Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Reverse (-)

43663285 .. 43665187

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCCCAATTCCCATTTCTCCTGTTAAGGTTGGTCACATTGATGATGTCCAAGAGCTGAGAAAGACTAAACCCACCATAATTCCTGAAAGATTTGTAAGGGACAAAACTGAGAGACCAACAACTTTAGCCACTGCTATACCATCCTCTAGTGACATTCCCACTATCAATTTCTCTAAGCTTTCCAGTGGAAACACAGATGAACTCAGAACTGAAATCTCTCATCTCACAACCGCTTGCAAGGACTGGGGATTTTTTCAGGTGGTAAATCATGGGATTGATCTGAGTCTGCTTGAGAGTATAGAGAAGGTAGCCCAGGATTTCTTCATGCTACCTTTGGCAGAGAAACAGAAGTATCCAATGGCTCCTGGTACTGTTCAAGGATATGGACAAGCTTTTGTTTTATCAGAGGACCAAAAACTTGATTGGTGCAACATGTTTGCTCTTGGGGTTGAACCTAAGTTTATACGGAACCCGTTACTATGGCCAACAAAACCGGAAAAGTTCAGTGAAACTGTAGAGGTCTATTCAAAAGAAGTGAGGAAACTATGCCAGTATCTGTTGAAGTACATAGCCATGAGCCTCGGCTTGCAAGGTGACATCTTTGAAAAGATGTTTGGGGAGGCTGTTCAAGCCATAAGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTTGTTTTAGGCCTAAGCCCACATTCAGATGGGAGCGCCCTAACAGTTCTGCAGCAAGGGAAGGACAACTCAGTAGGACTTCAAATCCTCAAAGATGACAGATGGGTACCTGTTCAGCCCATTCCCAATGCTCTTGTGATCAACATTGGGGACACCATAGAAGTTCTTACAAATGGGATCTATAAGAGTGTGGAGCATAGAGCAGTGACTCACAAGGTGAAAGATAGGCTTTCAATCGTCACATTTTATGCTCCTAGCTATGAGGTAGAGCTTGGACCTGTGCAAGAACTGCTGGATGAAAACACTCCATGCAAGTATAGAAGATACAATCATGGAGAGTACAGCAAACACTATGTTACAAACAAGTTGCAAGGGAAAAAAACACTCGAGTTTGCCAAGATTCAAAGCAGAAGTTCAAACCAAGAAGAACCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.85

Weight (kDa)

