Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Reverse (-)

13845393 .. 13847669

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1170400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCCCCTGTACCCATTTATCCCATCAAGGTTGGTCACATTGACGATGTCCAAGAACTCAGAAAATCCAAGCCTTCTATTATTCCTGAGAGATTTGTGAGGGACATGACTGAGAGGCCAGCACTTGCCACTCCCATGCCATTCTCCACTGACATTCCCACCATCAATTTCTCAAAGCTTGCAAAAGGGACCAAAGATGAAATCAAAAGTGAGATTTCCCAGCTTGTAAATGCCTGTGAGAACTGGGGATTTTTCCAGGTGGTTAATCATGGGATTGATCTGAGTATACTCGAGAGCATAGAGAAGGTGGCCAAGGAATTTTTCATGCTGCCTTTGGAGGAGAAGAAGAAGTATGCGATGGCTCCTGGGACAGTTCAGGGATATGGCCAGGCTTTTGTTTTATCAGAAGACCAGAAATTGGACTGGTGCAACATGTTTGCTCTTGGGGTTGTACCAAACTTTATAAGAAACCCCATGTTATGGCCAACAAACCCAGAAAATTTCAGTGAAAGTGTAGAGGTCTATTCAAAGGAAGTGAGGAAGCTGTGCCAGAATCTGCTGAAATACATAGCCATGAGCCTTGGATTGAAAGGTGATGTGTTTGAGAAGATGTTTGGGGAGGCTGTGCAAGCCCTAAGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTAGTTTTGGGACTAAGTCCACACTCAGATGGGAGTGCCCTCACAGTTTTGCAGCAAGGGAAGGGCAACTCAGTGGGGCTTCAAATCCTCAAAGATGACAGATGGGTCCCTGTTAAGCCCATTCCCAATGCACTTGTGATCAACATTGGAGACACCATAGAAGTTCTTACAAATGGGAAATACAAGAGTGTGGAGCATAGAGCAGTGACACACAAGGAGGAAGACAGGCTTTCAATTGTGACATTTTATGCTCCTAGCTATGAGATAGAGGTTGGACCAATGGCAGAATTGGTGGATAAAAACAACCCATGCAAGTATAGAAGATACAATCATGGAGAATACAGTAAACACTATGTAACAAACAAGTTGCAAGGCAAGAAAACCTTGGAGTTTGCTAAGATTCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.72

Weight (kDa)

