Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003374

Physical Location & Seq

Genomic Coordinates Reverse (-)

49833000 .. 49838242

Gene Structure 5243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGCTCGGAAGGCTAATCAACAGAAGAATGGGGTTGATCGGCAGACGTCAAAGCAAAAGAAGAAGGGTTCGGAGTCAGGGGGTACACCAGCAGAAACGAAAGCGAATGGGAAAGCAAGTGAGGTGAAAGTTTTCCCTGGAGAAGAAATCTCAAATGGTGACCAGCCAAGCAGTCCTCTTTCAGCAGGTGTGAGTAAAACCAATCATGCTGGAGATGAGAATAAAAGCAAGCAAAAACCTGGGAAGGTTTTGAGGAAAGAGAATCAAGGGACGGATCCAATGCCGGGTCAAGGGCAGTCGACGTCTTCAGGAAGTGATTCTGGAAATTGCAATGGAAATAATGAAGCTCCAAGCATATTTTATGGGCCGTTACCCCATAGTGAAATACGTCGCAAACATGCAAAAAGAAAATCAGGTTACTCACTGAATCGGCATGTAAAAAATCTGATGGGGAAGATAGAGTCTTCAGATAGCTTATTGGTTAGAAATTTGAGGGCATCAACATTGTCCTTCTTGAAAGTGGCTAATGAATGGCTGCAGAGGCACAAACCAATGATTCTGACTGTAACAAGTAAAGTACAGAATGGTCGTGATTATGTCCAAACAAAGGTTGATCAGGCATATCCTATAGTTAAGAAGTGGCTTACGCAGCTTTGGAGTGTGCTGTTTATTATATCAATGCTTTGGTTCAATTCTATCTTAAGGGGTATCGATTCCTTCGTACGCATGGGGACAACATCCTTGTTTTCAGTGATATGGTTCAGCATTCTCTCTGTACTTTCTATGGTTGGGATGTTTAAATTCCTGATTGTCTTGGTCTCAGCAGCTTTAATTGGAGTTTTCATTGGGTTCATGCTTGCAATTTTATTGGTTGCTCTTTCTGGAGCTCTTTTCTTGTGGCTTTATGGAAGCTTTTGGACAACAGTACTTGTGATCTTCTTTGGAGGTTTGGCATTCACTCTGAGCCATGAGCGGGTTGCACTGTTAATTGCAACTGTGTATTCCATGTATTGTGCTTGGACGTATGTTGGATGGCTGGGTGTGCTCTTGGGGTTAAATTTATCTTTTATCTCAAGTGATTGTCTAATATATTTCTTAAAGAACAACGTAAATCAGAATACAAGACCTACCGGATCCCCTGAACAAACATCTGGAATGCACGATCAACAAGGATTCTTCAATGGTGAGCATGTGCATTCCTCATCCTCAGAAAATGGCCCATGGTTTTCTGCTGATCGTAGCCCTGGAGTGCCTTCAACCAGTGGGGCTGATTCTGAGTTAACTTCTGAAGATGAAATTGTTCGGCTGCTAAATTGTACTGACCACTATTCAGTGCTGGGATTCTCCCGCTATGAAGACGTAGATATTTCTTTACTGAAGCGAGAGTATAAGAAAAAGGCAATGTTGGTCCATCCTGATAAGAATATGGGAAATGAAAAGGCTGCTGAAGCTTTCAAGAAACTACAGAATGCATATGAGGTTTTACTTGATTCCTTGAAGCGAAAAGCATATGATGACGAATTAAGGAGCCAGGAACTGCTGAACATTTTCCGTAGGTTTAAAAGTGCTTCACAAAAGAATGGAGGAAACGGTTTCTTCCCCTCTGGATTTGGAAGCCCAGAGGCTGATGGTGAGGACCCATTTGGAGAGTCAAGGCGAATCGCCTGCAATAAGTGCAACAACTTTCATACCTGGTCACTCACCAGAAAATCAAAATCTAGAGCAAGATGGTGCCAGGATTGCAAAGATTTTCATCAAGTGAAAGATGGTGATGGATGGGTTGAACAATCTTCACAACCTTTCTTCTTTGGATTATTGCAGAAGGTAGATACTCCATCTGCATTTGTTTGTGCAGATAGCAAGATATATAATGCTAGCGAGTGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACACACAAACCTAGTTTTCATGTGAACACTAGTGTGACCTCTACGAAGCACAATTCTGGAAAGGGAACAAATTCAGGACAAAGAGGCGGGCGGATGCCAGCATCTGTTGAAGAGTGCATGACAGAGGAAGAATTTGTTGAGTGGCTACAAAATGCAATGCAAACAGGCATGTATGAGAATTTTAGTGCCGGCACCTCCACTGAGAGCCCTTCTGCCAAATCTGGAAATGGTACCAAGGCTAGTGGCAGTGCTAACAAGAGAAAGAAAAAGGGAAAGAAGCAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Jiv90

