Rorug04G0258300

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011201
Physical Location & Seq
Reverse (-)
43143008 .. 43146122
3115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0258300.1

Sequence Viewer

Length: 600 bp
ATGGCCAAACCACAGGGGCTATGTATGAAATTTCTTTCGAGGAGAGGACCATCTATGCAATTTGGCAAGAAAGGAAAAGTAAGGCGCGCCAATAAGCAATTAGGGCCAGAATGGTCATTTTGTTGCTTCACTATTCCCCTCTCCGCTTCCAAATTTACTAAACCACCACACATTTCTCCACCTCTCCGCACTCAACAGCCGCGAGCCTCCAAAACCTTGGCAACGCAGAGCCTTCGATCATGGGTTTATTTCGAGTTTTCTAGTCAAGTTAAGCATTTCGAATCGATGTCTAAGTGCAAAAACATGTGGAAGCTTTGGCATGATGGACATGATACAGATGACCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTCCAGCAGATGCAAACCAGGTTCCAGACAATCTTAAGTTTGCTTTGTATCCTTGACCATGATGCACTTGATGAGATGGGCAACAGGATCGAGGAGTTAGAGCAGAGCATCAATGATCTCAGAGCTGAAATGGGAGTGGAAGGCACGCCATCCCCTTCAGCCCCTTCAAAGCCCAAGGTAGATACCAAGTCAGCTGATGATTCAGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

