RLG00000006845

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011201
Physical Location & Seq
Reverse (-)
11019324 .. 11024346
5023 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006845

Sequence Viewer

Length: 2487 bp
ATGAACCCGCTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCAGGCCGACCGGGTCACGGCGAAGCAGTCCGGTCACTACCAGCTCGGACTCGACGAGGCGGTTCCGGTTCGAAACGTCAGCTACGGCTCGAAGCCGAGCTACTCCGCTCAGGTCTCGTCGGCGGGGACCGAATCGGACAGAGCCTCGTTCGCCACGGCGCAACGCGAGGTTGAGGAAGCGTTCTGCGAGCCGAGGGATTCGAAGGTGTTCGGCTTCAGTGGAGGCGTCGCCGGAATTCTGTACAAGTGGGTGAACTACGGAAAGGGGTGGCGGTCGAGGTGGTTTCTGCTGGAAGACGGCGTGCTTTCGTATTACAAGGTTCATGGACCGGACAAGATTCTGATGAGCCCGGCCAGAGAGAAAGGCGTGACGGTGATCGGAGAGGACTCGTTGAGGTATATGAAGAAGGCTAATTGGAATAGAAATCGGCTTGGCTTGCCGGCGAGGAGGCCGTGCAAGCCTTTCGGCGAAGTGCATTTGAAGGTCTCTTCAATTCGTGCCAGCAAATCAGATGATAAAAGGCTTTCCATATTCACAGGAACTAAAACTCTTCACTTGCGTTGTTTATCTAGAGAGGACAGAGCTGCATGGATTGAGGCATTGCTGGCTGCTAAAGATCTTTTCCCCAGAGTGTTGTCAAGCAATGATTTAGTGCCTTCAGAAGATATAGTTGTTTCAACAGAGAAGTTACGATTAAGATTGGCACAGGAGGGAGTTGGTGAGCCTGTTATCAAAGACTGCGAGTCAATTATGCTTTTAGAAGTCTCAGAGCTGCAAAACCAGTTGAAGTCTCTTCAGAGTAAACATGTTATGTTGTTAGACACATTGAGGCAATTGGAGACAGAGAAAATAGAGCTGGAAACTACAGTAGTGGACGAAACAAAGGAGCGTGAGTCATACTGCAGTCAGGGCAATAGGAGACATAGTGATTTTTATTCCGTCATGTCAGAGGGCAGTGGAAGTGATTCTGATGCAGAAAATGAAAGTCAAGATGGAGGAGATGTTGAAACAGATGAAGATGAAGGAACATACTTTGATACTTATGATATTTTGTCTTCAGATGCTTTAAGAAGTGCATCCTACCGGAGTCGAGAAGATGCTTTAAGAAGTGCATCCTATCGGAGTAGAGAAGATGCTTTAAGAAGTGCTTCCTATCGGAGTAGGGATGGTTTGGGAAACGCTGGTGGAGATTCTCTCTTTTCTGATCGATTGCATGCAGTTCAGGAGATCATGACAGTTAAATATCCATCTGTGAAAAGGAGGGATAATTTGCCAGAACCAAAGGAGAAAGATAAGCCTATTGGCTTGTGGTCAATTATCAAGGACAATATTGGAAAGGACTTATCTGGAGTTTGTCTTCCTGTTTATTTTAATGAACCACTCTCTTCATTGCAAAAGTGCTTTGAAGATCTGGAGTATTCCTACTTGGTAGATCGAGCATTGGAATGGGGAAAGCAGGGGAATGACTTGATGAGAATTCTCCACGTTGCAGCTTTTGCTGTATCTGGTTATGCATCAACAGAAGGTCGGCAGTGCAAACCCTTCAATCCTCTCCTGGGGGAGACCTATGAGGCCGATTACCCGGATAAAGGACTTCGTTTCTTTTCTGAAAAGGTGAGTCACCACCCAATGATTGTTGCCTGTCACTGTCAAGGAAGAAATTGGAAATTTTGGGCGGACTCCAACCTTAAAGGCAAGTTTTGGGGGCGTTCTATACAGCTTGATCCTGTGGGTCTGCTTAACTTGCAGTTTGAGGATGGGGAAACATTTCAGTGGAGCAAGGTCACTACTTCCATATACAATATCATACTAGGGAAAATTTACTGTGACCATTATGGCACCATGCGCATCAAGGGAAGTGGAAATTACTCATGTAAGCTAAAGTTCAAGGAGCAGTCTATCATAGACCGAAACCCACATCAGGTTCATGGATTTGTTCAAGACAATCGAACTGGAGAGAAAGTAGCAATGTTGATGGGGAAGTGGGATGAGGCAATGTACTATGTTCTAGGAGATCCAACCACAAAACCAAAGGGTTATGATCCAATGACAGAGGCTGTGCTGCTCTGGGAAAGGGAAAACTACGTTACCAAGACAAGATATAATTTTTCTCCTTTCGCAATATCCCTGAATGAATTAACACCTGGACTATTGGAGAAATTGCCTCCAACAGACTCGAGGCTGAGGCCAGATCAAAGACATTTAGAAAATGGTGAATATGAATTGGCAAATGCAGAAAAACTAAGACTTGAACAGCTACAGAGACAGGCGAGGAAGTTGCAAGAGAGGGGCTGGCAGCCAAGATGGTTTCAAAGAGATCAGGACGGTTGTTATAATTACACGGGTGGGTATTGGGAAACTAGGGAGAAAAACAATTGGGATGGAATTCCTGATATTTTTGGCCAGAGTAGTGATACGCCCTCAAGTTCTGTTGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

829

Amino Acids

94.15

Weight (kDa)

5.85

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 93 - 219 1.9e-07 PH domain
PH_11 PF15413 94 - 217 1.9e-16 Pleckstrin homology domain
Oxysterol_BP PF01237 451 - 804 7.2e-127 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13170 AT1G13170
fragaria_vesca FvH4_4g25220 FvH4_4g25220
malus_domestica MD13G1105800.v1.1 MD16G1106000.v1.1
prunus_persica Prupe.1G240400_v2.0.a1
pyrus_communis pycom13g09180 pycom16g09010
rosa_chinensis RchiOBHm_Chr4g0432411
rosa_laevigata RLG00000003003 RLG00000006845
rosa_multiflora Rmu_sc0001084.1_g000022
rosa_roxburghii Rroxscaffold_5G00373880
rosa_rugosa Rorug04G0258300 Rorug04G0258400
rosa_samantha Rh4BG321800 Rh4DG317500
rosa_wichuraiana Rw4G027300 Rw7G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2379
Acc16I TGCGCA 1 cut(s) 1892
AccB1I GGYRCC 1 cut(s) 1883
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 210
AciI CCGC 6 cut(s) 8, 104, 150, 167, 316, 1721
AclWI GGATC 3 cut(s) 1763, 2054, 2081
AcoI YGGCCR 2 cut(s) 396, 2446
AcsI RAATTY 5 cut(s) 279, 1521, 1712, 1863, 2430
AcuI CTGAAG 4 cut(s) 244, 687, 824, 1086
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 287, 2045
AfiI CCNNNNNNNGG 4 cut(s) 61, 1601, 1634, 1966
AflIII ACRYGT 1 cut(s) 850
AhdI GACNNNNNGTC 1 cut(s) 787
AjnI CCWGG 3 cut(s) 45, 1599, 2188
Alw26I GTCTC 8 cut(s) 163, 535, 814, 840, 878, 958, 1601, 2302
AlwI GGATC 3 cut(s) 1763, 2054, 2081
AlwNI CAGNNNCTG 1 cut(s) 2102
Ama87I CYCGRG 1 cut(s) 2221
AoxI GGCC 6 cut(s) 48, 396, 494, 1617, 2231, 2446
ApeKI GCWGC 7 cut(s) 15, 629, 653, 817, 1535, 2107, 2341
ApoI RAATTY 5 cut(s) 279, 1521, 1712, 1863, 2430
Asp700I GAANNNNTTC 4 cut(s) 251, 1009, 1192, 1812
AspLEI GCGC 2 cut(s) 205, 1893
AspS9I GGNCC 3 cut(s) 43, 171, 371
AsuC2I CCSGG 3 cut(s) 56, 395, 1628
AsuHPI GGTGA 6 cut(s) 307, 430, 776, 1658, 1672, 2270
AsuII TTCGAA 2 cut(s) 115, 245
AvaI CYCGRG 1 cut(s) 2221
AvaII GGWCC 3 cut(s) 43, 171, 371
BalI TGGCCA 1 cut(s) 2448
BanI GGYRCC 1 cut(s) 1883