7.61

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 164	7.7e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	210 - 309	1.6e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AasI	GACNNNNNNGTC	1 cut(s)	776
AccB7I	CCANNNNNTGG	2 cut(s)	418, 480
AccI	GTMKAC	1 cut(s)	286
AcoI	YGGCCR	3 cut(s)	309, 385, 482
AcsI	RAATTY	2 cut(s)	317, 499
AfaI	GTAC	2 cut(s)	12, 453
AfiI	CCNNNNNNNGG	3 cut(s)	418, 480, 679
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	6 cut(s)	528, 589, 663, 755, 906, 1076
AjnI	CCWGG	3 cut(s)	255, 364, 387
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	4 cut(s)	178, 223, 544, 930
AluI	AGCT	4 cut(s)	178, 223, 544, 930
Alw26I	GTCTC	1 cut(s)	816
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	5 cut(s)	3, 116, 309, 385, 482
ApeKI	GCWGC	2 cut(s)	328, 724
ApoI	RAATTY	2 cut(s)	317, 499
AspS9I	GGNCC	4 cut(s)	4, 189, 778, 947
AsuHPI	GGTGA	1 cut(s)	605
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	189, 778, 947
AxyI	CCTNAGG	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	712
BalI	TGGCCA	3 cut(s)	311, 387, 484
BbsI	GAAGAC	2 cut(s)	414, 900
BbvI	GCAGC	2 cut(s)	315, 736
BccI	CCATC	5 cut(s)	32, 170, 352, 695, 768
BciT130I	CCWGG	3 cut(s)	257, 366, 389
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	816
BfaI	CTAG	2 cut(s)	674, 927
BisI	GCNGC	2 cut(s)	329, 725
BlsI	GCNGC	2 cut(s)	330, 726
Bme1390I	CCNGG	3 cut(s)	257, 366, 389
Bme18I	GGWCC	3 cut(s)	189, 778, 947
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	4 cut(s)	4, 189, 778, 947
BmiI	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
BmrFI	CCNGG	3 cut(s)	257, 366, 389
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	414, 900
BsaJI	CCNNGG	4 cut(s)	312, 365, 580, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 480, 679
Bse1I	ACTGG	2 cut(s)	248, 428
Bse21I	CCTNAGG	1 cut(s)	635
BseBI	CCWGG	3 cut(s)	257, 366, 389
BseDI	CCNNGG	4 cut(s)	312, 365, 580, 1056
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	418, 480, 679
BseMII	CTCAG	6 cut(s)	73, 78, 102, 272, 711, 756
BseNI	ACTGG	2 cut(s)	248, 428
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	315, 736
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	5 cut(s)	5, 118, 311, 387, 484
BsiHKCI	CYCGRG	1 cut(s)	290
BslFI	GGGAC	5 cut(s)	116, 202, 382, 696, 764
BslI	CCNNNNNNNGG	3 cut(s)	418, 480, 679
BsmAI	GTCTC	1 cut(s)	816
BsmFI	GGGAC	5 cut(s)	116, 202, 382, 696, 764
BsnI	GGCC	5 cut(s)	5, 118, 311, 387, 484
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	2 cut(s)	277, 810
BspANI	GGCC	5 cut(s)	5, 118, 311, 387, 484
BspCNI	CTCAG	6 cut(s)	72, 79, 103, 273, 710, 755
BspLI	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
BsrI	ACTGG	2 cut(s)	248, 428
BssECI	CCNNGG	4 cut(s)	312, 365, 580, 1056
BssMI	GATC	2 cut(s)	277, 810
BssNAI	GTATAC	1 cut(s)	287
BssT1I	CCWWGG	3 cut(s)	312, 580, 1056
Bst1107I	GTATAC	1 cut(s)	287
Bst2UI	CCWGG	3 cut(s)	257, 366, 389
Bst4CI	ACNGT	3 cut(s)	373, 718, 1016
BstC8I	GCNNGC	3 cut(s)	120, 180, 630
BstDEI	CTNAG	9 cut(s)	59, 87, 111, 281, 635, 686, 697, 742, 1068
BstF5I	GGATG	1 cut(s)	645
BstKTI	GATC	2 cut(s)	280, 813
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	2 cut(s)	277, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	3 cut(s)	257, 366, 389
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	255, 364, 387
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	315, 736
BstV2I	GAAGAC	2 cut(s)	414, 900
BstZ17I	GTATAC	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	635
BsuRI	GGCC	5 cut(s)	5, 118, 311, 387, 484
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	4 cut(s)	147, 511, 750, 882
Cac8I	GCNNGC	3 cut(s)	120, 180, 630
CaiI	CAGNNNCTG	1 cut(s)	556
Cfr13I	GGNCC	4 cut(s)	4, 189, 778, 947
Csp6I	GTAC	2 cut(s)	11, 452
CviQI	GTAC	2 cut(s)	11, 452
DdeI	CTNAG	9 cut(s)	59, 87, 111, 281, 635, 686, 697, 742, 1068
DpnI	GATC	2 cut(s)	279, 812
DpnII	GATC	2 cut(s)	277, 810
DrdI	GACNNNNNNGTC	1 cut(s)	776
DseDI	GACNNNNNNGTC	1 cut(s)	776
EaeI	YGGCCR	3 cut(s)	309, 385, 482
Eco130I	CCWWGG	3 cut(s)	312, 580, 1056