9.24

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 121 - 172 2.2e-12 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13170 AT1G13170
fragaria_vesca FvH4_4g25220 FvH4_4g25220
malus_domestica MD13G1105800.v1.1 MD16G1106000.v1.1
prunus_persica Prupe.1G240400_v2.0.a1
pyrus_communis pycom13g09180 pycom16g09010
rosa_chinensis RchiOBHm_Chr4g0432411
rosa_laevigata RLG00000003003 RLG00000006845
rosa_multiflora Rmu_sc0001084.1_g000022
rosa_roxburghii Rroxscaffold_5G00373880
rosa_rugosa Rorug04G0258300 Rorug04G0258400
rosa_samantha Rh4BG321800 Rh4DG317500
rosa_wichuraiana Rw4G027300 Rw7G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 87, 202
AciI CCGC 3 cut(s) 144, 187, 200
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 29, 152
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 1 cut(s) 378
AflII CTTAAG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 555
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 4 cut(s) 313, 371, 512, 581
AluI AGCT 4 cut(s) 313, 371, 512, 581
AlwI GGATC 1 cut(s) 482
AoxI GGCC 2 cut(s) 3, 104
ApoI RAATTY 2 cut(s) 29, 152
AscI GGCGCGCC 1 cut(s) 85
AspLEI GCGC 2 cut(s) 87, 89
AspS9I GGNCC 2 cut(s) 47, 104
AsuII TTCGAA 1 cut(s) 279
AvaII GGWCC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BccI CCATC 4 cut(s) 58, 317, 457, 544
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 457, 491
BciT130I CCWGG 1 cut(s) 406
BciVI GTATCC 1 cut(s) 446
BfaI CTAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 421
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 47, 104
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 3 cut(s) 387, 439, 504
BpmI CTGGAG 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 216, 561
BseBI CCWGG 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 216, 561
BseGI GGATG 1 cut(s) 536
BseMII CTCAG 1 cut(s) 520
BsePI GCGCGC 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 55, 494
Bsh1236I CGCG 2 cut(s) 87, 202
BshFI GGCC 2 cut(s) 5, 106
BshVI ATCGAT 1 cut(s) 284
BsnI GGCC 2 cut(s) 5, 106
Bsp119I TTCGAA 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 3 cut(s) 236, 474, 502
BspACI CCGC 3 cut(s) 144, 187, 200
BspANI GGCC 2 cut(s) 5, 106
BspCNI CTCAG 1 cut(s) 519
BspDI ATCGAT 1 cut(s) 284
BspFNI CGCG 2 cut(s) 87, 202
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 216, 561
BssHII GCGCGC 1 cut(s) 85
BssMI GATC 3 cut(s) 236, 474, 502
BssT1I CCWWGG 2 cut(s) 216, 561
Bst2UI CCWGG 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 421
BstAUI TGTACA 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 87, 204, 533
BstDEI CTNAG 2 cut(s) 291, 506
BstF5I GGATG 1 cut(s) 536
BstFNI CGCG 2 cut(s) 87, 202
BstHHI GCGC 2 cut(s) 87, 89
BstKTI GATC 3 cut(s) 239, 477, 505
BstMBI GATC 3 cut(s) 236, 474, 502
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 404
BstUI CGCG 2 cut(s) 87, 202
BstXI CCANNNNNNTGG 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 284
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 2 cut(s) 5, 106
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 1 cut(s) 536
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 3 cut(s) 87, 204, 533
CfoI GCGC 2 cut(s) 87, 89
Cfr13I GGNCC 2 cut(s) 47, 104
ClaI ATCGAT 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 404
Csp6I GTAC 1 cut(s) 377
CviAII CATG 5 cut(s) 240, 304, 320, 329, 446
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 291, 506
DpnI GATC 3 cut(s) 238, 476, 504
DpnII GATC 3 cut(s) 236, 474, 502
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 216, 561
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 2 cut(s) 216, 561
ErhI CCWWGG 2 cut(s) 216, 561
FaeI CATG 5 cut(s) 243, 307, 323, 332, 449
FaiI YATR 9 cut(s) 22, 26, 56, 241, 305, 321, 330, 365, 447
FatI CATG 5 cut(s) 239, 303, 319, 328, 445
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 261
GlaI GCGC 2 cut(s) 86, 88
GluI GCNGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 5, 106
HhaI GCGC 2 cut(s) 87, 89
Hin1II CATG 5 cut(s) 243, 307, 323, 332, 449
Hin6I GCGC 2 cut(s) 85, 87
HinP1I GCGC 2 cut(s) 85, 87
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 2 cut(s) 281, 587
Hpy188I TCNGA 1 cut(s) 509
Hpy188III TCNNGA 1 cut(s) 412
HpyAV CCTTC 4 cut(s) 242, 521, 552, 561
HpyCH4V TGCA 4 cut(s) 58, 297, 400, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 291, 506
Hsp92II CATG 5 cut(s) 243, 307, 323, 332, 449
HspAI GCGC 2 cut(s) 85, 87
Kzo9I GATC 3 cut(s) 236, 474, 502
LpnPI CCDG 6 cut(s) 120, 391, 404, 418, 425, 457
LweI GCATC 3 cut(s) 387, 439, 504
MabI ACCWGGT 1 cut(s) 404
MaeI CTAG 1 cut(s) 261
MalI GATC 3 cut(s) 238, 476, 504
MboI GATC 3 cut(s) 236, 474, 502
MboII GAAGA 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 29, 59, 98, 152
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 33, 38, 149, 192, 217, 472
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 270, 422
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 581
MspCI CTTAAG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 406
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 2 cut(s) 87, 202
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 3 cut(s) 236, 474, 502
NlaIII CATG 5 cut(s) 243, 307, 323, 332, 449
NlaIV GGNNCC 1 cut(s) 410
NspI RCATGY 1 cut(s) 307
NspV TTCGAA 1 cut(s) 279
PalAI GGCGCGCC 1 cut(s) 85
PauI GCGCGC 1 cut(s) 85
PciI ACATGT 1 cut(s) 303
PfeI GAWTC 2 cut(s) 281, 587
PkrI GCNGC 1 cut(s) 201
PscI ACATGT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 410
PspPI GGNCC 2 cut(s) 47, 104
PteI GCGCGC 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 270, 422
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 236, 474, 502
Sau96I GGNCC 2 cut(s) 47, 104
ScrFI CCNGG 1 cut(s) 406
SetI ASST 8 cut(s) 184, 218, 315, 373, 410, 514, 567, 583
SexAI ACCWGGT 1 cut(s) 404
SfaNI GCATC 3 cut(s) 387, 439, 504
SfuI TTCGAA 1 cut(s) 279
SgsI GGCGCGCC 1 cut(s) 85
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 4 cut(s) 29, 59, 98, 152
SsiI CCGC 3 cut(s) 144, 187, 200
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 2 cut(s) 216, 561
TaqI TCGA 6 cut(s) 38, 235, 252, 279, 284, 477
TasI AATT 4 cut(s) 29, 59, 98, 152
TatI WGTACW 1 cut(s) 376
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 281, 587
Tru1I TTAA 2 cut(s) 270, 422
Tru9I TTAA 2 cut(s) 270, 422
TscAI CASTG 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 2 cut(s) 29, 152
XceI RCATGY 1 cut(s) 307
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.