BanII GRGCYC 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 3 cut(s) 345, 1092, 1394
BbvCI CCTCAGC 1 cut(s) 2228
BbvI GCAGC 7 cut(s) 2, 616, 640, 804, 1547, 2094, 2353
BccI CCATC 7 cut(s) 1031, 1205, 1300, 1796, 2014, 2343, 2420
BceAI ACGGC 5 cut(s) 78, 145, 216, 358, 481
BcgI CGANNNNNNTGC 4 cut(s) 490, 524, 2305, 2339
BciT130I CCWGG 3 cut(s) 47, 1601, 2190
BcnI CCSGG 3 cut(s) 56, 395, 1628
BcoDI GTCTC 8 cut(s) 163, 535, 814, 840, 878, 958, 1601, 2302
BfaI CTAG 4 cut(s) 615, 1856, 2054, 2406
BfmI CTRYAG 3 cut(s) 909, 946, 2303
BglII AGATCT 2 cut(s) 661, 1453
BisI GCNGC 7 cut(s) 16, 630, 654, 818, 1536, 2108, 2342
BlsI GCNGC 7 cut(s) 17, 631, 655, 819, 1537, 2109, 2343
Bme1390I CCNGG 6 cut(s) 47, 56, 395, 1601, 1628, 2190
Bme18I GGWCC 3 cut(s) 43, 171, 371
BmeRI GACNNNNNGTC 1 cut(s) 787
BmeT110I CYCGRG 1 cut(s) 2221
BmgT120I GGNCC 3 cut(s) 43, 171, 371
BmiI GGNNCC 4 cut(s) 44, 108, 172, 1885
BmrFI CCNGG 6 cut(s) 47, 56, 395, 1601, 1628, 2190
BmsI GCATC 8 cut(s) 1006, 1096, 1130, 1132, 1166, 1168, 1568, 1902
BpiI GAAGAC 3 cut(s) 345, 1092, 1394
BplI GAGNNNNNCTC 2 cut(s) 1224, 1256
BpmI CTGGAG 3 cut(s) 1413, 1478, 2019
Bpu10I CCTNAGC 2 cut(s) 153, 2228
Bpu14I TTCGAA 2 cut(s) 115, 245
BpuEI CTTGAG 1 cut(s) 2452
BpuMI CCSGG 3 cut(s) 56, 395, 1628
Bsa29I ATCGAT 2 cut(s) 36, 1252
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 3 cut(s) 163, 535, 1601
BsaJI CCNNGG 3 cut(s) 198, 236, 1600
BsaWI WCCGGW 5 cut(s) 25, 74, 109, 373, 1128
BsaXI ACNNNNNCTCC 8 cut(s) 923, 953, 955, 985, 1032, 1062, 1992, 2022
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 1601, 1634, 1966
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 826, 2002
Bse3DI GCAATG 6 cut(s) 18, 644, 694, 1433, 2019, 2046
BseBI CCWGG 3 cut(s) 47, 1601, 2190
BseCI ATCGAT 2 cut(s) 36, 1252
BseDI CCNNGG 3 cut(s) 198, 236, 1600
BseGI GGATG 6 cut(s) 1121, 1157, 1216, 1807, 2038, 2431
BseLI CCNNNNNNNGG 4 cut(s) 61, 1601, 1634, 1966
BseMI GCAATG 6 cut(s) 18, 644, 694, 1433, 2019, 2046
BseMII CTCAG 3 cut(s) 167, 825, 2219
BseNI ACTGG 2 cut(s) 826, 2002
BseRI GAGGAG 2 cut(s) 505, 1056
BseXI GCAGC 7 cut(s) 2, 616, 640, 804, 1547, 2094, 2353
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 4 cut(s) 36, 40, 55, 320
BshFI GGCC 6 cut(s) 50, 398, 496, 1619, 2233, 2448
BshNI GGYRCC 1 cut(s) 1883
BshVI ATCGAT 2 cut(s) 36, 1252
BsiEI CGRYCG 4 cut(s) 36, 40, 55, 320
BsiHKCI CYCGRG 1 cut(s) 2221
