Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003374

Physical Location & Seq

Genomic Coordinates Forward (+)

11707875 .. 11710366

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1148900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTGAATGATGACTTTTATCTTTCCAGAGATTCGGTTACACATATAGAAGTACTGCTCCTGGATAACATGCTATACTGCTCTGCAATGTTGGTCCATCCTGATAAAAATATGGGAAATGAAAAAGCTGCTGAAGCTTTCAAGAAACTTCAAAATGCATATGAGATTTTACTTGATTCCCTGAAGCGAAAAACATATGACGACGAATTAAGGAGAGAGGAACTGCTGGACATTTTCTGTAGATTTCAAAGTGCTTCACAAAAGAATGGAGGGCACAGTGTCTTTCCCCGTGGCTTTCCACACCCTGAAGCTGATGGCGAGGACCCATTTGGGGATTCAAGGAGAATCGTCTGCAATAAGTGTGGCAATTTGCATGTTTGGGTGCTCACCAGGAAATCAAAATCCCAATCACGATGGTGCCAGGATTGCAAAGATTTTCATCAAGCAAAAGATGGTGATGGGTGGGTTGAACAATCTTCCCAACCCTTCTTCTTTGGAATGTTGCAGAAGTTAGATGCTCCATCCGCATTTATTTGTGCCGATAGTAAGATATACAATGCTACCGAGTGGTATATTTGCCAGGGAATGAGATGTCCAGCCAACACTCACAAGCCAAGTTTTCATGTGAACACTAGTGTGACCTCTAATAAGCATAATACCGGAAAGGGAGCAAGTTCAGGGCAAAGAGGAGGTCGTATGCCAACATCGAATATGGAAGAGAACATGACAGAGGAAGAATTCTTCGAGTGGTTACAGAATGCCGTGCAAACTGGCATGTTTGAAAATTCTGGTGCCGGCACCTCCACTGAGAGCCCGTCTGCCAAATCTGGACCTGGTACCAAGAGCGGTGGCAGCACCAGTGGCAGTGCTAACAAGAGAAAGAAAAAGGGAAAGAAATGGCCTGAGGAAAGTTTGACATCATTAATCATAAGTATAGAATCTAATCACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Jiv90

Protein Analysis

318

Amino Acids

35.49

Weight (kDa)

