Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003374

Physical Location & Seq

Genomic Coordinates Reverse (-)

54139411 .. 54144516

Gene Structure 5106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGGCTCGGAAGTCTAATCAACAGAAGAATGGGGTTGATCGGCAGACGTCAAAGCAAAAGAAGAAGGGTTCGGAGTCAGGGGGTACACCCGCAGAAACGAAAGCGAATGGGAAAGCAAGTGAGGTGAAAGTTTTCCCTGGAGAAGAAATCTCAAATGGTGACCAGCCAAGCAGTCCTCTTTCAGCAGGTGTGAGTAAAACCAATCATGCTGGAGATGAGAATAAAAGCAAGCAAAAACCTGGGAAGGTTTTCAGGAAAGAGAATCAAGGGACGGATCCAATGCCGGGTCAAGGGCAGTCGACGTCTTCAGGAAGTGATTCAGGAAATTGCAATGGAAATAATGAAGCTCCAAGCATAAGAGAGCATAATGGGCCGTTACCCCATAGTGAAATACGTCGCAAACATGCAAAAAGAAAATCAGGTTACTCACTGAATCGGCATGTAAAAAATCTGATGGGGAAGATAGAGTCTTCAGATAGCGTATTGGTTAGAAATTTGAGGGCATCAACATTGTCCTTCTTGAAAGTGGCTAATGAATGGCTGCAGAGGCACAAACCTATGATTCTGACTGTAACAAGTAAAGTACAGAATGGTCGTGATTATGTCCAAACAAAGGTTGATCAGGCATATCCTATAGTTAAGAAGTGGCTTACGCAGCTTTGGAGTGTGCTGTTTATTATATCAATGCTTTGGTTCAATTTTACCTTAAGGGGTATCGATTCCTTCGTACGCATGGGGACAACATCCTTGTTTTCAGTGATATGGTTCAGCATTCTCTCAGTAGTTTCTATGGTTGGGATGTTTAAATTCCTGATTGTCTTGGTCTCAGCAGCTTTAATTGGAGTTTTCATTGGGTTCATGCTTGCAATTTTATTGGTTGCTCTTTCTGGAGCTCTTTTCTTGTGGCTTTATGGAAGCTTTTGGACAACAGTACTTGTAATCTTCTTTGGAGGTTTGGCATTCACTCTGAGCCATGAGCGGGTTGCACTGTTAATTGCAACTGTGTATTCCATGTATTGTGCTTGGACGTATGTTGGATGGCTGGGTGTGCTCTTGGGGTTAAATTTATCTTTTATCTCAAGTGAGTGTCTAATATATTTCTTAAAGAACAACGTAAATCATAATACAAGACCTACCGGATCCCCTGAACAAACATCTGGAATGCACGATCAACAAGGCTTCTTCAATGGTGAGCATGTGCATTCCTCATCCTCAGAAAATGGCCCATGGTTTTCTGCTGATCGTAGCCCTGGAGTGCCTTCAACCAGTGGGGCTGATTCAGAGTTAACTTCTGAAGATGAAATTGTTCGGCTGCTAAATTGTACTGACCACTATTCAGTGCTGGGATTCTCTCGCTATGAAGACGTAGATATTTCTTTACTGAAGCGAGAGTATAAGAAAAAGGCAATGTTGGTCCATCCTGATAAGAATATGGGAAATGAAAAGGCTGCTGAAGCTTTCAAGAAACTACAGAATGCATATGAGGTTTTACTTGATTCCTTGAAGCGAAAAGCATATGATGACGAATTAAGGAGCCAGGAACTGCTGAACATTTTCCGTAGGTTTAAAAGTGCTTCACAAAAGGATGGAGGAAACGGTTTCTTCCCCTCTGGATTTGGAAGCCCAGAGGCTGATGGTGAGGACCCATTTGGAGAGTCAAGGCGAATCGCCTGCAATAAGTGCAACAACTTTCATACCTGGTCACTCACCAGAAAATCAAAATCTAGAGCAAGATGGTGCCAGGATTGCAAAGATTTTCATCAAGCGAAAGATGGTGATGGATGGGTTGAACAATCTTCACAACCTTTCTTCTTTGGATTATTGCAGAAGGTAGATACTCCATCTGCATTTGTTTGTGCAGATAGCAAGATATATAATGCTAGCGAGTGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACACACAAACCTAGTTTTCATGTGAACACTAGTGTGACCTCTACGAAGCACAATTCTGGAAAGGGAACAAATTCAGGACAAAGAGGCGGGCGGATGCCAGCATCTGTTGAAGAGTGCATGACAGAGGAAGAATTTGTTGAGTGGCTACAAAATGCAATGCAAACAGGCATGTATGAGAATTTTAGTGCCGGCACCTCCACTGAGAGCCCTTCTGCCAAATCTGGAAATGGTACCAAGACTAGTGGCAGTGCTAACAAGAGAAAGAAAAAGGGAAAGAAGCAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Jiv90

