Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003374

Physical Location & Seq

Genomic Coordinates Forward (+)

11704338 .. 11707873

Gene Structure 3536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1148800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGCTCGGAAGGGTAATCAACAGAAGAATGCTGTAGATCGGCAGACATCAAAGCACAGAAAGAAGGGTTCAGATTCAGGGTGTACACTGGGAGAAACGAAAGGGAATGGGAAGGCAAGTGAAGTGAAAGTTTTTCCTGGAGAAGAACTGCCAAATGGTGACCAGCCAAGCAGTCCTCTTTCAGCCAGTGCAAGTAAAACCAATCATCCTGAAGATGAGAATAAAAACAGACAAAAGTCTGGAAAGTCTTTGAGGAAAGAGAAGCAAGGTATGGATGCAGGGCAGGGTCCAGAGGAGTCAAGTTCTTTAGGGAGTGATTTAGGAGATCACAATGGGAATAATGAAGCTCCAAGCAGGAGAGAAGAAAACGGGACATTACCTCCGAGCCACTTACGCCGAAAACACACAAAAAGAAAATCTGGTTCCTCCCTGAATAGATGGCATATGAGAACTTTGATGGCTCGATTAGAGTTTTCAGATACCCTATTGTTTAGAAACTTGAAGGCATCAGCATTGCCGCTTTTGAAGATGGCTAGTGAATGGCTACAGAGGCACGAGCCATTCTTTCTTACCATAAAAAGTAAGGCACTGTATGCCCGTGATTATGTCAAAACAAAGTTTGAGCAGGCATATCCATTCGTTTTGAAGTGGCTTATGCAGTTTGGGAGTATATTGTTTCTTTTATCAATGGCCTGGTTGGATTGCACCTTAAGGGGCTTTGATAGCTTAGTTCGGATGGGGACAACTTCCTTCTTTTCAGTTATATGGTGCAGTATTCTCTCAGTAGTTGCTATGGCCGGGATGTTCAAGTTTCTGATTGTGTTGGTCTTTGCTGCTTTGATTGGACTTTTCATTGGGTTCATGCTCTCGATTTTGGTGGTTTCTTTTTGTGGTGCTCTTTTCTTGTGGTTCTATGGAAGCTTTTGGACAACAGGATTTATAATCTTCTTAGGAGGTTTGGCATTCACACTGAGCCATGAGCGTATTGCCCTGTCAATTGCCACTTTGTATTCCATTTATTGTGCTTGGACATCTGTTGGATGGCTGGGTTTGCTTTTGGGGCTGAATTTATCTTTTATCTCAAGTGATTATCTGATATATTTCCTAAAGAACAATGTAAGTCAGCAGAGAAGACCCAACGGATCATCTGAGCAAACATCAGGAATGCCAGGTCAACCAGACTTCTTTAACAGTGAGCAGGCGCATGCTTCATCCTCCGGAAATGGCCCATGGTTTTCTGCTGATCGTAGCCCTGGAGTACCTTCAACCAGTGGCACTGATTCTGAGATAACCTCTGAAGATGAAGTAGTCCGGCTGTTAAACTGTACAGATCACTATTCTGCGTTGGGATTTTCTCGGTACGAGAATGTAGATGTTTCTTTACTGAAGCGGGAGTACAAGAAAAAGGTAAGTGCCATTATTTGTTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Jiv90

Protein Analysis

478

Amino Acids

53.06

Weight (kDa)