BslFI GGGAC 2 cut(s) 56, 184
BslI CCNNNNNNNGG 4 cut(s) 61, 1601, 1634, 1966
BsmAI GTCTC 8 cut(s) 163, 535, 814, 840, 878, 958, 1601, 2302
BsmFI GGGAC 2 cut(s) 56, 184
BsnI GGCC 6 cut(s) 50, 398, 496, 1619, 2233, 2448
Bso31I GGTCTC 3 cut(s) 163, 535, 1601
BsoBI CYCGRG 1 cut(s) 2221
Bsp119I TTCGAA 2 cut(s) 115, 245
Bsp1286I GDGCHC 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 285
BspACI CCGC 6 cut(s) 8, 104, 150, 167, 316, 1721
BspANI GGCC 6 cut(s) 50, 398, 496, 1619, 2233, 2448
BspCNI CTCAG 3 cut(s) 166, 824, 2220
BspDI ATCGAT 2 cut(s) 36, 1252
BspFNI CGCG 1 cut(s) 210
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 4 cut(s) 44, 108, 172, 1885
BspMAI CTGCAG 1 cut(s) 950
BspPI GGATC 3 cut(s) 1763, 2054, 2081
BspT104I TTCGAA 2 cut(s) 115, 245
BspT107I GGYRCC 1 cut(s) 1883
BspTNI GGTCTC 3 cut(s) 163, 535, 1601
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 6 cut(s) 18, 644, 694, 1433, 2019, 2046
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 2 cut(s) 826, 2002
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 198, 236, 1600
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 3 cut(s) 47, 1601, 2190
Bst4CI ACNGT 6 cut(s) 418, 913, 1282, 1694, 1871, 2372
Bst6I CTCTTC 5 cut(s) 538, 600, 843, 1435, 2475
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 1541
BstAUI TGTACA 1 cut(s) 285
BstBI TTCGAA 2 cut(s) 115, 245
BstC8I GCNNGC 9 cut(s) 233, 347, 482, 486, 503, 547, 651, 1260, 2339
BstDEI CTNAG 4 cut(s) 153, 811, 2228, 2288
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 6 cut(s) 1121, 1157, 1216, 1807, 2038, 2431
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 2 cut(s) 205, 1893
BstMAI GTCTC 8 cut(s) 163, 535, 814, 840, 878, 958, 1601, 2302
BstMCI CGRYCG 4 cut(s) 36, 40, 55, 320
BstMWI GCNNNNNNNGC 8 cut(s) 194, 481, 502, 650, 954, 1541, 1789, 1890
BstNI CCWGG 3 cut(s) 47, 1601, 2190
BstNSI RCATGY 2 cut(s) 854, 1262
BstSCI CCNGG 6 cut(s) 45, 54, 393, 1599, 1626, 2188
BstSFI CTRYAG 3 cut(s) 909, 946, 2303
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 7 cut(s) 2, 616, 640, 804, 1547, 2094, 2353
BstV2I GAAGAC 3 cut(s) 345, 1092, 1394
BstX2I RGATCY 3 cut(s) 661, 1453, 2059
BstYI RGATCY 3 cut(s) 661, 1453, 2059
Bsu15I ATCGAT 2 cut(s) 36, 1252
BsuRI GGCC 6 cut(s) 50, 398, 496, 1619, 2233, 2448
BsuTUI ATCGAT 2 cut(s) 36, 1252
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 6 cut(s) 1121, 1157, 1216, 1807, 2038, 2431
