MD16G1106000.v1.1

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011201
Physical Location & Seq
Reverse (-)
7437211 .. 7441755
4545 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1106000.v1.1.491

Sequence Viewer

Length: 2463 bp
ATGAACCCGCTGTGCTGCATTGCGCCGGTTTCGGTCGATCGGGACCGGGGCACCCCGGTGGCGGCGAAGCAGTTGGGTGAGTGCCAGATAGGCCCGGAGGCTCCGATCCGGAACGTTAGCTACGGTTCGAGGCCGAGCTACTCGGCTCAGGTCTCGTCGGCCGGTACTGAAACGGACAGGGCTTCCGTCGCGGCGGGGCATGAGGTTGAAGATACGATCAGTGAAGCAAGGGATTCGAAGGTGTTTGGCGGAGGCGTGAGCGGAGGCGTGGCTGGGATTCTGTACAAATGGGTGAACTACGGGAAGGGGTGGCGGTCGCGGTGGTTTGTGCTCGAAGACGGCGTGCTTTCGTACTATAAGGTTCATGGACCGGACAAGATTTTGATGAGCCAGGTGAGAGAGAAGGGGTTGAGGGTGATCGGAGAGGACTCGCTGAGGTATATGAAGAAGGCGAATTGGGGAAGTAATCGGCTTGGCGGCGCGGCGGCGGCGGCGGCGAGGCCGTGGAAGCCTTTCGGAGAAGTGCATTTGAAGGTCTCTTCAATTCGTGCCAGCAAATCAGATGATAAACGGCTTTCCATATTCACAGGAACTAGAACTCTTCACTTGTGGTGTGTATCGAGAGAGGACCGAGCTACATGGGTTGAGGCACTGCTCGGTGCTAAAGATCTGTTTCCTCGAGTCTTTACAAGCAATGATTTAGTACTTTCGAGAGATATAGTTGTCTCGACAGAGAAACTAAGACTAAGATTAGCACAGGAGGGCATTAATGAGCCAGTGATCAAAGACTGCGAGTCAATAATGCTCTTAGAAGTGTCAGAACTTCAGAACCAGTTGAAGGCTCTTCGGAGTAAACACGTGATGCTGTTGGAGTCATTGAGACAATTGGAGAAGGAGAAAATAGAGCTGGAAACTACAGTAGTGGATGAAACAAAGGAGCGTGAGTCATATGGACAGGGGGATAGGAGATTTAGTGATTTCTATTCCGTCTTATCTGAGGGCAGTGCAAGTGATTCTGATGCAGATAATGAAAGCCAAATTGAAACAGATGAAGATGAGGGAACATATTTTGATACACATGACATTTTGTCTTCAGAAGCTCTAAGAAGTGCTTCCTATCGAAGTAGAGAAGTCTTGGGGAATGATACTCTAAGAAGTGCTTCCTACCGGAGCAAGGAAGGTTTGGGAAATGGTTCTATATTTGAAAGAGATTCTTTCTTTTCCGATCGATTGCATGGAGTTGAAGAGATCACGACAATTAAATATCCATATGTGAAAAGGAGGGATAATTTGCCAGAACCCAAGGAGAAAGAGAAGCCTATTAGCTTGTGGTCGATTATCAAGGATAATATTGGGAAGGACTTGTCTGGAGTTTGTCTTCCTGTTTATTTTAATGAACCACTCTCATCGTTGCAAAAGTGCTTTGAAGATCTGGAATATTCAAACTTGGTTGATCGAGCATCGGAATGGGGAAAGTGGGGAAATGATTTAATGAGAATTCTAAATGTTGCAGCATTTGCTGTATCTGGCTATGCATCAACAGAAGGTCGGCATTGCAAACCCTTTAATCCTCTCCTTGGGGAGACCTATGAGGCTGACTATCCAGATAAAGGACTTCGTTTTTTCTCTGAAAAGGTGAGTCACCACCCAATGGTTGTTGCTTGTCACTGTGAAGGAAGAGGTTGGAAATTCTGGGCGGACTCCAATCTCAAAGGCAAGTTTTGGGGGCGTTCTATTCAGCTTGATCCTGTGGGTACCCTTGCCTTGCAGTTTGAGGATGGGGAGACGTTTCAGTGGAGCAAGGTCACTACCTCTATATACAATATCATACTAGGAAAAATTTATTGCGACCACTATGGCACCATGCGCATCAGGGGCAGTGGCAATTATTCCTGCAAGCTAAAGTTCAAGGAGCAGTCTATTATAGATCGAAATCCACATCAGGTTCATGGATTTGTTCAAGACAATAGAACTGGAGAGAAAGTAGCAATGTTGGTGGGTAAGTGGGACGAGGCAATGTACTACGTGCTGGGAGATCCAACTACAAAACCAAAGGGTTATGATCCTATGACAGAAGCTGTGCTTCTCTGGGAAAGAGATGACTATGTTACCAAGACAAGATACAATCTCTCTCCTTTTGCAATATCCCTTAATGAACTGACACCTGGCCTATTGGAGAGGTTACCGCCTACAGACTCAAGGCTAAGGCCAGATCAAAGACATTTGGAGAATGGCGATTATGAATTGGCAAATGCAGAGAAACTAAGACTTGAACAGCTACAAAGACAGGCAAGGAAGTTGCAAGAGAGAGGGTGGCAGCCAAGATGGTTTCGGAAAGACGAGGATGGTTGTTATAGTTACGTGGGAGGGTATTGGGAAACTAGGGAGAAGAAGAATTGGGACGGAATTCCCGATATTTTTGGCCAGAGTAGTGATTTGCCTTCGTGTTCCGGTGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