Protein Analysis

736

Amino Acids

81.69

Weight (kDa)

9.32

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	443 - 507	1.6e-17	DnaJ domain
Jiv90	PF14901	552 - 650	8.9e-37	Cleavage inducing molecular chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49580 AT5G49580 AT5G49580
fragaria_vesca	FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670
malus_domestica	MD13G1148800.v1.1 MD13G1148900.v1.1 MD16G1149100.v1.1
prunus_persica	Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1
pyrus_communis	pycom13g12810 pycom16g12740 pycom16g12770
rosa_chinensis	RchiOBHm_Chr4g0426071
rosa_laevigata	RLG00000007319
rosa_multiflora	Rmu_co8183128.1_g000001 Rmu_ssc0000281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368080
rosa_rugosa	Rorug04G0208800 Rorug04G0208900
rosa_samantha	Rh4AG265400 Rh4BG271500 Rh4CG284400 Rh4DG267700
rosa_wichuraiana	Rw4G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
AatII	GACGTC	2 cut(s)	50, 305
Acc36I	ACCTGC	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	2153
AccB1I	GGYRCC	3 cut(s)	1737, 2114, 2153
AccBSI	CCGCTC	1 cut(s)	979
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	4 cut(s)	90, 979, 2010, 2014
AclWI	GGATC	4 cut(s)	269, 282, 1134, 1147
AcsI	RAATTY	6 cut(s)	493, 806, 1063, 1993, 2054, 2101
AcuI	CTGAAG	5 cut(s)	291, 456, 1314, 1403, 1473
AcyI	GRCGYC	2 cut(s)	47, 302
AfaI	GTAC	6 cut(s)	85, 585, 729, 933, 1324, 2155
AfiI	CCNNNNNNNGG	4 cut(s)	284, 290, 613, 979
AflII	CTTAAG	1 cut(s)	706
AgsI	TTSAA	8 cut(s)	523, 697, 1186, 1263, 1462, 1504, 1790, 2033
AhlI	ACTAGT	2 cut(s)	1952, 2162
AjnI	CCWGG	6 cut(s)	136, 238, 1249, 1536, 1697, 1740
AleI	CACNNNNGTG	1 cut(s)	1955
AluBI	AGCT	6 cut(s)	347, 658, 833, 893, 918, 1457
AluI	AGCT	6 cut(s)	347, 658, 833, 893, 918, 1457
Alw21I	GWGCWC	2 cut(s)	895, 1053
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	4 cut(s)	269, 282, 1134, 1147
AlwNI	CAGNNNCTG	3 cut(s)	1543, 1631, 2027
AoxI	GGCC	2 cut(s)	371, 1222
ApeKI	GCWGC	5 cut(s)	541, 655, 830, 1312, 1448
ApoI	RAATTY	6 cut(s)	493, 806, 1063, 1993, 2054, 2101
Asp700I	GAANNNNTTC	6 cut(s)	131, 248, 316, 1305, 1553, 1993
Asp718I	GGTACC	1 cut(s)	2153
AspS9I	GGNCC	4 cut(s)	371, 1223, 1414, 1642
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	6 cut(s)	136, 170, 1202, 1649, 1699, 1787