Protein Analysis

734

Amino Acids

81.37

Weight (kDa)

9.35

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	441 - 505	1.6e-17	DnaJ domain
Jiv90	PF14901	550 - 648	4.1e-36	Cleavage inducing molecular chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49580 AT5G49580 AT5G49580
fragaria_vesca	FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670
malus_domestica	MD13G1148800.v1.1 MD13G1148900.v1.1 MD16G1149100.v1.1
prunus_persica	Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1
pyrus_communis	pycom13g12810 pycom16g12740 pycom16g12770
rosa_chinensis	RchiOBHm_Chr4g0426071
rosa_laevigata	RLG00000007319
rosa_multiflora	Rmu_co8183128.1_g000001 Rmu_ssc0000281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368080
rosa_rugosa	Rorug04G0208800 Rorug04G0208900
rosa_samantha	Rh4AG265400 Rh4BG271500 Rh4CG284400 Rh4DG267700
rosa_wichuraiana	Rw4G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
AatII	GACGTC	2 cut(s)	50, 305
Acc36I	ACCTGC	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	2147
AccB1I	GGYRCC	3 cut(s)	1731, 2108, 2147
AccBSI	CCGCTC	1 cut(s)	973
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	4 cut(s)	973, 1348, 2004, 2008
AclWI	GGATC	4 cut(s)	269, 282, 1128, 1141
AcsI	RAATTY	6 cut(s)	487, 800, 1057, 1987, 2048, 2095
AcuI	CTGAAG	5 cut(s)	291, 450, 1308, 1397, 1467
AcyI	GRCGYC	2 cut(s)	47, 302
AfaI	GTAC	7 cut(s)	85, 579, 723, 777, 927, 1318, 2149
AfiI	CCNNNNNNNGG	4 cut(s)	284, 290, 607, 973
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	8 cut(s)	517, 691, 1180, 1257, 1456, 1498, 1784, 2027
AhlI	ACTAGT	1 cut(s)	1946
AjnI	CCWGG	6 cut(s)	136, 238, 1243, 1530, 1691, 1734
AleI	CACNNNNGTG	1 cut(s)	1949
AluBI	AGCT	7 cut(s)	347, 474, 652, 827, 887, 912, 1451
AluI	AGCT	7 cut(s)	347, 474, 652, 827, 887, 912, 1451
Alw21I	GWGCWC	2 cut(s)	889, 1047
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	4 cut(s)	269, 282, 1128, 1141
AlwNI	CAGNNNCTG	3 cut(s)	1537, 1625, 2021
AoxI	GGCC	2 cut(s)	365, 1216
ApeKI	GCWGC	5 cut(s)	535, 649, 824, 1306, 1442
ApoI	RAATTY	6 cut(s)	487, 800, 1057, 1987, 2048, 2095
Asp700I	GAANNNNTTC	5 cut(s)	131, 316, 1299, 1547, 1987
Asp718I	GGTACC	1 cut(s)	2147
AspS9I	GGNCC	4 cut(s)	365, 1217, 1408, 1636