Eco47I	GGWCC	3 cut(s)	189, 778, 947
Eco81I	CCTNAGG	1 cut(s)	635
Eco88I	CYCGRG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	3 cut(s)	255, 364, 387
EcoT14I	CCWWGG	3 cut(s)	312, 580, 1056
ErhI	CCWWGG	3 cut(s)	312, 580, 1056
FalI	AAGNNNNNCTT	4 cut(s)	885, 917, 1040, 1072
FaqI	GGGAC	5 cut(s)	116, 202, 382, 696, 764
FbaI	TGATCA	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	329, 725
FokI	GGATG	1 cut(s)	652
Fsp4HI	GCNGC	2 cut(s)	329, 725
FspBI	CTAG	2 cut(s)	674, 927
GluI	GCNGC	2 cut(s)	329, 725
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	5 cut(s)	5, 118, 311, 387, 484
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	553, 1072
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	3 cut(s)	287, 692, 1019
Hpy188I	TCNGA	4 cut(s)	62, 282, 406, 700
Hpy188III	TCNNGA	3 cut(s)	86, 292, 663
Hpy8I	GTNNAC	3 cut(s)	287, 692, 1019
HpyAV	CCTTC	3 cut(s)	84, 298, 727
HpyCH4III	ACNGT	3 cut(s)	373, 718, 1016
HpyCH4V	TGCA	7 cut(s)	182, 429, 628, 724, 803, 984, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	9 cut(s)	59, 87, 111, 281, 635, 686, 697, 742, 1068
KflI	GGGWCCC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	2 cut(s)	277, 810
LmnI	GCTCC	3 cut(s)	367, 865, 928
Lsp1109I	GCAGC	2 cut(s)	315, 736
MaeI	CTAG	2 cut(s)	674, 927
MaeIII	GTNAC	4 cut(s)	35, 877, 910, 1027
MalI	GATC	2 cut(s)	279, 812
MboI	GATC	2 cut(s)	277, 810
MboII	GAAGA	6 cut(s)	355, 358, 419, 619, 905, 1005
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	712
MlsI	TGGCCA	3 cut(s)	311, 387, 484
MluCI	AATT	6 cut(s)	166, 317, 416, 499, 906, 959
MluNI	TGGCCA	3 cut(s)	311, 387, 484
MmeI	TCCRAC	1 cut(s)	925
Mox20I	TGGCCA	3 cut(s)	311, 387, 484
MscI	TGGCCA	3 cut(s)	311, 387, 484
MseI	TTAA	2 cut(s)	264, 786
MslI	CAYNNNNRTG	3 cut(s)	134, 572, 699
Msp20I	TGGCCA	3 cut(s)	311, 387, 484
MspR9I	CCNGG	3 cut(s)	257, 366, 389
MunI	CAATTG	1 cut(s)	906
MvaI	CCWGG	3 cut(s)	257, 366, 389
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	2 cut(s)	277, 810
NlaIV	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
NmuCI	GTSAC	3 cut(s)	35, 877, 910
NspI	RCATGY	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	290
PciI	ACATGT	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	553, 1072
PflFI	GACNNNGTC	2 cut(s)	47, 687
PflMI	CCANNNNNTGG	2 cut(s)	418, 480
PkrI	GCNGC	2 cut(s)	330, 726
PpuMI	RGGWCCY	1 cut(s)	778
PscI	ACATGT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	3 cut(s)	255, 364, 387
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	3 cut(s)	255, 364, 387
PspN4I	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
PspPI	GGNCC	4 cut(s)	4, 189, 778, 947
PspPPI	RGGWCCY	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	556
PsyI	GACNNNGTC	2 cut(s)	47, 687
RsaI	GTAC	2 cut(s)	12, 453
RsaNI	GTAC	2 cut(s)	11, 452
RseI	CAYNNNNRTG	3 cut(s)	134, 572, 699
SaqAI	TTAA	2 cut(s)	264, 786
SatI	GCNGC	2 cut(s)	329, 725
Sau3AI	GATC	2 cut(s)	277, 810
Sau96I	GGNCC	4 cut(s)	4, 189, 778, 947
ScrFI	CCNGG	3 cut(s)	257, 366, 389
SduI	GDGCHC	1 cut(s)	712
Sfr274I	CTCGAG	1 cut(s)	290
SinI	GGWCC	3 cut(s)	189, 778, 947
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	3 cut(s)	134, 572, 699
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	6 cut(s)	166, 317, 416, 499, 906, 959
SspMI	CTAG	2 cut(s)	674, 927
StyD4I	CCNGG	3 cut(s)	255, 364, 387
StyI	CCWWGG	3 cut(s)	312, 580, 1056
TaaI	ACNGT	3 cut(s)	373, 718, 1016
TaqI	TCGA	1 cut(s)	291
TasI	AATT	6 cut(s)	166, 317, 416, 499, 906, 959
TfiI	GAWTC	2 cut(s)	553, 1072
Tru1I	TTAA	2 cut(s)	264, 786
Tru9I	TTAA	2 cut(s)	264, 786
TscAI	CASTG	4 cut(s)	154, 511, 750, 882
TseFI	GTSAC	3 cut(s)	35, 877, 910
TseI	GCWGC	2 cut(s)	328, 724
Tsp45I	GTSAC	3 cut(s)	35, 877, 910
TspDTI	ATGAA	3 cut(s)	213, 313, 656
TspRI	CASTG	4 cut(s)	154, 511, 750, 882
Tth111I	GACNNNGTC	2 cut(s)	47, 687
Van91I	CCANNNNNTGG	2 cut(s)	418, 480
VpaK11BI	GGWCC	3 cut(s)	189, 778, 947
XapI	RAATTY	2 cut(s)	317, 499
XceI	RCATGY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	2 cut(s)	674, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.