AsuNHI	GCTAGC	1 cut(s)	1880
AvaII	GGWCC	2 cut(s)	1414, 1642
BamHI	GGATCC	2 cut(s)	274, 1139
BanI	GGYRCC	3 cut(s)	1737, 2114, 2153
BanII	GRGCYC	2 cut(s)	895, 2132
BbsI	GAAGAC	3 cut(s)	297, 462, 1368
Bbv12I	GWGCWC	2 cut(s)	895, 1053
BbvI	GCAGC	5 cut(s)	528, 667, 842, 1299, 1435
BceAI	ACGGC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	1653, 1687
BciT130I	CCWGG	6 cut(s)	138, 240, 1251, 1538, 1699, 1742
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	829
BcuI	ACTAGT	2 cut(s)	1952, 2162
BfaI	CTAG	5 cut(s)	1725, 1881, 1935, 1953, 2163
BfmI	CTRYAG	3 cut(s)	542, 633, 1469
BfrI	CTTAAG	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	542, 656, 831, 1313, 1449
BlsI	GCNGC	5 cut(s)	543, 657, 832, 1314, 1450
BmcAI	AGTACT	1 cut(s)	933
Bme1390I	CCNGG	7 cut(s)	138, 240, 285, 1251, 1538, 1699, 1742
Bme18I	GGWCC	2 cut(s)	1414, 1642
BmgT120I	GGNCC	4 cut(s)	371, 1223, 1414, 1642
BmiI	GGNNCC	7 cut(s)	276, 1141, 1535, 1644, 1739, 2116, 2155
BmrFI	CCNGG	7 cut(s)	138, 240, 285, 1251, 1538, 1699, 1742
BmsI	GCATC	3 cut(s)	512, 2007, 2033
BmtI	GCTAGC	1 cut(s)	1884
BpiI	GAAGAC	3 cut(s)	297, 462, 1368
BpmI	CTGGAG	4 cut(s)	159, 231, 909, 1272
BpuEI	CTTGAG	1 cut(s)	1063
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	1758
BsaHI	GRCGYC	2 cut(s)	47, 302
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	4 cut(s)	136, 239, 1226, 1249
BsaWI	WCCGGW	1 cut(s)	1136
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 290, 613, 979
Bse118I	RCCGGY	1 cut(s)	2111
Bse1I	ACTGG	1 cut(s)	1266
Bse3DI	GCAATG	4 cut(s)	337, 1413, 2085, 2210
Bse8I	GATNNNNATC	1 cut(s)	1758
BseBI	CCWGG	6 cut(s)	138, 240, 1251, 1538, 1699, 1742
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	4 cut(s)	136, 239, 1226, 1249
BseGI	GGATG	8 cut(s)	743, 804, 1043, 1208, 1417, 1591, 1787, 2022
BseJI	GATNNNNATC	1 cut(s)	1758
BseLI	CCNNNNNNNGG	4 cut(s)	284, 290, 613, 979
BseMI	GCAATG	4 cut(s)	337, 1413, 2085, 2210
BseMII	CTCAG	5 cut(s)	792, 840, 959, 1227, 2115
BseNI	ACTGG	1 cut(s)	1266
BseXI	GCAGC	5 cut(s)	528, 667, 842, 1299, 1435
BseYI	CCCAGC	2 cut(s)	1042, 1342
BsgI	GTGCAG	1 cut(s)	1878
BshFI	GGCC	2 cut(s)	373, 1224
BshNI	GGYRCC	3 cut(s)	1737, 2114, 2153
BshVI	ATCGAT	1 cut(s)	717
BsiHKAI	GWGCWC	2 cut(s)	895, 1053
BsiSI	CCGG	3 cut(s)	284, 1137, 2112
BsiWI	CGTACG	1 cut(s)	727
BslFI	GGGAC	2 cut(s)	283, 751
