Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003374

Physical Location & Seq

Genomic Coordinates Forward (+)

36442975 .. 36444566

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0208800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGAGCAACCTAACTCAGTCGACTACCCTTCCTCAGCAAAACAACCAAGATGAAAGGGGAAATGAACAAGCTGGTGATAAAACTATAAGCCAGCAACAAATTGATGCATCAAACTGGCTCCCGATAACTGCTGATAGGAATGCAAAATGGTATTATTCGGCTTTCCACAATGTTACGGCGACTGTTGGTGCCGGAATTCTAGGGTTACCATATGCAATGTCACAACTTGGTTGGATTCCAGGAATCACAGTTATTGCTCTTTCTTGGTTGATCACCTTCTACTCGTTTTGGCAACTTGTGGAATTGCATGAGAGTGTGCCCGGAAAGCGATTCGATCGTTACCCAGAACTAGGGCAGCATTGTTTCGGACCCAAACTGGGGTATTGGATTATCATGCCACAACAAACTACTGTCCAAGTGGCTTCAGGCATTGTGTATTGCGTCACCGGTGGCAAATCATTGAAGAAAGTCTTTGAACTTCTCATTCCGGCATGGGGTGATATTAGAACAACTTACTTCATCCTTTTCTTTATTTGCTTGCAATTTGTGATATCTCAATCTCCAAATTTCAATTCTTTAAAGGGAGTTTCTTTGTTGGCTGCGGTCATGTCTTGTGGTTATTCTTTAATAGCATTTGTGGCATCAACAATCCAAGGTACGAAACATCATGAGAATATGAGCTATGGAGTTCGATCTTCTACAACTGCTGGTCAAGTCTTTGATATCTTGAATGGGTGTGGAACAATAGCATTTGCTTTTGCAGGACATAGTGTATCTCTAGAAATTCAAGCTACAATTCCTTCAACTCCAGAGAAACCATCAAAATATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTATTGTAGCATTTTGCTATATCCCGGTTGCAGTGTCTGGTTACTGGGCTTATGGCCGTCTTGTAGAGGATGATGTTCTCATATCACTAGATAAGCCTGCATGGCTAATTGCAGCGGCTAACTTTATGGTGTTTCTTCATGTTATTGGAAGCTACCAAGTTTTCAGTATGCCCGTGTTTGACCAGATCGAGCAATATTTGGTAGAAAATCGGGGTTTTACCCCTGGACGACCTTTGCGGATCATTGCTCGTAGTTTATATGTAGCCGCAGCAGGGTTTGTTGCAATGTGCATTCCATTTTTTGGAGGCTTATTAGGATTATTTGGAGGCTTGGTATTCTCCTCTATATCGTTTTATATGCCTTGTGTTATGTGGCTTATCACCCAAAAACCAAAAACATTTAGCTTTCATTGGCTTACTTCATGGGTATGCATTGTTATGGGCGTCCTGCTGGCAGTTCTTTCACCAATAGGAGGGGCACGTACAATTTACATGCAAGCCAAAACTTACCGTTTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Jiv90

Protein Analysis

460

Amino Acids

50.97

Weight (kDa)