821

Amino Acids

92.89

Weight (kDa)

5.85

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 92 - 219 3.5e-07 PH domain
PH_11 PF15413 93 - 219 2.3e-14 Pleckstrin homology domain
Oxysterol_BP PF01237 442 - 796 9.5e-126 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13170 AT1G13170
fragaria_vesca FvH4_4g25220 FvH4_4g25220
malus_domestica MD13G1105800.v1.1 MD16G1106000.v1.1
prunus_persica Prupe.1G240400_v2.0.a1
pyrus_communis pycom13g09180 pycom16g09010
rosa_chinensis RchiOBHm_Chr4g0432411
rosa_laevigata RLG00000003003 RLG00000006845
rosa_multiflora Rmu_sc0001084.1_g000022
rosa_roxburghii Rroxscaffold_5G00373880
rosa_rugosa Rorug04G0258300 Rorug04G0258400
rosa_samantha Rh4BG321800 Rh4DG317500
rosa_wichuraiana Rw4G027300 Rw7G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1868
Acc65I GGTACC 1 cut(s) 1754
AccB1I GGYRCC 3 cut(s) 50, 1754, 1859
AccB7I CCANNNNNTGG 1 cut(s) 1651
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 3 cut(s) 191, 319, 482
AccIII TCCGGA 1 cut(s) 108
AclI AACGTT 1 cut(s) 114
AclWI GGATC 4 cut(s) 100, 1739, 2030, 2057
AcoI YGGCCR 2 cut(s) 159, 2422
AcsI RAATTY 4 cut(s) 1497, 1688, 1839, 2406
AcuI CTGAAG 2 cut(s) 809, 1077
AcvI CACGTG 1 cut(s) 859
AfaI GTAC 6 cut(s) 166, 284, 353, 705, 1756, 2021
AfiI CCNNNNNNNGG 6 cut(s) 61, 838, 1174, 1577, 1610, 1651
AflIII ACRYGT 1 cut(s) 856
AhdI GACNNNNNGTC 2 cut(s) 793, 1087
AjnI CCWGG 2 cut(s) 390, 2164
AleI CACNNNNGTG 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 6 cut(s) 157, 541, 730, 874, 1577, 1778
AlwI GGATC 4 cut(s) 100, 1739, 2030, 2057
AlwNI CAGNNNCTG 1 cut(s) 2078
Ama87I CYCGRG 1 cut(s) 678
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 7 cut(s) 91, 131, 159, 500, 2167, 2207, 2422
ApeKI GCWGC 3 cut(s) 15, 1511, 2317
ApoI RAATTY 4 cut(s) 1497, 1688, 1839, 2406
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 4 cut(s) 512, 1111, 1159, 1192
Asp718I GGTACC 1 cut(s) 1754
AspLEI GCGC 3 cut(s) 25, 482, 1869
AspS9I GGNCC 4 cut(s) 43, 92, 368, 628
AsuC2I CCSGG 3 cut(s) 47, 56, 95
AsuHPI GGTGA 6 cut(s) 89, 304, 406, 427, 1634, 1648