BslI	CCNNNNNNNGG	4 cut(s)	284, 290, 613, 979
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	2 cut(s)	283, 751
BsmI	GAATGC	5 cut(s)	771, 959, 1167, 1201, 1480
BsnI	GGCC	2 cut(s)	373, 1224
Bso31I	GGTCTC	1 cut(s)	829
Bsp1286I	GDGCHC	3 cut(s)	895, 1053, 2132
Bsp143I	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
Bsp19I	CCATGG	1 cut(s)	1226
BspACI	CCGC	4 cut(s)	90, 979, 2010, 2014
BspANI	GGCC	2 cut(s)	373, 1224
BspCNI	CTCAG	5 cut(s)	791, 839, 960, 1226, 2116
BspDI	ATCGAT	1 cut(s)	717
BspLI	GGNNCC	7 cut(s)	276, 1141, 1535, 1644, 1739, 2116, 2155
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	176
BspOI	GCTAGC	1 cut(s)	1884
BspPI	GGATC	4 cut(s)	269, 282, 1134, 1147
BspT107I	GGYRCC	3 cut(s)	1737, 2114, 2153
BspTI	CTTAAG	1 cut(s)	706
BspTNI	GGTCTC	1 cut(s)	829
BsrBI	CCGCTC	1 cut(s)	979
BsrDI	GCAATG	4 cut(s)	337, 1413, 2085, 2210
BsrFI	RCCGGY	1 cut(s)	2111
BsrI	ACTGG	1 cut(s)	1266
BssAI	RCCGGY	1 cut(s)	2111
BssECI	CCNNGG	4 cut(s)	136, 239, 1226, 1249
BssMI	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
BssNI	GRCGYC	2 cut(s)	47, 302
BssT1I	CCWWGG	1 cut(s)	1226
Bst2UI	CCWGG	6 cut(s)	138, 240, 1251, 1538, 1699, 1742
Bst4CI	ACNGT	5 cut(s)	571, 931, 990, 1003, 1598
Bst6I	CTCTTC	1 cut(s)	2028
BstACI	GRCGYC	2 cut(s)	47, 302
BstAFI	CTTAAG	1 cut(s)	706
BstAPI	GCANNNNNTGC	1 cut(s)	1680
BstC8I	GCNNGC	7 cut(s)	230, 864, 1672, 1882, 2012, 2022, 2113
BstDEI	CTNAG	5 cut(s)	778, 826, 968, 1213, 2124
BstDSI	CCRYGG	1 cut(s)	1226
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	8 cut(s)	743, 804, 1043, 1208, 1417, 1591, 1787, 2022
BstKTI	GATC	6 cut(s)	40, 277, 622, 1142, 1171, 1243
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
BstMWI	GCNNNNNNNGC	7 cut(s)	370, 547, 655, 1048, 1454, 1680, 1746
BstNI	CCWGG	6 cut(s)	138, 240, 1251, 1538, 1699, 1742
BstNSI	RCATGY	4 cut(s)	407, 443, 1199, 2095
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	7 cut(s)	136, 238, 283, 1249, 1536, 1697, 1740
BstSFI	CTRYAG	3 cut(s)	542, 633, 1469
BstV1I	GCAGC	5 cut(s)	528, 667, 842, 1299, 1435
BstV2I	GAAGAC	3 cut(s)	297, 462, 1368
BstX2I	RGATCY	2 cut(s)	274, 1139
BstYI	RGATCY	2 cut(s)	274, 1139
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	373, 1224
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	1226
BtsCI	GGATG	8 cut(s)	743, 804, 1043, 1208, 1417, 1591, 1787, 2022
BtsI	GCAGTG	1 cut(s)	2176
BtsIMutI	CAGTG	7 cut(s)	428, 762, 986, 1273, 1344, 2121, 2176