BtsI GCAGTG 2 cut(s) 1006, 1583
BtsIMutI CAGTG 5 cut(s) 268, 1006, 1583, 1690, 1823
Cac8I GCNNGC 9 cut(s) 233, 347, 482, 486, 503, 547, 651, 1260, 2339
CaiI CAGNNNCTG 1 cut(s) 2102
CciI TCATGA 1 cut(s) 1275
CfoI GCGC 2 cut(s) 205, 1893
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 3 cut(s) 43, 171, 371
ClaI ATCGAT 2 cut(s) 36, 1252
CseI GACGC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 286, 2044
CspCI CAANNNNNGTGG 2 cut(s) 1885, 1920
CviAII CATG 9 cut(s) 368, 633, 851, 988, 1259, 1276, 1888, 1917, 1973
CviQI GTAC 2 cut(s) 286, 2044
DdeI CTNAG 4 cut(s) 153, 811, 2228, 2288
DriI GACNNNNNGTC 1 cut(s) 787
EaeI YGGCCR 2 cut(s) 396, 2446
Eam1104I CTCTTC 5 cut(s) 538, 600, 843, 1435, 2475
Eam1105I GACNNNNNGTC 1 cut(s) 787
EarI CTCTTC 5 cut(s) 538, 600, 843, 1435, 2475
EciI GGCGGA 1 cut(s) 1736
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 3 cut(s) 163, 535, 1601
Eco47I GGWCC 3 cut(s) 43, 171, 371
Eco57I CTGAAG 4 cut(s) 244, 687, 824, 1086
Eco88I CYCGRG 1 cut(s) 2221
EcoRI GAATTC 3 cut(s) 279, 1521, 2430
EcoRII CCWGG 3 cut(s) 45, 1599, 2188
EcoT22I ATGCAT 1 cut(s) 1561
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 9 cut(s) 371, 636, 854, 991, 1262, 1279, 1891, 1920, 1976
FalI AAGNNNNNCTT 2 cut(s) 1177, 1209
FaqI GGGAC 2 cut(s) 56, 184
FatI CATG 9 cut(s) 367, 632, 850, 987, 1258, 1275, 1887, 1916, 1972
FauI CCCGC 2 cut(s) 15, 160
Fnu4HI GCNGC 7 cut(s) 16, 630, 654, 818, 1536, 2108, 2342
FokI GGATG 6 cut(s) 1108, 1144, 1223, 1814, 2045, 2438
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 7 cut(s) 16, 630, 654, 818, 1536, 2108, 2342
FspAI RTGCGCAY 1 cut(s) 1892
FspBI CTAG 4 cut(s) 615, 1856, 2054, 2406
FspI TGCGCA 1 cut(s) 1892
GlaI GCGC 2 cut(s) 204, 1892
GluI GCNGC 7 cut(s) 16, 630, 654, 818, 1536, 2108, 2342
GsuI CTGGAG 3 cut(s) 1413, 1478, 2019
HaeIII GGCC 6 cut(s) 50, 398, 496, 1619, 2233, 2448
HgaI GACGC 1 cut(s) 259
HhaI GCGC 2 cut(s) 205, 1893
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 9 cut(s) 371, 636, 854, 991, 1262, 1279, 1891, 1920, 1976
Hin6I GCGC 2 cut(s) 203, 1891
HinP1I GCGC 2 cut(s) 203, 1891
HphI GGTGA 6 cut(s) 307, 430, 776, 1658, 1672, 2270
Hpy166II GTNNAC 3 cut(s) 298, 848, 919
Hpy8I GTNNAC 3 cut(s) 298, 848, 919
Hpy99I CGWCG 3 cut(s) 101, 166, 275
HpyAV CCTTC 7 cut(s) 241, 445, 520, 711, 1061, 1562, 1597
HpyCH4III ACNGT 6 cut(s) 418, 913, 1282, 1694, 1871, 2372