AsuII TTCGAA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 678
AvaII GGWCC 3 cut(s) 43, 368, 628
BaeGI GKGCMC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 2424
BanI GGYRCC 3 cut(s) 50, 1754, 1859
BbrPI CACGTG 1 cut(s) 859
BbsI GAAGAC 3 cut(s) 342, 1083, 1370
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 2, 1523, 2329
BccI CCATC 3 cut(s) 1772, 2319, 2339
BceAI ACGGC 3 cut(s) 355, 487, 587
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 2 cut(s) 392, 2166
BclI TGATCA 1 cut(s) 780
BcnI CCSGG 3 cut(s) 47, 56, 95
BcoDI GTCTC 6 cut(s) 157, 541, 730, 874, 1577, 1778
BfaI CTAG 3 cut(s) 594, 1832, 2382
BfmI CTRYAG 2 cut(s) 915, 2190
BglI GCCNNNNNGGC 1 cut(s) 90
BglII AGATCT 2 cut(s) 667, 1429
BmcAI AGTACT 1 cut(s) 705
Bme1390I CCNGG 5 cut(s) 47, 56, 95, 392, 2166
Bme18I GGWCC 3 cut(s) 43, 368, 628
BmeRI GACNNNNNGTC 2 cut(s) 793, 1087
BmeT110I CYCGRG 1 cut(s) 678
BmgT120I GGNCC 4 cut(s) 43, 92, 368, 628
BmiI GGNNCC 5 cut(s) 44, 52, 102, 1756, 1861
BmrFI CCNGG 5 cut(s) 47, 56, 95, 392, 2166
BmsI GCATC 5 cut(s) 852, 1009, 1469, 1544, 1878
BpiI GAAGAC 3 cut(s) 342, 1083, 1370
BpmI CTGGAG 2 cut(s) 1389, 1995
Bpu10I CCTNAGC 3 cut(s) 147, 434, 2204
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 2182
BpuMI CCSGG 3 cut(s) 47, 56, 95
Bsa29I ATCGAT 1 cut(s) 1228
BsaAI YACGTR 3 cut(s) 859, 2026, 2362
BsaBI GATNNNNATC 1 cut(s) 1932
BsaI GGTCTC 3 cut(s) 157, 541, 1577
BsaJI CCNNGG 5 cut(s) 46, 54, 503, 1302, 1576
BsaWI WCCGGW 4 cut(s) 108, 370, 1167, 2450
BsaXI ACNNNNNCTCC 6 cut(s) 929, 958, 959, 988, 1968, 1998
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 838, 1174, 1577, 1610, 1651
Bse118I RCCGGY 2 cut(s) 25, 161
Bse1I ACTGG 3 cut(s) 776, 832, 1978
Bse3DI GCAATG 5 cut(s) 18, 700, 1552, 1995, 2022
Bse8I GATNNNNATC 1 cut(s) 1932
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 2 cut(s) 392, 2166
BseCI ATCGAT 1 cut(s) 1228
BseDI CCNNGG 5 cut(s) 46, 54, 503, 1302, 1576
BseGI GGATG 3 cut(s) 931, 1783, 2350
BseJI GATNNNNATC 1 cut(s) 1932
BseLI CCNNNNNNNGG 6 cut(s) 61, 838, 1174, 1577, 1610, 1651
BseMI GCAATG 5 cut(s) 18, 700, 1552, 1995, 2022
BseMII CTCAG 3 cut(s) 161, 425, 987
BseNI ACTGG 3 cut(s) 776, 832, 1978
BseSI GKGCMC 1 cut(s) 53
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 2, 1523, 2329
BseYI CCCAGC 2 cut(s) 272, 2029
Bsh1236I CGCG 3 cut(s) 191, 319, 482
Bsh1285I CGRYCG 5 cut(s) 36, 40, 162, 317, 1228