9.33

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49580 AT5G49580 AT5G49580
fragaria_vesca	FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670
malus_domestica	MD13G1148800.v1.1 MD13G1148900.v1.1 MD16G1149100.v1.1
prunus_persica	Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1
pyrus_communis	pycom13g12810 pycom16g12740 pycom16g12770
rosa_chinensis	RchiOBHm_Chr4g0426071
rosa_laevigata	RLG00000007319
rosa_multiflora	Rmu_co8183128.1_g000001 Rmu_ssc0000281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368080
rosa_rugosa	Rorug04G0208800 Rorug04G0208900
rosa_samantha	Rh4AG265400 Rh4BG271500 Rh4CG284400 Rh4DG267700
rosa_wichuraiana	Rw4G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
AccIII	TCCGGA	1 cut(s)	1217
AciI	CCGC	2 cut(s)	518, 1390
AclWI	GGATC	1 cut(s)	1150
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	3 cut(s)	231, 1317, 1406
AfaI	GTAC	5 cut(s)	85, 1260, 1327, 1361, 1397
AflII	CTTAAG	1 cut(s)	709
AgsI	TTSAA	5 cut(s)	502, 526, 646, 808, 1266
AjnI	CCWGG	4 cut(s)	136, 692, 1168, 1252
AluBI	AGCT	3 cut(s)	347, 726, 921
AluI	AGCT	3 cut(s)	347, 726, 921
Alw21I	GWGCWC	1 cut(s)	898
AlwI	GGATC	1 cut(s)	1150
Aor13HI	TCCGGA	1 cut(s)	1217
AoxI	GGCC	3 cut(s)	690, 795, 1225
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	1 cut(s)	1066
AspLEI	GCGC	1 cut(s)	1204
AspS9I	GGNCC	2 cut(s)	287, 1226
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	1379, 1411
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	1138
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	5 cut(s)	432, 451, 523, 730, 1035
BciT130I	CCWGG	4 cut(s)	138, 694, 1170, 1254
BcnI	CCSGG	1 cut(s)	799
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	2 cut(s)	33, 545
BfrI	CTTAAG	1 cut(s)	709
BisI	GCNGC	2 cut(s)	518, 834
BlsI	GCNGC	2 cut(s)	519, 835
Bme1390I	CCNGG	5 cut(s)	138, 694, 799, 1170, 1254
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 1226
BmiI	GGNNCC	2 cut(s)	288, 424
BmrFI	CCNGG	5 cut(s)	138, 694, 799, 1170, 1254
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	265, 515
BmuI	ACTGGG	1 cut(s)	98
BoxI	GACNNNNGTC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	1138
BplI	GAGNNNNNCTC	2 cut(s)	1277, 1309
BpmI	CTGGAG	2 cut(s)	159, 1275
BpuEI	CTTGAG	1 cut(s)	1066
BpuMI	CCSGG	1 cut(s)	799
BsaJI	CCNNGG	2 cut(s)	1229, 1252
BsaWI	WCCGGW	1 cut(s)	1217
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse1I	ACTGG	3 cut(s)	93, 186, 1269
Bse3DI	GCAATG	1 cut(s)	512
BseAI	TCCGGA	1 cut(s)	1217
BseBI	CCWGG	4 cut(s)	138, 694, 1170, 1254
BseDI	CCNNGG	2 cut(s)	1229, 1252
BseGI	GGATG	6 cut(s)	205, 280, 741, 807, 1046, 1211
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	4 cut(s)	795, 962, 1140, 1275
BseNI	ACTGG	3 cut(s)	93, 186, 1269
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	820
BseYI	CCCAGC	1 cut(s)	1045
BsgI	GTGCAG	1 cut(s)	790
BshFI	GGCC	3 cut(s)	692, 797, 1227
BsiHKAI	GWGCWC	1 cut(s)	898
BsiSI	CCGG	3 cut(s)	798, 1218, 1312
BslFI	GGGAC	2 cut(s)	385, 754
BsmFI	GGGAC	2 cut(s)	385, 754
BsmI	GAATGC	3 cut(s)	34, 962, 1170
BsnI	GGCC	3 cut(s)	692, 797, 1227
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp13I	TCCGGA	1 cut(s)	1217
Bsp1407I	TGTACA	2 cut(s)	83, 1325
Bsp143I	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