HpyCH4IV ACGT 3 cut(s) 120, 1530, 2130
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 481, 502, 650, 954, 1541, 1789, 1890
HpyF3I CTNAG 4 cut(s) 153, 811, 2228, 2288
HpySE526I ACGT 3 cut(s) 120, 1530, 2130
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 9 cut(s) 371, 636, 854, 991, 1262, 1279, 1891, 1920, 1976
HspAI GCGC 2 cut(s) 203, 1891
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
LmnI GCTCC 4 cut(s) 28, 931, 1821, 1936
Lsp1109I GCAGC 7 cut(s) 2, 616, 640, 804, 1547, 2094, 2353
LweI GCATC 8 cut(s) 1006, 1096, 1130, 1132, 1166, 1168, 1568, 1902
MaeI CTAG 4 cut(s) 615, 1856, 2054, 2406
MaeII ACGT 3 cut(s) 120, 1530, 2130
MaeIII GTNAC 9 cut(s) 58, 77, 412, 732, 1664, 1688, 1828, 1871, 2131
MbiI CCGCTC 1 cut(s) 152
MfeI CAATTG 2 cut(s) 878, 2419
MflI RGATCY 3 cut(s) 661, 1453, 2059
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 2448
MluNI TGGCCA 1 cut(s) 2448
MlyI GAGTC 8 cut(s) 87, 425, 797, 947, 1141, 1672, 1718, 2213
MmeI TCCRAC 3 cut(s) 1752, 2087, 2237
Mox20I TGGCCA 1 cut(s) 2448
Mph1103I ATGCAT 1 cut(s) 1561
MroNI GCCGGC 1 cut(s) 484
MroXI GAANNNNTTC 4 cut(s) 251, 1009, 1192, 1812
MscI TGGCCA 1 cut(s) 2448
MseI TTAA 9 cut(s) 740, 1112, 1148, 1184, 1284, 1416, 1734, 1785, 2183
MslI CAYNNNNRTG 2 cut(s) 1489, 1816
Msp20I TGGCCA 1 cut(s) 2448
MspA1I CMGCKG 1 cut(s) 10
MspR9I CCNGG 6 cut(s) 47, 56, 395, 1601, 1628, 2190
MunI CAATTG 2 cut(s) 878, 2419
MvaI CCWGG 3 cut(s) 47, 1601, 2190
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 8 cut(s) 194, 481, 502, 650, 954, 1541, 1789, 1890
NaeI GCCGGC 1 cut(s) 486
NciI CCSGG 3 cut(s) 56, 395, 1628
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 9 cut(s) 371, 636, 854, 991, 1262, 1279, 1891, 1920, 1976
NlaIV GGNNCC 4 cut(s) 44, 108, 172, 1885
NmeAIII GCCGAG 2 cut(s) 165, 261
NmuCI GTSAC 7 cut(s) 58, 77, 412, 1664, 1688, 1828, 1871
NsbI TGCGCA 1 cut(s) 1892
NsiI ATGCAT 1 cut(s) 1561
NspI RCATGY 2 cut(s) 854, 1262
NspV TTCGAA 2 cut(s) 115, 245
PaeI GCATGC 1 cut(s) 1262
PaeR7I CTCGAG 1 cut(s) 2221
PagI TCATGA 1 cut(s) 1275
PciI ACATGT 1 cut(s) 850
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 486
PdmI GAANNNNTTC 4 cut(s) 251, 1009, 1192, 1812
PfeI GAWTC 5 cut(s) 176, 242, 382, 1010, 1235
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 7 cut(s) 17, 631, 655, 819, 1537, 2109, 2343
Ple19I CGATCG 2 cut(s) 36, 40
PleI GAGTC 8 cut(s) 87, 425, 796, 946, 1140, 1671, 1718, 2213