BshFI GGCC 7 cut(s) 93, 133, 161, 502, 2169, 2209, 2424
BshNI GGYRCC 3 cut(s) 50, 1754, 1859
BshVI ATCGAT 1 cut(s) 1228
BsiEI CGRYCG 5 cut(s) 36, 40, 162, 317, 1228
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 678
BsiSI CCGG 9 cut(s) 26, 46, 56, 95, 109, 162, 371, 1168, 2451
BslFI GGGAC 3 cut(s) 56, 2021, 2414
BslI CCNNNNNNNGG 6 cut(s) 61, 838, 1174, 1577, 1610, 1651
BsmAI GTCTC 6 cut(s) 157, 541, 730, 874, 1577, 1778
BsmBI CGTCTC 1 cut(s) 1778
BsmFI GGGAC 3 cut(s) 56, 2021, 2414
BsnI GGCC 7 cut(s) 93, 133, 161, 502, 2169, 2209, 2424
Bso31I GGTCTC 3 cut(s) 157, 541, 1577
BsoBI CYCGRG 1 cut(s) 678
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 53, 333
Bsp13I TCCGGA 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 282
BspANI GGCC 7 cut(s) 93, 133, 161, 502, 2169, 2209, 2424
BspCNI CTCAG 3 cut(s) 160, 426, 988
BspDI ATCGAT 1 cut(s) 1228
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 3 cut(s) 191, 319, 482
BspLI GGNNCC 5 cut(s) 44, 52, 102, 1756, 1861
BspPI GGATC 4 cut(s) 100, 1739, 2030, 2057
BspQI GCTCTTC 1 cut(s) 849
BspT104I TTCGAA 1 cut(s) 236
BspT107I GGYRCC 3 cut(s) 50, 1754, 1859
BspTNI GGTCTC 3 cut(s) 157, 541, 1577
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 5 cut(s) 18, 700, 1552, 1995, 2022
BsrFI RCCGGY 2 cut(s) 25, 161
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 776, 832, 1978
BssAI RCCGGY 2 cut(s) 25, 161
BssECI CCNNGG 5 cut(s) 46, 54, 503, 1302, 1576
BssT1I CCWWGG 2 cut(s) 1302, 1576
Bst2UI CCWGG 2 cut(s) 392, 2166
Bst4CI ACNGT 3 cut(s) 125, 919, 1670
Bst6I CTCTTC 6 cut(s) 544, 606, 849, 1239, 1672, 2451
BstAPI GCANNNNNTGC 1 cut(s) 1517
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 3 cut(s) 859, 2026, 2362
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 344, 553, 1898
BstDSI CCRYGG 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 2181
BstF5I GGATG 3 cut(s) 931, 1783, 2350
BstFNI CGCG 3 cut(s) 191, 319, 482
BstHHI GCGC 3 cut(s) 25, 482, 1869
BstMAI GTCTC 6 cut(s) 157, 541, 730, 874, 1577, 1778
BstMCI CGRYCG 5 cut(s) 36, 40, 162, 317, 1228
BstMWI GCNNNNNNNGC 9 cut(s) 90, 188, 488, 491, 494, 508, 1517, 1866, 1875
BstNI CCWGG 2 cut(s) 392, 2166
BstPI GGTNACC 1 cut(s) 2181
BstSCI CCNGG 5 cut(s) 45, 54, 93, 390, 2164
BstSFI CTRYAG 2 cut(s) 915, 2190
BstSLI GKGCMC 1 cut(s) 53
BstUI CGCG 3 cut(s) 191, 319, 482
BstV1I GCAGC 3 cut(s) 2, 1523, 2329
BstV2I GAAGAC 3 cut(s) 342, 1083, 1370
BstX2I RGATCY 3 cut(s) 667, 1429, 2035