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	7 cut(s)	230, 864, 1672, 1882, 2012, 2022, 2113
CaiI	CAGNNNCTG	3 cut(s)	1543, 1631, 2027
Cfr10I	RCCGGY	1 cut(s)	2111
Cfr13I	GGNCC	4 cut(s)	371, 1223, 1414, 1642
ClaI	ATCGAT	1 cut(s)	717
CsiI	ACCWGGT	1 cut(s)	1697
Csp6I	GTAC	6 cut(s)	84, 584, 728, 932, 1323, 2154
CspCI	CAANNNNNGTGG	2 cut(s)	2146, 2181
CviQI	GTAC	6 cut(s)	84, 584, 728, 932, 1323, 2154
DdeI	CTNAG	5 cut(s)	778, 826, 968, 1213, 2124
DpnI	GATC	6 cut(s)	39, 276, 621, 1141, 1170, 1242
DpnII	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
DraI	TTTAAA	2 cut(s)	805, 1567
Eam1104I	CTCTTC	1 cut(s)	2028
EarI	CTCTTC	1 cut(s)	2028
EciI	GGCGGA	1 cut(s)	2029
Ecl136II	GAGCTC	1 cut(s)	893
Eco130I	CCWWGG	1 cut(s)	1226
Eco24I	GRGCYC	2 cut(s)	895, 2132
Eco31I	GGTCTC	1 cut(s)	829
Eco47I	GGWCC	2 cut(s)	1414, 1642
Eco53kI	GAGCTC	1 cut(s)	893
Eco57I	CTGAAG	5 cut(s)	291, 456, 1314, 1403, 1473
Eco91I	GGTNACC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	893
EcoO109I	RGGNCCY	1 cut(s)	1642
EcoO65I	GGTNACC	1 cut(s)	158
EcoRII	CCWGG	6 cut(s)	136, 238, 1249, 1536, 1697, 1740
EcoT14I	CCWWGG	1 cut(s)	1226
EcoT22I	ATGCAT	1 cut(s)	1480
EcoT38I	GRGCYC	2 cut(s)	895, 2132
ErhI	CCWWGG	1 cut(s)	1226
FaqI	GGGAC	2 cut(s)	283, 751
FauI	CCCGC	3 cut(s)	97, 972, 2003
FauNDI	CATATG	2 cut(s)	1480, 1516
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	5 cut(s)	542, 656, 831, 1313, 1449
FokI	GGATG	8 cut(s)	730, 811, 1050, 1195, 1404, 1598, 1794, 2029
FriOI	GRGCYC	2 cut(s)	895, 2132
Fsp4HI	GCNGC	5 cut(s)	542, 656, 831, 1313, 1449
FspBI	CTAG	5 cut(s)	1725, 1881, 1935, 1953, 2163
GluI	GCNGC	5 cut(s)	542, 656, 831, 1313, 1449
GsaI	CCCAGC	2 cut(s)	1046, 1346
GsuI	CTGGAG	4 cut(s)	159, 231, 909, 1272
HaeIII	GGCC	2 cut(s)	373, 1224
HapII	CCGG	3 cut(s)	284, 1137, 2112
Hin1I	GRCGYC	2 cut(s)	47, 302
HincII	GTYRAC	2 cut(s)	300, 1287
HindII	GTYRAC	2 cut(s)	300, 1287
HindIII	AAGCTT	2 cut(s)	916, 1455
HpaI	GTTAAC	1 cut(s)	1287
HpaII	CCGG	3 cut(s)	284, 1137, 2112
HphI	GGTGA	6 cut(s)	136, 170, 1202, 1649, 1699, 1787
Hpy166II	GTNNAC	4 cut(s)	86, 300, 1287, 1948
Hpy188I	TCNGA	9 cut(s)	9, 73, 453, 475, 567, 969, 1216, 1282, 1294
Hpy8I	GTNNAC	4 cut(s)	86, 300, 1287, 1948
Hpy99I	CGWCG	2 cut(s)	304, 399
HpyAV	CCTTC	7 cut(s)	58, 238, 526, 733, 1269, 1822, 2142
HpyCH4III	ACNGT	5 cut(s)	571, 931, 990, 1003, 1598