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	6 cut(s)	136, 170, 1196, 1643, 1693, 1781
AsuNHI	GCTAGC	1 cut(s)	1874
AvaII	GGWCC	2 cut(s)	1408, 1636
BamHI	GGATCC	2 cut(s)	274, 1133
BanI	GGYRCC	3 cut(s)	1731, 2108, 2147
BanII	GRGCYC	2 cut(s)	889, 2126
BbsI	GAAGAC	3 cut(s)	297, 456, 1362
Bbv12I	GWGCWC	2 cut(s)	889, 1047
BbvI	GCAGC	5 cut(s)	522, 661, 836, 1293, 1429
BccI	CCATC	9 cut(s)	442, 1026, 1419, 1622, 1722, 1760, 1766, 1770, 1843
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	1647, 1681
BciT130I	CCWGG	6 cut(s)	138, 240, 1245, 1532, 1693, 1736
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	823
BcuI	ACTAGT	1 cut(s)	1946
BfaI	CTAG	5 cut(s)	1719, 1875, 1929, 1947, 2157
BfmI	CTRYAG	3 cut(s)	536, 627, 1463
BfrI	CTTAAG	1 cut(s)	700
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	536, 650, 825, 1307, 1443
BlsI	GCNGC	5 cut(s)	537, 651, 826, 1308, 1444
BmcAI	AGTACT	1 cut(s)	927
Bme1390I	CCNGG	7 cut(s)	138, 240, 285, 1245, 1532, 1693, 1736
Bme18I	GGWCC	2 cut(s)	1408, 1636
BmgT120I	GGNCC	4 cut(s)	365, 1217, 1408, 1636
BmiI	GGNNCC	7 cut(s)	276, 1135, 1529, 1638, 1733, 2110, 2149
BmrFI	CCNGG	7 cut(s)	138, 240, 285, 1245, 1532, 1693, 1736
BmsI	GCATC	3 cut(s)	506, 2001, 2027
BmtI	GCTAGC	1 cut(s)	1878
BpiI	GAAGAC	3 cut(s)	297, 456, 1362
BpmI	CTGGAG	4 cut(s)	159, 231, 903, 1266
BpuEI	CTTGAG	1 cut(s)	1057
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	1752
BsaHI	GRCGYC	2 cut(s)	47, 302
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	5 cut(s)	136, 239, 1220, 1243, 2151
BsaWI	WCCGGW	1 cut(s)	1130
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 290, 607, 973
Bse118I	RCCGGY	1 cut(s)	2105
Bse1I	ACTGG	1 cut(s)	1260
Bse3DI	GCAATG	4 cut(s)	337, 1407, 2079, 2204
Bse8I	GATNNNNATC	1 cut(s)	1752
BseBI	CCWGG	6 cut(s)	138, 240, 1245, 1532, 1693, 1736
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	5 cut(s)	136, 239, 1220, 1243, 2151
BseGI	GGATG	7 cut(s)	737, 798, 1037, 1202, 1411, 1781, 2016
BseJI	GATNNNNATC	1 cut(s)	1752
BseLI	CCNNNNNNNGG	4 cut(s)	284, 290, 607, 973
BseMI	GCAATG	4 cut(s)	337, 1407, 2079, 2204
BseMII	CTCAG	5 cut(s)	834, 953, 1221, 1266, 2109
BseNI	ACTGG	1 cut(s)	1260
BseXI	GCAGC	5 cut(s)	522, 661, 836, 1293, 1429
BseYI	CCCAGC	2 cut(s)	1036, 1336
BsgI	GTGCAG	1 cut(s)	1872
BshFI	GGCC	2 cut(s)	367, 1218
BshNI	GGYRCC	3 cut(s)	1731, 2108, 2147
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	2 cut(s)	889, 1047