BstYI RGATCY 3 cut(s) 667, 1429, 2035
BstZI CGGCCG 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 1228
BsuRI GGCC 7 cut(s) 93, 133, 161, 502, 2169, 2209, 2424
BsuTUI ATCGAT 1 cut(s) 1228
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 3 cut(s) 931, 1783, 2350
BtsI GCAGTG 3 cut(s) 650, 1009, 1885
BtsIMutI CAGTG 7 cut(s) 226, 650, 783, 1009, 1666, 1799, 1885
Cac8I GCNNGC 3 cut(s) 344, 553, 1898
CaiI CAGNNNCTG 1 cut(s) 2078
CfoI GCGC 3 cut(s) 25, 482, 1869
Cfr10I RCCGGY 2 cut(s) 25, 161
Cfr13I GGNCC 4 cut(s) 43, 92, 368, 628
ClaI ATCGAT 1 cut(s) 1228
Csp6I GTAC 6 cut(s) 165, 283, 352, 704, 1755, 2020
CspCI CAANNNNNGTGG 2 cut(s) 1977, 2012
CviAII CATG 7 cut(s) 200, 365, 639, 1079, 1235, 1864, 1949
CviQI GTAC 6 cut(s) 165, 283, 352, 704, 1755, 2020
DriI GACNNNNNGTC 2 cut(s) 793, 1087
EaeI YGGCCR 2 cut(s) 159, 2422
EagI CGGCCG 1 cut(s) 159
Eam1104I CTCTTC 6 cut(s) 544, 606, 849, 1239, 1672, 2451
Eam1105I GACNNNNNGTC 2 cut(s) 793, 1087
EarI CTCTTC 6 cut(s) 544, 606, 849, 1239, 1672, 2451
EciI GGCGGA 2 cut(s) 264, 1712
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 1302, 1576
Eco31I GGTCTC 3 cut(s) 157, 541, 1577
Eco47I GGWCC 3 cut(s) 43, 368, 628
Eco52I CGGCCG 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 809, 1077
Eco72I CACGTG 1 cut(s) 859
Eco88I CYCGRG 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 2181
EcoO65I GGTNACC 1 cut(s) 2181
EcoRI GAATTC 2 cut(s) 1497, 2406
EcoRII CCWGG 2 cut(s) 390, 2164
EcoT14I CCWWGG 2 cut(s) 1302, 1576
EcoT22I ATGCAT 1 cut(s) 1537
ErhI CCWWGG 2 cut(s) 1302, 1576
Esp3I CGTCTC 1 cut(s) 1778
FaeI CATG 7 cut(s) 203, 368, 642, 1082, 1238, 1867, 1952
FalI AAGNNNNNCTT 8 cut(s) 1096, 1128, 1144, 1176, 1198, 1230, 2067, 2099
FaqI GGGAC 3 cut(s) 56, 2021, 2414
FatI CATG 7 cut(s) 199, 364, 638, 1078, 1234, 1863, 1948
FauI CCCGC 2 cut(s) 15, 187
FauNDI CATATG 2 cut(s) 949, 1270
FbaI TGATCA 1 cut(s) 780
FokI GGATG 3 cut(s) 938, 1790, 2357
FspAI RTGCGCAY 1 cut(s) 1868
FspBI CTAG 3 cut(s) 594, 1832, 2382
FspI TGCGCA 1 cut(s) 1868
GlaI GCGC 3 cut(s) 24, 481, 1868
GsaI CCCAGC 2 cut(s) 276, 2033
GsuI CTGGAG 2 cut(s) 1389, 1995
HaeIII GGCC 7 cut(s) 93, 133, 161, 502, 2169, 2209, 2424
HapII CCGG 9 cut(s) 26, 46, 56, 95, 109, 162, 371, 1168, 2451
HhaI GCGC 3 cut(s) 25, 482, 1869
Hin1II CATG 7 cut(s) 203, 368, 642, 1082, 1238, 1867, 1952
Hin6I GCGC 3 cut(s) 23, 480, 1867
HinP1I GCGC 3 cut(s) 23, 480, 1867