HpyCH4IV	ACGT	6 cut(s)	47, 302, 394, 1028, 1113, 1365
HpyF10VI	GCNNNNNNNGC	7 cut(s)	370, 547, 655, 1048, 1454, 1680, 1746
HpyF3I	CTNAG	5 cut(s)	778, 826, 968, 1213, 2124
HpySE526I	ACGT	6 cut(s)	47, 302, 394, 1028, 1113, 1365
Hsp92I	GRCGYC	2 cut(s)	47, 302
KpnI	GGTACC	1 cut(s)	2157
KroI	GCCGGC	1 cut(s)	2111
KroNI	GCCGGC	1 cut(s)	2113
Ksp22I	TGATCA	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	1287
Kzo9I	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
LmnI	GCTCC	3 cut(s)	352, 890, 1533
Lsp1109I	GCAGC	5 cut(s)	528, 667, 842, 1299, 1435
LweI	GCATC	3 cut(s)	512, 2007, 2033
MabI	ACCWGGT	1 cut(s)	1697
MaeI	CTAG	5 cut(s)	1725, 1881, 1935, 1953, 2163
MaeII	ACGT	6 cut(s)	47, 302, 394, 1028, 1113, 1365
MaeIII	GTNAC	6 cut(s)	158, 375, 422, 571, 1701, 1957
MalI	GATC	6 cut(s)	39, 276, 621, 1141, 1170, 1242
MbiI	CCGCTC	1 cut(s)	979
MboI	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
MflI	RGATCY	2 cut(s)	274, 1139
MhlI	GDGCHC	3 cut(s)	895, 1053, 2132
MlyI	GAGTC	3 cut(s)	83, 476, 1664
MmeI	TCCRAC	1 cut(s)	1015
Mph1103I	ATGCAT	1 cut(s)	1480
MroNI	GCCGGC	1 cut(s)	2111
MroXI	GAANNNNTTC	6 cut(s)	131, 248, 316, 1305, 1553, 1993
MslI	CAYNNNNRTG	1 cut(s)	1955
MspCI	CTTAAG	1 cut(s)	706
MspI	CCGG	3 cut(s)	284, 1137, 2112
MspR9I	CCNGG	7 cut(s)	138, 240, 285, 1251, 1538, 1699, 1742
Mva1269I	GAATGC	5 cut(s)	771, 959, 1167, 1201, 1480
MvaI	CCWGG	6 cut(s)	138, 240, 1251, 1538, 1699, 1742
MwoI	GCNNNNNNNGC	7 cut(s)	370, 547, 655, 1048, 1454, 1680, 1746
NaeI	GCCGGC	1 cut(s)	2113
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	1226
NdeI	CATATG	2 cut(s)	1480, 1516
NdeII	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
NgoMIV	GCCGGC	1 cut(s)	2111
NheI	GCTAGC	1 cut(s)	1880
NlaIV	GGNNCC	7 cut(s)	276, 1141, 1535, 1644, 1739, 2116, 2155
NmuCI	GTSAC	3 cut(s)	158, 1701, 1957
NsiI	ATGCAT	1 cut(s)	1480
NspI	RCATGY	4 cut(s)	407, 443, 1199, 2095
OliI	CACNNNNGTG	1 cut(s)	1955
PaqCI	CACCTGC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PctI	GAATGC	5 cut(s)	771, 959, 1167, 1201, 1480
PdiI	GCCGGC	1 cut(s)	2113
PdmI	GAANNNNTTC	6 cut(s)	131, 248, 316, 1305, 1553, 1993
PfeI	GAWTC	9 cut(s)	262, 317, 433, 562, 719, 1277, 1347, 1496, 1665
Pfl23II	CGTACG	1 cut(s)	727
PkrI	GCNGC	5 cut(s)	543, 657, 832, 1314, 1450
PleI	GAGTC	3 cut(s)	82, 475, 1663
PpsI	GAGTC	3 cut(s)	82, 475, 1663
PpuMI	RGGWCCY	1 cut(s)	1642
Psp124BI	GAGCTC	1 cut(s)	895
Psp5II	RGGWCCY	1 cut(s)	1642