Bsp19I	CCATGG	1 cut(s)	1229
BspACI	CCGC	2 cut(s)	518, 1390
BspANI	GGCC	3 cut(s)	692, 797, 1227
BspCNI	CTCAG	4 cut(s)	794, 963, 1141, 1276
BspEI	TCCGGA	1 cut(s)	1217
BspLI	GGNNCC	2 cut(s)	288, 424
BspPI	GGATC	1 cut(s)	1150
BspTI	CTTAAG	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	2 cut(s)	83, 1325
BsrI	ACTGG	3 cut(s)	93, 186, 1269
BssECI	CCNNGG	2 cut(s)	1229, 1252
BssMI	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
BssSI	CACGAG	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	1229
Bst2BI	CACGAG	1 cut(s)	554
Bst2UI	CCWGG	4 cut(s)	138, 694, 1170, 1254
Bst4CI	ACNGT	3 cut(s)	591, 1193, 1325
BstAFI	CTTAAG	1 cut(s)	709
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	2 cut(s)	83, 1325
BstC8I	GCNNGC	3 cut(s)	627, 1200, 1206
BstDEI	CTNAG	6 cut(s)	727, 781, 949, 971, 1149, 1284
BstDSI	CCRYGG	1 cut(s)	1229
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	6 cut(s)	205, 280, 741, 807, 1046, 1211
BstHHI	GCGC	1 cut(s)	1204
BstKTI	GATC	5 cut(s)	40, 328, 1145, 1246, 1333
BstMBI	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
BstMWI	GCNNNNNNNGC	6 cut(s)	393, 550, 593, 723, 1051, 1060
BstNI	CCWGG	4 cut(s)	138, 694, 1170, 1254
BstNSI	RCATGY	1 cut(s)	1208
BstPAI	GACNNNNGTC	1 cut(s)	235
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	5 cut(s)	136, 692, 797, 1168, 1252
BstSFI	CTRYAG	2 cut(s)	33, 545
BstV1I	GCAGC	1 cut(s)	820
BstV2I	GAAGAC	1 cut(s)	1138
BsuRI	GGCC	3 cut(s)	692, 797, 1227
BtgI	CCRYGG	1 cut(s)	1229
BtsCI	GGATG	6 cut(s)	205, 280, 741, 807, 1046, 1211
BtsIMutI	CAGTG	7 cut(s)	86, 193, 587, 968, 1198, 1275, 1276
Cac8I	GCNNGC	3 cut(s)	627, 1200, 1206
CfoI	GCGC	1 cut(s)	1204
Cfr13I	GGNCC	2 cut(s)	287, 1226
Csp6I	GTAC	5 cut(s)	84, 1259, 1326, 1360, 1396
CviAII	CATG	4 cut(s)	862, 977, 1205, 1230
CviQI	GTAC	5 cut(s)	84, 1259, 1326, 1360, 1396
DdeI	CTNAG	6 cut(s)	727, 781, 949, 971, 1149, 1284
DpnI	GATC	5 cut(s)	39, 327, 1144, 1245, 1332
DpnII	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
EaeI	YGGCCR	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	1229
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	3 cut(s)	231, 1317, 1406
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRII	CCWGG	4 cut(s)	136, 692, 1168, 1252
EcoT14I	CCWWGG	1 cut(s)	1229
ErhI	CCWWGG	1 cut(s)	1229
FaeI	CATG	4 cut(s)	865, 980, 1208, 1233
FaqI	GGGAC	2 cut(s)	385, 754
FatI	CATG	4 cut(s)	861, 976, 1204, 1229
FauI	CCCGC	1 cut(s)	1383
FauNDI	CATATG	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	518, 834
FokI	GGATG	6 cut(s)	192, 287, 748, 814, 1053, 1198
Fsp4HI	GCNGC	2 cut(s)	518, 834
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	1203
GluI	GCNGC	2 cut(s)	518, 834
GsaI	CCCAGC	1 cut(s)	1049
GsuI	CTGGAG	2 cut(s)	159, 1275
HaeIII	GGCC	3 cut(s)	692, 797, 1227
HapII	CCGG	3 cut(s)	798, 1218, 1312
HhaI	GCGC	1 cut(s)	1204
Hin1II	CATG	4 cut(s)	865, 980, 1208, 1233
Hin6I	GCGC	1 cut(s)	1202
HinP1I	GCGC	1 cut(s)	1202
HincII	GTYRAC	1 cut(s)	1175
HindII	GTYRAC	1 cut(s)	1175
HindIII	AAGCTT	1 cut(s)	919
HinfI	GANTC	3 cut(s)	74, 296, 1280
HpaII	CCGG	3 cut(s)	798, 1218, 1312
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	84, 86, 1175
Hpy188III	TCNNGA	6 cut(s)	209, 240, 290, 868, 1161, 1218
Hpy8I	GTNNAC	3 cut(s)	84, 86, 1175