8.73

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	47 - 444	2.6e-93	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	59 - 221	3.9e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49580 AT5G49580 AT5G49580
fragaria_vesca	FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670
malus_domestica	MD13G1148800.v1.1 MD13G1148900.v1.1 MD16G1149100.v1.1
prunus_persica	Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1
pyrus_communis	pycom13g12810 pycom16g12740 pycom16g12770
rosa_chinensis	RchiOBHm_Chr4g0426071
rosa_laevigata	RLG00000007319
rosa_multiflora	Rmu_co8183128.1_g000001 Rmu_ssc0000281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368080
rosa_rugosa	Rorug04G0208800 Rorug04G0208900
rosa_samantha	Rh4AG265400 Rh4BG271500 Rh4CG284400 Rh4DG267700
rosa_wichuraiana	Rw4G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	1160
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	4 cut(s)	602, 974, 1096, 1125
AclWI	GGATC	1 cut(s)	1106
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	3 cut(s)	195, 565, 783
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	1302
AfaI	GTAC	2 cut(s)	658, 1342
AfiI	CCNNNNNNNGG	7 cut(s)	350, 377, 378, 494, 1131, 1160, 1331
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	463, 476, 571, 730, 788, 804
AjnI	CCWGG	2 cut(s)	238, 1081
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AluBI	AGCT	6 cut(s)	71, 681, 791, 854, 1011, 1263
AluI	AGCT	6 cut(s)	71, 681, 791, 854, 1011, 1263
AlwI	GGATC	1 cut(s)	1106
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	4 cut(s)	355, 599, 971, 1127
ApoI	RAATTY	3 cut(s)	195, 565, 783
AsiGI	ACCGGT	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	321, 884
AsuHPI	GGTGA	6 cut(s)	86, 265, 436, 509, 1231, 1314
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	2 cut(s)	321, 1339
BanI	GGYRCC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	367, 586, 983, 1139
BccI	CCATC	1 cut(s)	826
BceAI	ACGGC	2 cut(s)	192, 900
BciT130I	CCWGG	2 cut(s)	240, 1083
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	321, 884
BfaI	CTAG	4 cut(s)	200, 350, 779, 947
BglI	GCCNNNNNGGC	1 cut(s)	961
BisI	GCNGC	6 cut(s)	356, 600, 972, 975, 1125, 1128
BlsI	GCNGC	6 cut(s)	357, 601, 973, 976, 1126, 1129
Bme1390I	CCNGG	4 cut(s)	240, 321, 884, 1083
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	3 cut(s)	119, 190, 370
BmrFI	CCNGG	4 cut(s)	240, 321, 884, 1083
BmrI	ACTGGG	2 cut(s)	386, 913
BmsI	GCATC	3 cut(s)	94, 116, 650
BmuI	ACTGGG	2 cut(s)	386, 913
BpmI	CTGGAG	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	321, 884
BsaAI	YACGTR	1 cut(s)	1340
BsaHI	GRCGYC	1 cut(s)	1302
BsaJI	CCNNGG	2 cut(s)	652, 1081
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	7 cut(s)	350, 377, 378, 494, 1131, 1160, 1331
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	119, 381, 908
Bse3DI	GCAATG	3 cut(s)	222, 1101, 1149
BseBI	CCWGG	2 cut(s)	240, 1083
BseDI	CCNNGG	2 cut(s)	652, 1081
BseGI	GGATG	2 cut(s)	519, 934
BseLI	CCNNNNNNNGG	7 cut(s)	350, 377, 378, 494, 1131, 1160, 1331
BseMI	GCAATG	3 cut(s)	222, 1101, 1149
BseMII	CTCAG	2 cut(s)	29, 47
BseNI	ACTGG	3 cut(s)	119, 381, 908
BseRI	GAGGAG	1 cut(s)	1189
BseSI	GKGCMC	2 cut(s)	321, 1339
BseXI	GCAGC	4 cut(s)	367, 586, 983, 1139
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	915
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	192, 321, 447, 488, 884