6.83

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	29 - 67	6.4e-12	DnaJ domain
Jiv90	PF14901	113 - 210	4.9e-37	Cleavage inducing molecular chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49580 AT5G49580 AT5G49580
fragaria_vesca	FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670 FvH4_4g20670
malus_domestica	MD13G1148800.v1.1 MD13G1148900.v1.1 MD16G1149100.v1.1
prunus_persica	Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1 Prupe.1G112900_v2.0.a1
pyrus_communis	pycom13g12810 pycom16g12740 pycom16g12770
rosa_chinensis	RchiOBHm_Chr4g0426071
rosa_laevigata	RLG00000007319
rosa_multiflora	Rmu_co8183128.1_g000001 Rmu_ssc0000281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00368080
rosa_rugosa	Rorug04G0208800 Rorug04G0208900
rosa_samantha	Rh4AG265400 Rh4BG271500 Rh4CG284400 Rh4DG267700
rosa_wichuraiana	Rw4G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	4 cut(s)	417, 791, 797, 836
AccBSI	CCGCTC	1 cut(s)	846
AciI	CCGC	2 cut(s)	525, 846
AcsI	RAATTY	2 cut(s)	737, 784
AcuI	CTGAAG	3 cut(s)	153, 203, 327
AfaI	GTAC	2 cut(s)	54, 838
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	6 cut(s)	142, 152, 248, 339, 470, 782
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	5 cut(s)	60, 389, 420, 579, 832
AleI	CACNNNNGTG	2 cut(s)	415, 635
AluBI	AGCT	3 cut(s)	128, 137, 311
AluI	AGCT	3 cut(s)	128, 137, 311
Alw21I	GWGCWC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	2 cut(s)	128, 852
ApoI	RAATTY	2 cut(s)	737, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	676, 708
AseI	ATTAAT	1 cut(s)	923
Asp718I	GGTACC	1 cut(s)	836
AspS9I	GGNCC	3 cut(s)	94, 322, 830
AsuHPI	GGTGA	4 cut(s)	16, 379, 467, 938
AvaII	GGWCC	3 cut(s)	94, 322, 830
AxyI	CCTNAGG	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	4 cut(s)	417, 791, 797, 836
BanII	GRGCYC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	115, 864
BccI	CCATC	6 cut(s)	105, 308, 408, 446, 452, 529
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	5 cut(s)	62, 391, 422, 581, 834
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	129, 853
BlsI	GCNGC	2 cut(s)	130, 854
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	5 cut(s)	62, 391, 422, 581, 834
Bme18I	GGWCC	3 cut(s)	94, 322, 830
BmgT120I	GGNCC	3 cut(s)	94, 322, 830
BmiI	GGNNCC	5 cut(s)	324, 419, 793, 799, 838
BmrFI	CCNGG	5 cut(s)	62, 391, 422, 581, 834
BmsI	GCATC	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	289, 580
BsaWI	WCCGGW	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	2 cut(s)	775, 858
Bse21I	CCTNAGG	1 cut(s)	903
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	5 cut(s)	62, 391, 422, 581, 834
BseDI	CCNNGG	2 cut(s)	289, 580
BseGI	GGATG	2 cut(s)	97, 521
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	798, 894
BseNI	ACTGG	2 cut(s)	775, 858
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	115, 864
BshFI	GGCC	1 cut(s)	901
BshNI	GGYRCC	4 cut(s)	417, 791, 797, 836
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	660, 795
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	1 cut(s)	901
Bsp1286I	GDGCHC	3 cut(s)	276, 387, 815
BspACI	CCGC	2 cut(s)	525, 846
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	2 cut(s)	799, 895
BspLI	GGNNCC	5 cut(s)	324, 419, 793, 799, 838
BspT107I	GGYRCC	4 cut(s)	417, 791, 797, 836
BsrBI	CCGCTC	1 cut(s)	846
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	775, 858
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	2 cut(s)	289, 580
Bst2UI	CCWGG	5 cut(s)	62, 391, 422, 581, 834
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	2 cut(s)	807, 903
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	97, 521
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 426, 524, 852, 861
BstNI	CCWGG	5 cut(s)	62, 391, 422, 581, 834
BstNSI	RCATGY	3 cut(s)	73, 377, 778
BstSCI	CCNGG	5 cut(s)	60, 389, 420, 579, 832
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	115, 864
Bsu36I	CCTNAGG	1 cut(s)	903
BsuRI	GGCC	1 cut(s)	901
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	97, 521
BtsI	GCAGTG	1 cut(s)	871
BtsIMutI	CAGTG	4 cut(s)	283, 804, 865, 871
Cac8I	GCNNGC	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	3 cut(s)	94, 322, 830
CsiI	ACCWGGT	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	53, 837
CspCI	CAANNNNNGTGG	4 cut(s)	343, 378, 829, 864
CviAII	CATG	5 cut(s)	70, 374, 623, 724, 775
