Rmu_co8183128.1_g000001

Cleavage inducing molecular chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8183128.1
OG0003374
Physical Location & Seq
Reverse (-)
140 .. 647
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8183128.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
atgtcaaatgtgcaggtagatactccatctgcatttgtttgtgcagatagcaagatatataatgctagcgagtggtatatttgtcagggaatgagatgtccagccaacacacacaaacctagttttcatgtgaacactagtgtgacctctacgaagcacaattctggaaagggaacaaattcaggacaaagaggcgggcggatgccagcatctgttgaagagtgcatgacagaggaagaatttgttgagtggctacaaaatgcaatgcaaacaggcatgtatgagaattttagtgccggcacctccactgagagcccttctgccaaatctggaaatggtaccaagactagtggcagtgctaacaagagaaagaaaaaggggaagaagcaatggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Jiv90

Protein Analysis

131

Amino Acids

14.27

Weight (kDa)

9.12

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 299, 338
AciI CCGC 2 cut(s) 195, 199
AcsI RAATTY 3 cut(s) 178, 239, 286
AfaI GTAC 1 cut(s) 340
AgsI TTSAA 1 cut(s) 218
AhlI ACTAGT 2 cut(s) 137, 347
AleI CACNNNNGTG 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 212
ApoI RAATTY 3 cut(s) 178, 239, 286
Asp700I GAANNNNTTC 1 cut(s) 178
Asp718I GGTACC 1 cut(s) 338
AsuNHI GCTAGC 1 cut(s) 65
BanI GGYRCC 2 cut(s) 299, 338
BanII GRGCYC 1 cut(s) 317
BccI CCATC 1 cut(s) 34
BcuI ACTAGT 2 cut(s) 137, 347
BfaI CTAG 4 cut(s) 66, 120, 138, 348
BfuAI ACCTGC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 301, 340
BmsI GCATC 2 cut(s) 192, 218
BmtI GCTAGC 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 270, 395
BseGI GGATG 1 cut(s) 207
BseMI GCAATG 2 cut(s) 270, 395
BseMII CTCAG 1 cut(s) 300
BsgI GTGCAG 2 cut(s) 32, 63
BshNI GGYRCC 2 cut(s) 299, 338
BsiSI CCGG 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 317
BspACI CCGC 2 cut(s) 195, 199
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 301, 340
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 69
BspT107I GGYRCC 2 cut(s) 299, 338
BsrDI GCAATG 2 cut(s) 270, 395
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 67, 197, 207, 298
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 280
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 306, 361
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 4 cut(s) 67, 197, 207, 298
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 1 cut(s) 339
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 3 cut(s) 128, 226, 277
CviJI RGCY 3 cut(s) 104, 253, 315
CviKI_1 RGCY 3 cut(s) 104, 253, 315
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 3 cut(s) 131, 229, 280
FaiI YATR 7 cut(s) 58, 60, 78, 129, 227, 278, 282
FatI CATG 3 cut(s) 127, 225, 276
FauI CCCGC 1 cut(s) 188
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 317
FspBI CTAG 4 cut(s) 66, 120, 138, 348
HapII CCGG 1 cut(s) 297
Hin1II CATG 3 cut(s) 131, 229, 280
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 3 cut(s) 165, 183, 330
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 327
HpyCH4V TGCA 6 cut(s) 13, 32, 44, 225, 263, 268
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 3 cut(s) 131, 229, 280
KpnI GGTACC 1 cut(s) 342
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
LpnPI CCDG 8 cut(s) 71, 114, 150, 168, 219, 258, 310, 315
LweI GCATC 2 cut(s) 192, 218
MaeI CTAG 4 cut(s) 66, 120, 138, 348
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 3 cut(s) 230, 248, 394
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 4 cut(s) 160, 178, 239, 286
MnlI CCTC 4 cut(s) 157, 185, 226, 313
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 297
NaeI GCCGGC 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 296
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 3 cut(s) 131, 229, 280
NlaIV GGNNCC 2 cut(s) 301, 340
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 301, 340
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 317
SetI ASST 4 cut(s) 18, 121, 149, 305
SfaNI GCATC 2 cut(s) 192, 218
SmiMI CAYNNNNRTG 1 cut(s) 140
SpeI ACTAGT 2 cut(s) 137, 347
Sse9I AATT 4 cut(s) 160, 178, 239, 286
SsiI CCGC 2 cut(s) 195, 199
SspMI CTAG 4 cut(s) 66, 120, 138, 348
TasI AATT 4 cut(s) 160, 178, 239, 286
TscAI CASTG 2 cut(s) 313, 361
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 2 cut(s) 313, 361
XapI RAATTY 3 cut(s) 178, 239, 286
XceI RCATGY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 178
XspI CTAG 4 cut(s) 66, 120, 138, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.