BslI	CCNNNNNNNGG	7 cut(s)	350, 377, 378, 494, 1131, 1160, 1331
BsmI	GAATGC	2 cut(s)	145, 1149
BsnI	GGCC	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	321, 1339
Bsp143I	GATC	5 cut(s)	270, 334, 692, 1044, 1098
BspACI	CCGC	4 cut(s)	602, 974, 1096, 1125
BspANI	GGCC	1 cut(s)	915
BspCNI	CTCAG	2 cut(s)	28, 46
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	3 cut(s)	119, 190, 370
BspPI	GGATC	1 cut(s)	1106
BspT107I	GGYRCC	1 cut(s)	188
BsrDI	GCAATG	3 cut(s)	222, 1101, 1149
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	119, 381, 908
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	652, 1081
BssMI	GATC	5 cut(s)	270, 334, 692, 1044, 1098
BssNI	GRCGYC	1 cut(s)	1302
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	240, 1083
Bst4CI	ACNGT	4 cut(s)	184, 250, 412, 1370
BstACI	GRCGYC	1 cut(s)	1302
BstBAI	YACGTR	1 cut(s)	1340
BstC8I	GCNNGC	5 cut(s)	92, 539, 957, 1311, 1356
BstDEI	CTNAG	3 cut(s)	15, 33, 1380
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	519, 934
BstKTI	GATC	5 cut(s)	273, 337, 695, 1047, 1101
BstMBI	GATC	5 cut(s)	270, 334, 692, 1044, 1098
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 638, 961
BstNI	CCWGG	2 cut(s)	240, 1083
BstNSI	RCATGY	1 cut(s)	1354
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	238, 319, 882, 1081
BstSLI	GKGCMC	2 cut(s)	321, 1339
BstV1I	GCAGC	4 cut(s)	367, 586, 983, 1139
BsuRI	GGCC	1 cut(s)	915
BtsCI	GGATG	2 cut(s)	519, 934
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	5 cut(s)	92, 539, 957, 1311, 1356
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	2 cut(s)	430, 1291
Csp6I	GTAC	2 cut(s)	657, 1341
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	9 cut(s)	308, 394, 492, 607, 668, 960, 998, 1281, 1351
CviQI	GTAC	2 cut(s)	657, 1341
DdeI	CTNAG	3 cut(s)	15, 33, 1380
DpnI	GATC	5 cut(s)	272, 336, 694, 1046, 1100
DpnII	GATC	5 cut(s)	270, 334, 692, 1044, 1098
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	652
Eco32I	GATATC	2 cut(s)	552, 724
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	238, 1081
EcoRV	GATATC	2 cut(s)	552, 724
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	2 cut(s)	109, 1292
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	9 cut(s)	311, 397, 495, 610, 671, 963, 1001, 1284, 1354
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FatI	CATG	9 cut(s)	307, 393, 491, 606, 667, 959, 997, 1280, 1350
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	6 cut(s)	356, 600, 972, 975, 1125, 1128
FokI	GGATG	2 cut(s)	506, 941
Fsp4HI	GCNGC	6 cut(s)	356, 600, 972, 975, 1125, 1128
FspBI	CTAG	4 cut(s)	200, 350, 779, 947
GluI	GCNGC	6 cut(s)	356, 600, 972, 975, 1125, 1128
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	915
HapII	CCGG	5 cut(s)	192, 321, 447, 488, 884
HgaI	GACGC	2 cut(s)	430, 1291
Hin1I	GRCGYC	1 cut(s)	1302
Hin1II	CATG	9 cut(s)	311, 397, 495, 610, 671, 963, 1001, 1284, 1354
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	3 cut(s)	235, 243, 330
HpaII	CCGG	5 cut(s)	192, 321, 447, 488, 884
HphI	GGTGA	6 cut(s)	86, 265, 436, 509, 1231, 1314
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	5 cut(s)	121, 668, 727, 779, 809
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	38, 286, 810
HpyCH4III	ACNGT	4 cut(s)	184, 250, 412, 1370
HpyCH4IV	ACGT	1 cut(s)	1339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 638, 961
HpyF3I	CTNAG	3 cut(s)	15, 33, 1380