HpaII CCGG 9 cut(s) 26, 46, 56, 95, 109, 162, 371, 1168, 2451
HphI GGTGA 6 cut(s) 89, 304, 406, 427, 1634, 1648
Hpy166II GTNNAC 2 cut(s) 295, 854
Hpy8I GTNNAC 2 cut(s) 295, 854
Hpy99I CGWCG 2 cut(s) 160, 191
HpyCH4III ACNGT 3 cut(s) 125, 919, 1670
HpyCH4IV ACGT 5 cut(s) 114, 858, 1787, 2025, 2361
HpyF10VI GCNNNNNNNGC 9 cut(s) 90, 188, 488, 491, 494, 508, 1517, 1866, 1875
HpySE526I ACGT 5 cut(s) 114, 858, 1787, 2025, 2361
Hsp92II CATG 7 cut(s) 203, 368, 642, 1082, 1238, 1867, 1952
HspAI GCGC 3 cut(s) 23, 480, 1867
Kpn2I TCCGGA 1 cut(s) 108
KpnI GGTACC 1 cut(s) 1758
Ksp22I TGATCA 1 cut(s) 780
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 5 cut(s) 106, 937, 1170, 1797, 1912
Lsp1109I GCAGC 3 cut(s) 2, 1523, 2329
LweI GCATC 5 cut(s) 852, 1009, 1469, 1544, 1878
MaeI CTAG 3 cut(s) 594, 1832, 2382
MaeII ACGT 5 cut(s) 114, 858, 1787, 2025, 2361
MaeIII GTNAC 6 cut(s) 1640, 1664, 1804, 2107, 2181, 2357
MbiI CCGCTC 1 cut(s) 261
MfeI CAATTG 1 cut(s) 884
MflI RGATCY 3 cut(s) 667, 1429, 2035
MhlI GDGCHC 2 cut(s) 53, 333
MlsI TGGCCA 1 cut(s) 2424
MluNI TGGCCA 1 cut(s) 2424
MlyI GAGTC 8 cut(s) 422, 690, 803, 881, 953, 1648, 1694, 2189
MmeI TCCRAC 3 cut(s) 849, 1664, 2063
Mox20I TGGCCA 1 cut(s) 2424
Mph1103I ATGCAT 1 cut(s) 1537
MroI TCCGGA 1 cut(s) 108
MroXI GAANNNNTTC 4 cut(s) 512, 1111, 1159, 1192
MscI TGGCCA 1 cut(s) 2424
MseI TTAA 6 cut(s) 768, 1260, 1392, 1490, 1566, 2151
MslI CAYNNNNRTG 2 cut(s) 56, 1465
Msp20I TGGCCA 1 cut(s) 2424
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 9 cut(s) 26, 46, 56, 95, 109, 162, 371, 1168, 2451
MspR9I CCNGG 5 cut(s) 47, 56, 95, 392, 2166
MunI CAATTG 1 cut(s) 884
MvaI CCWGG 2 cut(s) 392, 2166
MvnI CGCG 3 cut(s) 191, 319, 482
MwoI GCNNNNNNNGC 9 cut(s) 90, 188, 488, 491, 494, 508, 1517, 1866, 1875
NciI CCSGG 3 cut(s) 47, 56, 95
NdeI CATATG 2 cut(s) 949, 1270
NlaIII CATG 7 cut(s) 203, 368, 642, 1082, 1238, 1867, 1952
NlaIV GGNNCC 5 cut(s) 44, 52, 102, 1756, 1861
NmeAIII GCCGAG 2 cut(s) 122, 159
NmuCI GTSAC 3 cut(s) 1640, 1664, 1804
NsbI TGCGCA 1 cut(s) 1868
NsiI ATGCAT 1 cut(s) 1537
NspV TTCGAA 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 2409
PdmI GAANNNNTTC 4 cut(s) 512, 1111, 1159, 1192
PfeI GAWTC 4 cut(s) 233, 277, 1013, 1211
PflMI CCANNNNNTGG 1 cut(s) 1651
Ple19I CGATCG 2 cut(s) 40, 1228
PleI GAGTC 8 cut(s) 422, 689, 802, 880, 952, 1647, 1694, 2189
PmaCI CACGTG 1 cut(s) 859
PmlI CACGTG 1 cut(s) 859
