Rorug04G0258400

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011201
Physical Location & Seq
Forward (+)
43147252 .. 43148449
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0258400.1

Sequence Viewer

Length: 648 bp
ATGCACATTCATTTTGAACAATCCCCATCCTTTCTCCCCCGAGTTTTTTCTTTCATGGCTTCCAACACCCTCCAGCACCGAGTCACCAATGGCGACCAACCACCCTTGAACATTCCCCCCATTCCCACCAAACCAATAAGCACCACCATCACCAAACAAGCCAACAAGGCCAAGGCACATAGAGCCCTAAGGTCCCTAGCCATTGGCATTGCGGTCCCCTTCTTCTTGTCCGTGACCGTCATTCTCATATTTGGCTCGGGCATCAAGTACCGAGCCATGTCCAAACCGTTTTGGTTCCCACCGGTTTGGATCATACACATGTCGTCATTGGGTTCCTCCATCCTCATGGGACTCGCTGCCTGGCTTGTTTGGGCGGATGGTGGGTTTCATTCGCAATCCACTTCCAATTCGTTGTTCTTCTACATTGCTCAGATTTCGTTAAGCATCATTTGGGGTCCCATTGTTCTTGTGTTTGGGGCGGCTTGGATGGGATTGCTTCTTTGTTTGGTGCATTTCGGAACTCTAATCGCTTGTTATATGAGCTTTCGAGATGTGAATCCGTTTGCCAAAGATCTGGTAAAACCATGCTTGGCTTGGGCGGGATATCTCACCATTGTTAATAGTACGCTTGTATGTATTGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

215

Amino Acids

23.69

Weight (kDa)