BsiSI	CCGG	3 cut(s)	284, 1131, 2106
BsiWI	CGTACG	1 cut(s)	721
BslFI	GGGAC	2 cut(s)	283, 745
BslI	CCNNNNNNNGG	4 cut(s)	284, 290, 607, 973
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	2 cut(s)	283, 745
BsmI	GAATGC	5 cut(s)	765, 953, 1161, 1195, 1474
BsnI	GGCC	2 cut(s)	367, 1218
Bso31I	GGTCTC	1 cut(s)	823
Bsp1286I	GDGCHC	3 cut(s)	889, 1047, 2126
Bsp143I	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
Bsp19I	CCATGG	1 cut(s)	1220
BspACI	CCGC	4 cut(s)	973, 1348, 2004, 2008
BspANI	GGCC	2 cut(s)	367, 1218
BspCNI	CTCAG	5 cut(s)	833, 954, 1220, 1267, 2110
BspDI	ATCGAT	1 cut(s)	711
BspLI	GGNNCC	7 cut(s)	276, 1135, 1529, 1638, 1733, 2110, 2149
BspMAI	CTGCAG	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	176
BspOI	GCTAGC	1 cut(s)	1878
BspPI	GGATC	4 cut(s)	269, 282, 1128, 1141
BspT107I	GGYRCC	3 cut(s)	1731, 2108, 2147
BspTI	CTTAAG	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	823
BsrBI	CCGCTC	1 cut(s)	973
BsrDI	GCAATG	4 cut(s)	337, 1407, 2079, 2204
BsrFI	RCCGGY	1 cut(s)	2105
BsrI	ACTGG	1 cut(s)	1260
BssAI	RCCGGY	1 cut(s)	2105
BssECI	CCNNGG	5 cut(s)	136, 239, 1220, 1243, 2151
BssMI	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
BssNI	GRCGYC	2 cut(s)	47, 302
BssT1I	CCWWGG	2 cut(s)	1220, 2151
Bst2UI	CCWGG	6 cut(s)	138, 240, 1245, 1532, 1693, 1736
Bst4CI	ACNGT	5 cut(s)	565, 925, 984, 997, 1592
Bst6I	CTCTTC	1 cut(s)	2022
BstACI	GRCGYC	2 cut(s)	47, 302
BstAFI	CTTAAG	1 cut(s)	700
BstAPI	GCANNNNNTGC	1 cut(s)	1674
BstC8I	GCNNGC	7 cut(s)	230, 858, 1666, 1876, 2006, 2016, 2107
BstDEI	CTNAG	5 cut(s)	820, 962, 1207, 1275, 2118
BstDSI	CCRYGG	1 cut(s)	1220
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	7 cut(s)	737, 798, 1037, 1202, 1411, 1781, 2016
BstKTI	GATC	7 cut(s)	40, 277, 616, 936, 1136, 1165, 1237
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 541, 649, 1042, 1448, 1674, 1740
BstNI	CCWGG	6 cut(s)	138, 240, 1245, 1532, 1693, 1736
BstNSI	RCATGY	4 cut(s)	401, 437, 1193, 2089
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	7 cut(s)	136, 238, 283, 1243, 1530, 1691, 1734
BstSFI	CTRYAG	3 cut(s)	536, 627, 1463
BstV1I	GCAGC	5 cut(s)	522, 661, 836, 1293, 1429
BstV2I	GAAGAC	3 cut(s)	297, 456, 1362
BstX2I	RGATCY	2 cut(s)	274, 1133
BstYI	RGATCY	2 cut(s)	274, 1133
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	367, 1218
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	1220