CviJI	RGCY	8 cut(s)	128, 137, 294, 311, 599, 613, 813, 901
CviKI_1	RGCY	8 cut(s)	128, 137, 294, 311, 599, 613, 813, 901
CviQI	GTAC	2 cut(s)	53, 837
DdeI	CTNAG	2 cut(s)	807, 903
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco24I	GRGCYC	1 cut(s)	815
Eco47I	GGWCC	3 cut(s)	94, 322, 830
Eco57I	CTGAAG	3 cut(s)	153, 203, 327
Eco81I	CCTNAGG	1 cut(s)	903
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	737
EcoRII	CCWGG	5 cut(s)	60, 389, 420, 579, 832
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	815
FaeI	CATG	5 cut(s)	73, 377, 626, 727, 778
FatI	CATG	5 cut(s)	69, 373, 622, 723, 774
FauNDI	CATATG	2 cut(s)	160, 196
Fnu4HI	GCNGC	2 cut(s)	129, 853
FokI	GGATG	2 cut(s)	84, 508
FriOI	GRGCYC	1 cut(s)	815
Fsp4HI	GCNGC	2 cut(s)	129, 853
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	2 cut(s)	129, 853
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	2 cut(s)	660, 795
Hin1II	CATG	5 cut(s)	73, 377, 626, 727, 778
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	5 cut(s)	32, 176, 335, 345, 938
HpaII	CCGG	2 cut(s)	660, 795
HphI	GGTGA	4 cut(s)	16, 379, 467, 938
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188III	TCNNGA	5 cut(s)	27, 101, 142, 411, 828
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	7 cut(s)	86, 158, 354, 373, 429, 505, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 426, 524, 852, 861
HpyF3I	CTNAG	2 cut(s)	807, 903
Hsp92II	CATG	5 cut(s)	73, 377, 626, 727, 778
KpnI	GGTACC	1 cut(s)	840
KroI	GCCGGC	1 cut(s)	794
KroNI	GCCGGC	1 cut(s)	796
LmnI	GCTCC	3 cut(s)	63, 523, 668
Lsp1109I	GCAGC	2 cut(s)	115, 864
LweI	GCATC	1 cut(s)	505
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	1 cut(s)	633
MaeIII	GTNAC	3 cut(s)	37, 637, 750
MbiI	CCGCTC	1 cut(s)	846
MboII	GAAGA	5 cut(s)	468, 481, 728, 733, 746
MhlI	GDGCHC	3 cut(s)	276, 387, 815
MluCI	AATT	4 cut(s)	206, 367, 737, 784
MnlI	CCTC	9 cut(s)	211, 263, 313, 652, 680, 683, 724, 811, 898
Mph1103I	ATGCAT	1 cut(s)	160
MroNI	GCCGGC	1 cut(s)	794
MseI	TTAA	2 cut(s)	209, 923
MslI	CAYNNNNRTG	2 cut(s)	415, 635
MspI	CCGG	2 cut(s)	660, 795
MspR9I	CCNGG	5 cut(s)	62, 391, 422, 581, 834
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	5 cut(s)	62, 391, 422, 581, 834
MwoI	GCNNNNNNNGC	5 cut(s)	134, 426, 524, 852, 861
NaeI	GCCGGC	1 cut(s)	796
NdeI	CATATG	2 cut(s)	160, 196
NgoMIV	GCCGGC	1 cut(s)	794
NlaIII	CATG	5 cut(s)	73, 377, 626, 727, 778
NlaIV	GGNNCC	5 cut(s)	324, 419, 793, 799, 838
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	3 cut(s)	73, 377, 778
OliI	CACNNNNGTG	2 cut(s)	415, 635
PctI	GAATGC	1 cut(s)	763
PdiI	GCCGGC	1 cut(s)	796
PfeI	GAWTC	5 cut(s)	32, 176, 335, 345, 938
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	130, 854
PpuMI	RGGWCCY	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	923
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	5 cut(s)	60, 389, 420, 579, 832
PspGI	CCWGG	5 cut(s)	60, 389, 420, 579, 832
PspN4I	GGNNCC	5 cut(s)	324, 419, 793, 799, 838
PspPI	GGNCC	3 cut(s)	94, 322, 830
PspPPI	RGGWCCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	54, 838
RsaNI	GTAC	2 cut(s)	53, 837
RseI	CAYNNNNRTG	2 cut(s)	415, 635
SaqAI	TTAA	2 cut(s)	209, 923
SatI	GCNGC	2 cut(s)	129, 853
Sau96I	GGNCC	3 cut(s)	94, 322, 830
ScaI	AGTACT	1 cut(s)	54
ScrFI	CCNGG	5 cut(s)	62, 391, 422, 581, 834
SduI	GDGCHC	3 cut(s)	276, 387, 815
SetI	ASST	7 cut(s)	130, 139, 313, 644, 694, 803, 835
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	3 cut(s)	94, 322, 830
SmiMI	CAYNNNNRTG	2 cut(s)	415, 635
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	4 cut(s)	206, 367, 737, 784
SsiI	CCGC	2 cut(s)	525, 846
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	5 cut(s)	60, 389, 420, 579, 832
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	707, 744
TasI	AATT	4 cut(s)	206, 367, 737, 784
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	5 cut(s)	32, 176, 335, 345, 938
Tru1I	TTAA	2 cut(s)	209, 923
Tru9I	TTAA	2 cut(s)	209, 923
TscAI	CASTG	4 cut(s)	283, 811, 865, 871
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	128, 852
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	135, 428, 611
TspRI	CASTG	4 cut(s)	283, 811, 865, 871
VpaK11BI	GGWCC	3 cut(s)	94, 322, 830
VspI	ATTAAT	1 cut(s)	923
XapI	RAATTY	2 cut(s)	737, 784
XceI	RCATGY	3 cut(s)	73, 377, 778
XspI	CTAG	1 cut(s)	633
ZrmI	AGTACT	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.