PpsI GAGTC 8 cut(s) 87, 425, 796, 946, 1140, 1671, 1718, 2213
PscI ACATGT 1 cut(s) 850
PsiI TTATAA 1 cut(s) 2379
Psp6I CCWGG 3 cut(s) 45, 1599, 2188
PspGI CCWGG 3 cut(s) 45, 1599, 2188
PspN4I GGNNCC 4 cut(s) 44, 108, 172, 1885
PspPI GGNCC 3 cut(s) 43, 171, 371
PspXI VCTCGAGB 1 cut(s) 2221
PstI CTGCAG 1 cut(s) 950
PstNI CAGNNNCTG 1 cut(s) 2102
PsuI RGATCY 3 cut(s) 661, 1453, 2059
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 2 cut(s) 36, 40
RsaI GTAC 2 cut(s) 287, 2045
RsaNI GTAC 2 cut(s) 286, 2044
RseI CAYNNNNRTG 2 cut(s) 1489, 1816
SaqAI TTAA 9 cut(s) 740, 1112, 1148, 1184, 1284, 1416, 1734, 1785, 2183
SatI GCNGC 7 cut(s) 16, 630, 654, 818, 1536, 2108, 2342
Sau96I GGNCC 3 cut(s) 43, 171, 371
SchI GAGTC 8 cut(s) 87, 425, 797, 947, 1141, 1672, 1718, 2213
ScrFI CCNGG 6 cut(s) 47, 56, 395, 1601, 1628, 2190
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 8 cut(s) 1006, 1096, 1130, 1132, 1166, 1168, 1568, 1902
SfcI CTRYAG 3 cut(s) 909, 946, 2303
Sfr274I CTCGAG 1 cut(s) 2221
SfuI TTCGAA 2 cut(s) 115, 245
SinI GGWCC 3 cut(s) 43, 171, 371
SlaI CTCGAG 1 cut(s) 2221
SmiMI CAYNNNNRTG 2 cut(s) 1489, 1816
SmlI CTYRAG 2 cut(s) 2221, 2467
SmoI CTYRAG 2 cut(s) 2221, 2467
SphI GCATGC 1 cut(s) 1262
SsiI CCGC 6 cut(s) 8, 104, 150, 167, 316, 1721
SspI AATATT 1 cut(s) 1375
SspMI CTAG 4 cut(s) 615, 1856, 2054, 2406
StyD4I CCNGG 6 cut(s) 45, 54, 393, 1599, 1626, 2188
TaaI ACNGT 6 cut(s) 418, 913, 1282, 1694, 1871, 2372
TaiI ACGT 3 cut(s) 123, 1533, 2133
TaqII GACCGA 2 cut(s) 188, 1968
TatI WGTACW 2 cut(s) 285, 2043
TfiI GAWTC 5 cut(s) 176, 242, 382, 1010, 1235
Tru1I TTAA 9 cut(s) 740, 1112, 1148, 1184, 1284, 1416, 1734, 1785, 2183
Tru9I TTAA 9 cut(s) 740, 1112, 1148, 1184, 1284, 1416, 1734, 1785, 2183
TscAI CASTG 5 cut(s) 268, 1006, 1583, 1697, 1823
TseFI GTSAC 7 cut(s) 58, 77, 412, 1664, 1688, 1828, 1871
TseI GCWGC 7 cut(s) 15, 629, 653, 817, 1535, 2107, 2341
Tsp45I GTSAC 7 cut(s) 58, 77, 412, 1664, 1688, 1828, 1871
TspGWI ACGGA 2 cut(s) 318, 973
TspRI CASTG 5 cut(s) 268, 1006, 1583, 1697, 1823
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 3 cut(s) 43, 171, 371
XapI RAATTY 5 cut(s) 279, 1521, 1712, 1863, 2430
XbaI TCTAGA 1 cut(s) 614
XceI RCATGY 2 cut(s) 854, 1262
XhoI CTCGAG 1 cut(s) 2221
XmnI GAANNNNTTC 4 cut(s) 251, 1009, 1192, 1812
XspI CTAG 4 cut(s) 615, 1856, 2054, 2406
Zsp2I ATGCAT 1 cut(s) 1561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.