HpySE526I	ACGT	1 cut(s)	1339
Hsp92I	GRCGYC	1 cut(s)	1302
Hsp92II	CATG	9 cut(s)	311, 397, 495, 610, 671, 963, 1001, 1284, 1354
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	5 cut(s)	270, 334, 692, 1044, 1098
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	4 cut(s)	367, 586, 983, 1139
LweI	GCATC	3 cut(s)	94, 116, 650
MaeI	CTAG	4 cut(s)	200, 350, 779, 947
MaeII	ACGT	1 cut(s)	1339
MaeIII	GTNAC	6 cut(s)	172, 204, 219, 338, 442, 899
MalI	GATC	5 cut(s)	272, 336, 694, 1046, 1100
MboI	GATC	5 cut(s)	270, 334, 692, 1044, 1098
MboII	GAAGA	3 cut(s)	475, 687, 986
MhlI	GDGCHC	2 cut(s)	321, 1339
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	42, 919, 1157, 1178, 1210, 1325
Mph1103I	ATGCAT	2 cut(s)	109, 1292
MseI	TTAA	2 cut(s)	578, 626
MslI	CAYNNNNRTG	3 cut(s)	312, 1285, 1295
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	5 cut(s)	192, 321, 447, 488, 884
MspR9I	CCNGG	4 cut(s)	240, 321, 884, 1083
Mva1269I	GAATGC	2 cut(s)	145, 1149
MvaI	CCWGG	2 cut(s)	240, 1083
MwoI	GCNNNNNNNGC	3 cut(s)	325, 638, 961
NciI	CCSGG	2 cut(s)	321, 884
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	5 cut(s)	270, 334, 692, 1044, 1098
NlaIII	CATG	9 cut(s)	311, 397, 495, 610, 671, 963, 1001, 1284, 1354
NlaIV	GGNNCC	3 cut(s)	119, 190, 370
NmuCI	GTSAC	2 cut(s)	219, 442
NsiI	ATGCAT	2 cut(s)	109, 1292
NspI	RCATGY	1 cut(s)	1354
PagI	TCATGA	1 cut(s)	667
PctI	GAATGC	2 cut(s)	145, 1149
PfeI	GAWTC	3 cut(s)	235, 243, 330
PflMI	CCANNNNNTGG	1 cut(s)	1160
PfoI	TCCNGGA	1 cut(s)	238
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	6 cut(s)	357, 601, 973, 976, 1126, 1129
Ple19I	CGATCG	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	1340
Psp6I	CCWGG	2 cut(s)	238, 1081
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	238, 1081
PspN4I	GGNNCC	3 cut(s)	119, 190, 370
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	896
PvuI	CGATCG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	658, 1342
RsaNI	GTAC	2 cut(s)	657, 1341
RseI	CAYNNNNRTG	3 cut(s)	312, 1285, 1295
SalI	GTCGAC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	578, 626
SatI	GCNGC	6 cut(s)	356, 600, 972, 975, 1125, 1128
Sau3AI	GATC	5 cut(s)	270, 334, 692, 1044, 1098
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	240, 321, 884, 1083
SduI	GDGCHC	2 cut(s)	321, 1339
SfaNI	GCATC	3 cut(s)	94, 116, 650
SgrAI	CRCCGGYG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	3 cut(s)	312, 1285, 1295
SsiI	CCGC	4 cut(s)	602, 974, 1096, 1125
SspI	AATATT	1 cut(s)	1055
SspMI	CTAG	4 cut(s)	200, 350, 779, 947
StyD4I	CCNGG	4 cut(s)	238, 319, 882, 1081
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	4 cut(s)	184, 250, 412, 1370
TaiI	ACGT	1 cut(s)	1342
TaqI	TCGA	4 cut(s)	20, 333, 691, 1047
TauI	GCSGC	2 cut(s)	977, 1127
TfiI	GAWTC	3 cut(s)	235, 243, 330
Tru1I	TTAA	2 cut(s)	578, 626
Tru9I	TTAA	2 cut(s)	578, 626
TscAI	CASTG	1 cut(s)	897
TseFI	GTSAC	2 cut(s)	219, 442
TseI	GCWGC	4 cut(s)	355, 599, 971, 1127
Tsp45I	GTSAC	2 cut(s)	219, 442
TspDTI	ATGAA	6 cut(s)	66, 78, 508, 986, 1256, 1269
TspRI	CASTG	1 cut(s)	897
Van91I	CCANNNNNTGG	1 cut(s)	1160
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	3 cut(s)	195, 565, 783
XbaI	TCTAGA	1 cut(s)	778
XceI	RCATGY	1 cut(s)	1354
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	4 cut(s)	200, 350, 779, 947
Zsp2I	ATGCAT	2 cut(s)	109, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.