Psp6I	CCWGG	6 cut(s)	136, 238, 1249, 1536, 1697, 1740
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	2 cut(s)	1042, 1342
PspGI	CCWGG	6 cut(s)	136, 238, 1249, 1536, 1697, 1740
PspLI	CGTACG	1 cut(s)	727
PspN4I	GGNNCC	7 cut(s)	276, 1141, 1535, 1644, 1739, 2116, 2155
PspPI	GGNCC	4 cut(s)	371, 1223, 1414, 1642
PspPPI	RGGWCCY	1 cut(s)	1642
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	3 cut(s)	1543, 1631, 2027
PsuI	RGATCY	2 cut(s)	274, 1139
RsaI	GTAC	6 cut(s)	85, 585, 729, 933, 1324, 2155
RsaNI	GTAC	6 cut(s)	84, 584, 728, 932, 1323, 2154
RseI	CAYNNNNRTG	1 cut(s)	1955
SacI	GAGCTC	1 cut(s)	895
SalI	GTCGAC	1 cut(s)	298
SatI	GCNGC	5 cut(s)	542, 656, 831, 1313, 1449
Sau3AI	GATC	6 cut(s)	37, 274, 619, 1139, 1168, 1240
Sau96I	GGNCC	4 cut(s)	371, 1223, 1414, 1642
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	3 cut(s)	83, 476, 1664
ScrFI	CCNGG	7 cut(s)	138, 240, 285, 1251, 1538, 1699, 1742
SduI	GDGCHC	3 cut(s)	895, 1053, 2132
SexAI	ACCWGGT	1 cut(s)	1697
SfaNI	GCATC	3 cut(s)	512, 2007, 2033
SfcI	CTRYAG	3 cut(s)	542, 633, 1469
SinI	GGWCC	2 cut(s)	1414, 1642
SmiMI	CAYNNNNRTG	1 cut(s)	1955
SmlI	CTYRAG	2 cut(s)	706, 1078
SmoI	CTYRAG	2 cut(s)	706, 1078
SpeI	ACTAGT	2 cut(s)	1952, 2162
SsiI	CCGC	4 cut(s)	90, 979, 2010, 2014
SspMI	CTAG	5 cut(s)	1725, 1881, 1935, 1953, 2163
SstI	GAGCTC	1 cut(s)	895
StyD4I	CCNGG	7 cut(s)	136, 238, 283, 1249, 1536, 1697, 1740
StyI	CCWWGG	1 cut(s)	1226
TaaI	ACNGT	5 cut(s)	571, 931, 990, 1003, 1598
TaiI	ACGT	6 cut(s)	50, 305, 397, 1031, 1116, 1368
TaqI	TCGA	2 cut(s)	299, 717
TatI	WGTACW	3 cut(s)	583, 931, 1322
TfiI	GAWTC	9 cut(s)	262, 317, 433, 562, 719, 1277, 1347, 1496, 1665
TscAI	CASTG	7 cut(s)	435, 762, 993, 1273, 1344, 2128, 2176
TseFI	GTSAC	3 cut(s)	158, 1701, 1957
TseI	GCWGC	5 cut(s)	541, 655, 830, 1312, 1448
Tsp45I	GTSAC	3 cut(s)	158, 1701, 1957
TspGWI	ACGGA	2 cut(s)	287, 1547
TspRI	CASTG	7 cut(s)	435, 762, 993, 1273, 1344, 2128, 2176
Vha464I	CTTAAG	1 cut(s)	706
VpaK11BI	GGWCC	2 cut(s)	1414, 1642
XapI	RAATTY	6 cut(s)	493, 806, 1063, 1993, 2054, 2101
XbaI	TCTAGA	1 cut(s)	1724
XceI	RCATGY	4 cut(s)	407, 443, 1199, 2095
XmiI	GTMKAC	1 cut(s)	299
XmnI	GAANNNNTTC	6 cut(s)	131, 248, 316, 1305, 1553, 1993
XspI	CTAG	5 cut(s)	1725, 1881, 1935, 1953, 2163
ZraI	GACGTC	2 cut(s)	48, 303
ZrmI	AGTACT	1 cut(s)	933
Zsp2I	ATGCAT	1 cut(s)	1480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.