9.78

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TspO_MBR PF03073 85 - 210 7.3e-26 TspO/MBR family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13170 AT1G13170
fragaria_vesca FvH4_4g25220 FvH4_4g25220
malus_domestica MD13G1105800.v1.1 MD16G1106000.v1.1
prunus_persica Prupe.1G240400_v2.0.a1
pyrus_communis pycom13g09180 pycom16g09010
rosa_chinensis RchiOBHm_Chr4g0432411
rosa_laevigata RLG00000003003 RLG00000006845
rosa_multiflora Rmu_sc0001084.1_g000022
rosa_roxburghii Rroxscaffold_5G00373880
rosa_rugosa Rorug04G0258300 Rorug04G0258400
rosa_samantha Rh4BG321800 Rh4DG317500
rosa_wichuraiana Rw4G027300 Rw7G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 212, 374, 479, 599
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 642
AfaI GTAC 2 cut(s) 269, 625
AflIII ACRYGT 1 cut(s) 318
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 17, 109
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 1 cut(s) 543
AluI AGCT 1 cut(s) 543
AlwI GGATC 1 cut(s) 317
Ama87I CYCGRG 2 cut(s) 39, 256
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 642
AsiGI ACCGGT 1 cut(s) 301
AspS9I GGNCC 3 cut(s) 192, 214, 455
AsuHPI GGTGA 3 cut(s) 76, 142, 601
AvaI CYCGRG 2 cut(s) 39, 256
AvaII GGWCC 3 cut(s) 192, 214, 455
AxyI CCTNAGG 1 cut(s) 188
BanII GRGCYC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 343
BccI CCATC 5 cut(s) 34, 155, 347, 371, 481
BciT130I CCWGG 1 cut(s) 361
BfaI CTAG 1 cut(s) 197
BglI GCCNNNNNGGC 1 cut(s) 167
BglII AGATCT 1 cut(s) 571
BisI GCNGC 2 cut(s) 357, 480
BlsI GCNGC 2 cut(s) 358, 481
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 3 cut(s) 192, 214, 455
BmeT110I CYCGRG 2 cut(s) 39, 256
BmgT120I GGNCC 3 cut(s) 192, 214, 455
BmiI GGNNCC 6 cut(s) 194, 216, 296, 334, 456, 457
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 270, 453
BpmI CTGGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 301
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 2 cut(s) 207, 423
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 4 cut(s) 26, 339, 382, 492
BseJI GATNNNNATC 1 cut(s) 555
BseMI GCAATG 2 cut(s) 207, 423
BseMII CTCAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 301
BsiHKCI CYCGRG 2 cut(s) 39, 256
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 4 cut(s) 178, 200, 363, 441
BsmFI GGGAC 4 cut(s) 178, 200, 363, 441
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 39, 256
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 309, 571
BspACI CCGC 4 cut(s) 212, 374, 479, 599
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 6 cut(s) 194, 216, 296, 334, 456, 457
BspPI GGATC 1 cut(s) 317
BsrDI GCAATG 2 cut(s) 207, 423
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 309, 571
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 238, 288
BstDEI CTNAG 2 cut(s) 188, 429
BstF5I GGATG 4 cut(s) 26, 339, 382, 492
BstKTI GATC 2 cut(s) 312, 574
BstMBI GATC 2 cut(s) 309, 571
BstMWI GCNNNNNNNGC 2 cut(s) 167, 182
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 3 cut(s) 306, 346, 574
BstYI RGATCY 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 4 cut(s) 26, 339, 382, 492
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 3 cut(s) 192, 214, 455
Csp6I GTAC 2 cut(s) 268, 624
CspAI ACCGGT 1 cut(s) 301
CviAII CATG 5 cut(s) 55, 277, 319, 346, 585
CviQI GTAC 2 cut(s) 268, 624
DdeI CTNAG 2 cut(s) 188, 429
DpnI GATC 2 cut(s) 311, 573
DpnII GATC 2 cut(s) 309, 571
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 187
Eco32I GATATC 1 cut(s) 605
Eco47I GGWCC 3 cut(s) 192, 214, 455
Eco81I CCTNAGG 1 cut(s) 188
Eco88I CYCGRG 2 cut(s) 39, 256
EcoO109I RGGNCCY 2 cut(s) 192, 455
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 58, 280, 322, 349, 588
FaqI GGGAC 4 cut(s) 178, 200, 363, 441
FatI CATG 5 cut(s) 54, 276, 318, 345, 584
FauI CCCGC 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 357, 480
FokI GGATG 4 cut(s) 13, 326, 389, 499
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 357, 480
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 357, 480
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 302
Hin1II CATG 5 cut(s) 58, 280, 322, 349, 588
HinfI GANTC 3 cut(s) 81, 351, 556
HpaII CCGG 1 cut(s) 302
HphI GGTGA 3 cut(s) 76, 142, 601
Hpy188I TCNGA 2 cut(s) 432, 518
Hpy188III TCNNGA 1 cut(s) 548
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 238, 288
HpyCH4V TGCA 2 cut(s) 4, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 182
HpyF3I CTNAG 2 cut(s) 188, 429
Hsp92II CATG 5 cut(s) 58, 280, 322, 349, 588
KflI GGGWCCC 1 cut(s) 455
Kzo9I GATC 2 cut(s) 309, 571
LpnPI CCDG 5 cut(s) 86, 315, 346, 373, 560
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 2 cut(s) 270, 453
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 82, 232
MalI GATC 2 cut(s) 311, 573
MboI GATC 2 cut(s) 309, 571
MboII GAAGA 2 cut(s) 214, 409
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 2 cut(s) 406, 642
MlyI GAGTC 2 cut(s) 90, 345
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 3 cut(s) 80, 346, 353
MseI TTAA 2 cut(s) 440, 618
MslI CAYNNNNRTG 2 cut(s) 317, 344
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 167, 182
NdeII GATC 2 cut(s) 309, 571
NlaIII CATG 5 cut(s) 58, 280, 322, 349, 588
NlaIV GGNNCC 6 cut(s) 194, 216, 296, 334, 456, 457
NmuCI GTSAC 2 cut(s) 82, 232
NspI RCATGY 1 cut(s) 322
PciI ACATGT 1 cut(s) 318
PfeI GAWTC 1 cut(s) 556
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 2 cut(s) 358, 481
PleI GAGTC 2 cut(s) 89, 345
PpsI GAGTC 2 cut(s) 89, 345
PpuMI RGGWCCY 2 cut(s) 192, 455
PscI ACATGT 1 cut(s) 318
Psp5II RGGWCCY 2 cut(s) 192, 455
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 6 cut(s) 194, 216, 296, 334, 456, 457
PspPI GGNCC 3 cut(s) 192, 214, 455
PspPPI RGGWCCY 2 cut(s) 192, 455
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 2 cut(s) 269, 625
RsaNI GTAC 2 cut(s) 268, 624
RseI CAYNNNNRTG 2 cut(s) 317, 344
SaqAI TTAA 2 cut(s) 440, 618
SatI GCNGC 2 cut(s) 357, 480
Sau3AI GATC 2 cut(s) 309, 571
Sau96I GGNCC 3 cut(s) 192, 214, 455
SchI GAGTC 2 cut(s) 90, 345
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 187
SetI ASST 2 cut(s) 194, 545
SfaNI GCATC 2 cut(s) 270, 453
SinI GGWCC 3 cut(s) 192, 214, 455
SmiMI CAYNNNNRTG 2 cut(s) 317, 344
Sse9I AATT 2 cut(s) 406, 642
SsiI CCGC 4 cut(s) 212, 374, 479, 599
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 238, 288
TaqI TCGA 1 cut(s) 547
TasI AATT 2 cut(s) 406, 642
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 2 cut(s) 440, 618
Tru9I TTAA 2 cut(s) 440, 618
TseFI GTSAC 2 cut(s) 82, 232
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 82, 232
TspDTI ATGAA 2 cut(s) 43, 377
TspGWI ACGGA 2 cut(s) 220, 549
VpaK11BI GGWCC 3 cut(s) 192, 214, 455
XapI RAATTY 1 cut(s) 642
XceI RCATGY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.