PpsI GAGTC 8 cut(s) 422, 689, 802, 880, 952, 1647, 1694, 2189
Ppu21I YACGTR 3 cut(s) 859, 2026, 2362
PshBI ATTAAT 1 cut(s) 768
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 390, 2164
PspCI CACGTG 1 cut(s) 859
PspEI GGTNACC 1 cut(s) 2181
PspFI CCCAGC 2 cut(s) 272, 2029
PspGI CCWGG 2 cut(s) 390, 2164
PspN4I GGNNCC 5 cut(s) 44, 52, 102, 1756, 1861
PspPI GGNCC 4 cut(s) 43, 92, 368, 628
PspXI VCTCGAGB 1 cut(s) 678
PsrI GAACNNNNNNTAC 2 cut(s) 104, 136
PstNI CAGNNNCTG 1 cut(s) 2078
PsuI RGATCY 3 cut(s) 667, 1429, 2035
PvuI CGATCG 2 cut(s) 40, 1228
RsaI GTAC 6 cut(s) 166, 284, 353, 705, 1756, 2021
RsaNI GTAC 6 cut(s) 165, 283, 352, 704, 1755, 2020
RseI CAYNNNNRTG 2 cut(s) 56, 1465
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 6 cut(s) 768, 1260, 1392, 1490, 1566, 2151
Sau96I GGNCC 4 cut(s) 43, 92, 368, 628
ScaI AGTACT 1 cut(s) 705
SchI GAGTC 8 cut(s) 422, 690, 803, 881, 953, 1648, 1694, 2189
ScrFI CCNGG 5 cut(s) 47, 56, 95, 392, 2166
SduI GDGCHC 2 cut(s) 53, 333
SfaNI GCATC 5 cut(s) 852, 1009, 1469, 1544, 1878
SfcI CTRYAG 2 cut(s) 915, 2190
Sfr274I CTCGAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 236
SinI GGWCC 3 cut(s) 43, 368, 628
SlaI CTCGAG 1 cut(s) 678
SmiMI CAYNNNNRTG 2 cut(s) 56, 1465
SmlI CTYRAG 2 cut(s) 678, 2197
SmoI CTYRAG 2 cut(s) 678, 2197
SspI AATATT 2 cut(s) 1351, 1439
SspMI CTAG 3 cut(s) 594, 1832, 2382
StyD4I CCNGG 5 cut(s) 45, 54, 93, 390, 2164
StyI CCWWGG 2 cut(s) 1302, 1576
TaaI ACNGT 3 cut(s) 125, 919, 1670
TaiI ACGT 5 cut(s) 117, 861, 1790, 2028, 2364
TaqII GACCGA 2 cut(s) 22, 645
TatI WGTACW 3 cut(s) 282, 703, 2019
TauI GCSGC 8 cut(s) 65, 194, 480, 485, 488, 491, 494, 497
TfiI GAWTC 4 cut(s) 233, 277, 1013, 1211
Tru1I TTAA 6 cut(s) 768, 1260, 1392, 1490, 1566, 2151
Tru9I TTAA 6 cut(s) 768, 1260, 1392, 1490, 1566, 2151
TscAI CASTG 7 cut(s) 226, 657, 783, 1009, 1673, 1799, 1885
TseFI GTSAC 3 cut(s) 1640, 1664, 1804
TseI GCWGC 3 cut(s) 15, 1511, 2317
Tsp45I GTSAC 3 cut(s) 1640, 1664, 1804
TspGWI ACGGA 4 cut(s) 175, 188, 976, 2418
TspRI CASTG 7 cut(s) 226, 657, 783, 1009, 1673, 1799, 1885
Van91I CCANNNNNTGG 1 cut(s) 1651
VpaK11BI GGWCC 3 cut(s) 43, 368, 628
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 4 cut(s) 1497, 1688, 1839, 2406
XhoI CTCGAG 1 cut(s) 678
XmnI GAANNNNTTC 4 cut(s) 512, 1111, 1159, 1192
XspI CTAG 3 cut(s) 594, 1832, 2382
ZrmI AGTACT 1 cut(s) 705
Zsp2I ATGCAT 1 cut(s) 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.