CTAG 4 cut(s) 228, 669, 1835, 2385
StyD4I CCNGG 5 cut(s) 45, 84, 161, 390, 2167
StyI CCWWGG 1 cut(s) 1305
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 2 cut(s) 117, 1512
TaqII GACCGA 3 cut(s) 182, 636, 1947
TatI WGTACW 2 cut(s) 282, 2022
TauI GCSGC 6 cut(s) 191, 194, 252, 255, 264, 488
TfiI GAWTC 5 cut(s) 170, 233, 1004, 1214, 1703
Tru1I TTAA 5 cut(s) 1263, 1395, 1493, 1569, 2154
Tru9I TTAA 5 cut(s) 1263, 1395, 1493, 1569, 2154
TscAI CASTG 6 cut(s) 86, 648, 1000, 1562, 1802, 1888
TseFI GTSAC 4 cut(s) 607, 1643, 1807, 1850
TseI GCWGC 5 cut(s) 15, 62, 264, 1514, 2320
Tsp45I GTSAC 4 cut(s) 607, 1643, 1807, 1850
TspGWI ACGGA 2 cut(s) 967, 2210
TspRI CASTG 6 cut(s) 86, 648, 1000, 1562, 1802, 1888
Van91I CCANNNNNTGG 1 cut(s) 1654
VpaK11BI GGWCC 5 cut(s) 43, 165, 368, 479, 619
XapI RAATTY 4 cut(s) 1500, 1691, 1842, 2406
XceI RCATGY 1 cut(s) 851
XmnI GAANNNNTTC 4 cut(s) 503, 1114, 1162, 2280
XspI CTAG 4 cut(s) 228, 669, 1835, 2385
Zsp2I ATGCAT 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.