BtsCI	GGATG	7 cut(s)	737, 798, 1037, 1202, 1411, 1781, 2016
BtsI	GCAGTG	1 cut(s)	2170
BtsIMutI	CAGTG	7 cut(s)	422, 756, 980, 1267, 1338, 2115, 2170
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	7 cut(s)	230, 858, 1666, 1876, 2006, 2016, 2107
CaiI	CAGNNNCTG	3 cut(s)	1537, 1625, 2021
Cfr10I	RCCGGY	1 cut(s)	2105
Cfr13I	GGNCC	4 cut(s)	365, 1217, 1408, 1636
ClaI	ATCGAT	1 cut(s)	711
CsiI	ACCWGGT	1 cut(s)	1691
Csp6I	GTAC	7 cut(s)	84, 578, 722, 776, 926, 1317, 2148
CspCI	CAANNNNNGTGG	2 cut(s)	2140, 2175
CviQI	GTAC	7 cut(s)	84, 578, 722, 776, 926, 1317, 2148
DdeI	CTNAG	5 cut(s)	820, 962, 1207, 1275, 2118
DpnI	GATC	7 cut(s)	39, 276, 615, 935, 1135, 1164, 1236
DpnII	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
DraI	TTTAAA	2 cut(s)	799, 1561
Eam1104I	CTCTTC	1 cut(s)	2022
EarI	CTCTTC	1 cut(s)	2022
EciI	GGCGGA	1 cut(s)	2023
Ecl136II	GAGCTC	1 cut(s)	887
Eco130I	CCWWGG	2 cut(s)	1220, 2151
Eco24I	GRGCYC	2 cut(s)	889, 2126
Eco31I	GGTCTC	1 cut(s)	823
Eco47I	GGWCC	2 cut(s)	1408, 1636
Eco53kI	GAGCTC	1 cut(s)	887
Eco57I	CTGAAG	5 cut(s)	291, 450, 1308, 1397, 1467
Eco91I	GGTNACC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	887
EcoO109I	RGGNCCY	1 cut(s)	1636
EcoO65I	GGTNACC	1 cut(s)	158
EcoRII	CCWGG	6 cut(s)	136, 238, 1243, 1530, 1691, 1734
EcoT14I	CCWWGG	2 cut(s)	1220, 2151
EcoT22I	ATGCAT	1 cut(s)	1474
EcoT38I	GRGCYC	2 cut(s)	889, 2126
ErhI	CCWWGG	2 cut(s)	1220, 2151
FaqI	GGGAC	2 cut(s)	283, 745
FauI	CCCGC	3 cut(s)	966, 1355, 1997
FauNDI	CATATG	2 cut(s)	1474, 1510
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	5 cut(s)	536, 650, 825, 1307, 1443
FokI	GGATG	7 cut(s)	724, 805, 1044, 1189, 1398, 1788, 2023
FriOI	GRGCYC	2 cut(s)	889, 2126
Fsp4HI	GCNGC	5 cut(s)	536, 650, 825, 1307, 1443
FspBI	CTAG	5 cut(s)	1719, 1875, 1929, 1947, 2157
GluI	GCNGC	5 cut(s)	536, 650, 825, 1307, 1443
GsaI	CCCAGC	2 cut(s)	1040, 1340
GsuI	CTGGAG	4 cut(s)	159, 231, 903, 1266
HaeIII	GGCC	2 cut(s)	367, 1218
HapII	CCGG	3 cut(s)	284, 1131, 2106
Hin1I	GRCGYC	2 cut(s)	47, 302
HincII	GTYRAC	2 cut(s)	300, 1281
HindII	GTYRAC	2 cut(s)	300, 1281
HindIII	AAGCTT	2 cut(s)	910, 1449
HpaI	GTTAAC	1 cut(s)	1281
HpaII	CCGG	3 cut(s)	284, 1131, 2106
HphI	GGTGA	6 cut(s)	136, 170, 1196, 1643, 1693, 1781
Hpy166II	GTNNAC	4 cut(s)	86, 300, 1281, 1942
Hpy8I	GTNNAC	4 cut(s)	86, 300, 1281, 1942
Hpy99I	CGWCG	2 cut(s)	304, 393
HpyAV	CCTTC	8 cut(s)	4, 58, 238, 520, 727, 1263, 1816, 2136