HpyAV	CCTTC	6 cut(s)	4, 58, 106, 496, 760, 1272
HpyCH4III	ACNGT	3 cut(s)	591, 1193, 1325
HpyCH4V	TGCA	5 cut(s)	191, 278, 658, 705, 771
HpyF10VI	GCNNNNNNNGC	6 cut(s)	393, 550, 593, 723, 1051, 1060
HpyF3I	CTNAG	6 cut(s)	727, 781, 949, 971, 1149, 1284
Hsp92II	CATG	4 cut(s)	865, 980, 1208, 1233
HspAI	GCGC	1 cut(s)	1202
Kpn2I	TCCGGA	1 cut(s)	1217
Kzo9I	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	820
LweI	GCATC	2 cut(s)	265, 515
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	39, 327, 1144, 1245, 1332
MboI	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
MboII	GAAGA	8 cut(s)	37, 155, 224, 374, 538, 937, 1143, 1310
MfeI	CAATTG	1 cut(s)	996
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	2 cut(s)	996, 1066
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	678, 1018
MnlI	CCTC	9 cut(s)	186, 246, 286, 390, 436, 543, 947, 1225, 1303
MroI	TCCGGA	1 cut(s)	1217
MseI	TTAA	3 cut(s)	710, 1188, 1319
MspCI	CTTAAG	1 cut(s)	709
MspI	CCGG	3 cut(s)	798, 1218, 1312
MspR9I	CCNGG	5 cut(s)	138, 694, 799, 1170, 1254
MunI	CAATTG	1 cut(s)	996
Mva1269I	GAATGC	3 cut(s)	34, 962, 1170
MvaI	CCWGG	4 cut(s)	138, 694, 1170, 1254
MwoI	GCNNNNNNNGC	6 cut(s)	393, 550, 593, 723, 1051, 1060
NciI	CCSGG	1 cut(s)	799
NcoI	CCATGG	1 cut(s)	1229
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
NlaIII	CATG	4 cut(s)	865, 980, 1208, 1233
NlaIV	GGNNCC	2 cut(s)	288, 424
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	1208
PaeI	GCATGC	1 cut(s)	1208
PctI	GAATGC	3 cut(s)	34, 962, 1170
PfeI	GAWTC	2 cut(s)	74, 1280
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	519, 835
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	235
PsiI	TTATAA	1 cut(s)	941
Psp6I	CCWGG	4 cut(s)	136, 692, 1168, 1252
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	1045
PspGI	CCWGG	4 cut(s)	136, 692, 1168, 1252
PspN4I	GGNNCC	2 cut(s)	288, 424
PspPI	GGNCC	2 cut(s)	287, 1226
RsaI	GTAC	5 cut(s)	85, 1260, 1327, 1361, 1397
RsaNI	GTAC	5 cut(s)	84, 1259, 1326, 1360, 1396
SaqAI	TTAA	3 cut(s)	710, 1188, 1319
SatI	GCNGC	2 cut(s)	518, 834
Sau3AI	GATC	5 cut(s)	37, 325, 1142, 1243, 1330
Sau96I	GGNCC	2 cut(s)	287, 1226
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	5 cut(s)	138, 694, 799, 1170, 1254
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	2 cut(s)	265, 515
SfcI	CTRYAG	2 cut(s)	33, 545
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	709, 1081
SmoI	CTYRAG	2 cut(s)	709, 1081
SphI	GCATGC	1 cut(s)	1208
Sse9I	AATT	2 cut(s)	996, 1066
SsiI	CCGC	2 cut(s)	518, 1390
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	5 cut(s)	136, 692, 797, 1168, 1252
StyI	CCWWGG	1 cut(s)	1229
TaaI	ACNGT	3 cut(s)	591, 1193, 1325
TaqI	TCGA	2 cut(s)	463, 869
TasI	AATT	2 cut(s)	996, 1066
TatI	WGTACW	3 cut(s)	83, 1325, 1395
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	74, 1280
Tru1I	TTAA	3 cut(s)	710, 1188, 1319
Tru9I	TTAA	3 cut(s)	710, 1188, 1319
TscAI	CASTG	7 cut(s)	93, 193, 594, 975, 1198, 1276, 1282
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	357, 841, 850, 1200, 1317
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	7 cut(s)	93, 193, 594, 975, 1198, 1276, 1282
Vha464I	CTTAAG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	1208
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.