HpyCH4III	ACNGT	5 cut(s)	565, 925, 984, 997, 1592
HpyCH4IV	ACGT	6 cut(s)	47, 302, 388, 1022, 1107, 1359
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 541, 649, 1042, 1448, 1674, 1740
HpyF3I	CTNAG	5 cut(s)	820, 962, 1207, 1275, 2118
HpySE526I	ACGT	6 cut(s)	47, 302, 388, 1022, 1107, 1359
Hsp92I	GRCGYC	2 cut(s)	47, 302
KpnI	GGTACC	1 cut(s)	2151
KroI	GCCGGC	1 cut(s)	2105
KroNI	GCCGGC	1 cut(s)	2107
Ksp22I	TGATCA	1 cut(s)	613
KspAI	GTTAAC	1 cut(s)	1281
Kzo9I	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
LmnI	GCTCC	3 cut(s)	352, 884, 1527
Lsp1109I	GCAGC	5 cut(s)	522, 661, 836, 1293, 1429
LweI	GCATC	3 cut(s)	506, 2001, 2027
MabI	ACCWGGT	1 cut(s)	1691
MaeI	CTAG	5 cut(s)	1719, 1875, 1929, 1947, 2157
MaeII	ACGT	6 cut(s)	47, 302, 388, 1022, 1107, 1359
MaeIII	GTNAC	6 cut(s)	158, 369, 416, 565, 1695, 1951
MalI	GATC	7 cut(s)	39, 276, 615, 935, 1135, 1164, 1236
MbiI	CCGCTC	1 cut(s)	973
MboI	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
MflI	RGATCY	2 cut(s)	274, 1133
MhlI	GDGCHC	3 cut(s)	889, 1047, 2126
MlyI	GAGTC	3 cut(s)	83, 470, 1658
MmeI	TCCRAC	1 cut(s)	1009
Mph1103I	ATGCAT	1 cut(s)	1474
MroNI	GCCGGC	1 cut(s)	2105
MroXI	GAANNNNTTC	5 cut(s)	131, 316, 1299, 1547, 1987
MslI	CAYNNNNRTG	1 cut(s)	1949
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	3 cut(s)	284, 1131, 2106
MspR9I	CCNGG	7 cut(s)	138, 240, 285, 1245, 1532, 1693, 1736
Mva1269I	GAATGC	5 cut(s)	765, 953, 1161, 1195, 1474
MvaI	CCWGG	6 cut(s)	138, 240, 1245, 1532, 1693, 1736
MwoI	GCNNNNNNNGC	7 cut(s)	11, 541, 649, 1042, 1448, 1674, 1740
NaeI	GCCGGC	1 cut(s)	2107
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	1220
NdeI	CATATG	2 cut(s)	1474, 1510
NdeII	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
NgoMIV	GCCGGC	1 cut(s)	2105
NheI	GCTAGC	1 cut(s)	1874
NlaIV	GGNNCC	7 cut(s)	276, 1135, 1529, 1638, 1733, 2110, 2149
NmuCI	GTSAC	3 cut(s)	158, 1695, 1951
NsiI	ATGCAT	1 cut(s)	1474
NspI	RCATGY	4 cut(s)	401, 437, 1193, 2089
OliI	CACNNNNGTG	1 cut(s)	1949
PaqCI	CACCTGC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PctI	GAATGC	5 cut(s)	765, 953, 1161, 1195, 1474
PdiI	GCCGGC	1 cut(s)	2107
PdmI	GAANNNNTTC	5 cut(s)	131, 316, 1299, 1547, 1987
Pfl23II	CGTACG	1 cut(s)	721
PkrI	GCNGC	5 cut(s)	537, 651, 826, 1308, 1444
PleI	GAGTC	3 cut(s)	82, 469, 1657
PpsI	GAGTC	3 cut(s)	82, 469, 1657
PpuMI	RGGWCCY	1 cut(s)	1636
Psp124BI	GAGCTC	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	1636
Psp6I	CCWGG	6 cut(s)	136, 238, 1243, 1530, 1691, 1734
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	2 cut(s)	1036, 1336
PspGI	CCWGG	6 cut(s)	136, 238, 1243, 1530, 1691, 1734
PspLI	CGTACG	1 cut(s)	721
PspN4I	GGNNCC	7 cut(s)	276, 1135, 1529, 1638, 1733, 2110, 2149
PspPI	GGNCC	4 cut(s)	365, 1217, 1408, 1636
PspPPI	RGGWCCY	1 cut(s)	1636
PstI	CTGCAG	1 cut(s)	540
PstNI	CAGNNNCTG	3 cut(s)	1537, 1625, 2021
PsuI	RGATCY	2 cut(s)	274, 1133
RsaI	GTAC	7 cut(s)	85, 579, 723, 777, 927, 1318, 2149
RsaNI	GTAC	7 cut(s)	84, 578, 722, 776, 926, 1317, 2148
RseI	CAYNNNNRTG	1 cut(s)	1949
SacI	GAGCTC	1 cut(s)	889
SalI	GTCGAC	1 cut(s)	298
SatI	GCNGC	5 cut(s)	536, 650, 825, 1307, 1443
Sau3AI	GATC	7 cut(s)	37, 274, 613, 933, 1133, 1162, 1234
Sau96I	GGNCC	4 cut(s)	365, 1217, 1408, 1636
ScaI	AGTACT	1 cut(s)	927
SchI	GAGTC	3 cut(s)	83, 470, 1658
ScrFI	CCNGG	7 cut(s)	138, 240, 285, 1245, 1532, 1693, 1736
SduI	GDGCHC	3 cut(s)	889, 1047, 2126
SexAI	ACCWGGT	1 cut(s)	1691
SfaNI	GCATC	3 cut(s)	506, 2001, 2027
SfcI	CTRYAG	3 cut(s)	536, 627, 1463
SinI	GGWCC	2 cut(s)	1408, 1636
SmiMI	CAYNNNNRTG	1 cut(s)	1949
SmlI	CTYRAG	2 cut(s)	700, 1072
SmoI	CTYRAG	2 cut(s)	700, 1072
SpeI	ACTAGT	1 cut(s)	1946
SsiI	CCGC	4 cut(s)	973, 1348, 2004, 2008
SspMI	CTAG	5 cut(s)	1719, 1875, 1929, 1947, 2157
SstI	GAGCTC	1 cut(s)	889
StyD4I	CCNGG	7 cut(s)	136, 238, 283, 1243, 1530, 1691, 1734
StyI	CCWWGG	2 cut(s)	1220, 2151
TaaI	ACNGT	5 cut(s)	565, 925, 984, 997, 1592
TaiI	ACGT	6 cut(s)	50, 305, 391, 1025, 1110, 1362
TaqI	TCGA	2 cut(s)	299, 711
TatI	WGTACW	4 cut(s)	577, 775, 925, 1316
TscAI	CASTG	7 cut(s)	429, 756, 987, 1267, 1338, 2122, 2170
TseFI	GTSAC	3 cut(s)	158, 1695, 1951
TseI	GCWGC	5 cut(s)	535, 649, 824, 1306, 1442
Tsp45I	GTSAC	3 cut(s)	158, 1695, 1951
TspGWI	ACGGA	2 cut(s)	287, 1541
TspRI	CASTG	7 cut(s)	429, 756, 987, 1267, 1338, 2122, 2170
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	2 cut(s)	1408, 1636
XapI	RAATTY	6 cut(s)	487, 800, 1057, 1987, 2048, 2095
XbaI	TCTAGA	1 cut(s)	1718
XceI	RCATGY	4 cut(s)	401, 437, 1193, 2089
XmiI	GTMKAC	1 cut(s)	299
XmnI	GAANNNNTTC	5 cut(s)	131, 316, 1299, 1547, 1987
XspI	CTAG	5 cut(s)	1719, 1875, 1929, 1947, 2157
ZraI	GACGTC	2 cut(s)	48, 303
ZrmI	AGTACT	1 cut(s)	927
Zsp2I	ATGCAT	1 cut(s)	1474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.