6.47

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 164	4.3e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 310	2.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	781
AccB1I	GGYRCC	1 cut(s)	781
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	485
AdeI	CACNNNGTG	1 cut(s)	892
AfaI	GTAC	4 cut(s)	373, 569, 783, 1016
AflIII	ACRYGT	1 cut(s)	435
AjnI	CCWGG	2 cut(s)	315, 367
AjuI	GAANNNNNNNTTGG	3 cut(s)	33, 600, 632
AluBI	AGCT	5 cut(s)	58, 181, 395, 933, 946
AluI	AGCT	5 cut(s)	58, 181, 395, 933, 946
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	559
Ama87I	CYCGRG	1 cut(s)	1061
AoxI	GGCC	3 cut(s)	3, 485, 685
ApeKI	GCWGC	1 cut(s)	727
Asp718I	GGTACC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	4, 412, 950
AsuHPI	GGTGA	2 cut(s)	608, 904
AvaI	CYCGRG	1 cut(s)	1061
AvaII	GGWCC	2 cut(s)	412, 950
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BalI	TGGCCA	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	781
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	3 cut(s)	151, 698, 771
BciT130I	CCWGG	2 cut(s)	317, 369
BciVI	GTATCC	1 cut(s)	366
BclI	TGATCA	1 cut(s)	813
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	150, 930
BfmI	CTRYAG	2 cut(s)	516, 725
BfoI	RGCGCY	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	729
Bme1390I	CCNGG	2 cut(s)	317, 369
Bme18I	GGWCC	2 cut(s)	412, 950
BmeT110I	CYCGRG	1 cut(s)	1061
BmgT120I	GGNCC	3 cut(s)	4, 412, 950
BmiI	GGNNCC	4 cut(s)	6, 366, 473, 783
BmrFI	CCNGG	2 cut(s)	317, 369
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	315, 583
BsaWI	WCCGGW	1 cut(s)	496
Bse1I	ACTGG	3 cut(s)	186, 251, 553
BseBI	CCWGG	2 cut(s)	317, 369
BseDI	CCNNGG	2 cut(s)	315, 583
BseGI	GGATG	3 cut(s)	143, 648, 976
BseMII	CTCAG	5 cut(s)	50, 102, 220, 275, 759
BseNI	ACTGG	3 cut(s)	186, 251, 553
BseXI	GCAGC	1 cut(s)	739
BshFI	GGCC	3 cut(s)	5, 487, 687
BshNI	GGYRCC	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	1061
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	116, 839
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	116, 839
BsnI	GGCC	3 cut(s)	5, 487, 687
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	1061
Bsp143I	GATC	3 cut(s)	280, 813, 852
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	3 cut(s)	5, 487, 687
BspCNI	CTCAG	5 cut(s)	51, 103, 219, 276, 758
BspLI	GGNNCC	4 cut(s)	6, 366, 473, 783
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	1 cut(s)	860
BspT107I	GGYRCC	1 cut(s)	781
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	3 cut(s)	186, 251, 553
BssECI	CCNNGG	2 cut(s)	315, 583
BssMI	GATC	3 cut(s)	280, 813, 852
Bst2UI	CCWGG	2 cut(s)	317, 369
Bst4CI	ACNGT	3 cut(s)	376, 517, 721
BstAPI	GCANNNNNTGC	1 cut(s)	964
BstC8I	GCNNGC	2 cut(s)	238, 590
BstDEI	CTNAG	8 cut(s)	59, 111, 177, 206, 284, 459, 689, 745
BstF5I	GGATG	3 cut(s)	143, 648, 976
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	3 cut(s)	283, 816, 855
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	280, 813, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 964
BstNI	CCWGG	2 cut(s)	317, 369
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	315, 367
BstSFI	CTRYAG	2 cut(s)	516, 725
BstV1I	GCAGC	1 cut(s)	739
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	5, 487, 687
BtsCI	GGATG	3 cut(s)	143, 648, 976
BtsI	GCAGTG	2 cut(s)	132, 885
BtsIMutI	CAGTG	4 cut(s)	132, 193, 514, 885
Cac8I	GCNNGC	2 cut(s)	238, 590
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	4, 412, 950
Csp6I	GTAC	4 cut(s)	372, 568, 782, 1015
CviAII	CATG	8 cut(s)	272, 328, 436, 577, 660, 984, 1007, 1108
CviQI	GTAC	4 cut(s)	372, 568, 782, 1015
DdeI	CTNAG	8 cut(s)	59, 111, 177, 206, 284, 459, 689, 745
DpnI	GATC	3 cut(s)	282, 815, 854
DpnII	GATC	3 cut(s)	280, 813, 852
DraIII	CACNNNGTG	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	485
Eco147I	AGGCCT	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	412, 950
Eco88I	CYCGRG	1 cut(s)	1061
EcoRII	CCWGG	2 cut(s)	315, 367
FaeI	CATG	8 cut(s)	275, 331, 439, 580, 663, 987, 1010, 1111
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	2 cut(s)	116, 839
FatI	CATG	8 cut(s)	271, 327, 435, 576, 659, 983, 1006, 1107
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	728
FokI	GGATG	3 cut(s)	130, 655, 983
Fsp4HI	GCNGC	1 cut(s)	728
FspBI	CTAG	2 cut(s)	150, 930
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	5, 487, 687
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	8 cut(s)	275, 331, 439, 580, 663, 987, 1010, 1111
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HindIII	AAGCTT	2 cut(s)	179, 393
HinfI	GANTC	3 cut(s)	286, 883, 1075
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	2 cut(s)	608, 904
Hpy188I	TCNGA	4 cut(s)	209, 285, 409, 703
Hpy188III	TCNNGA	2 cut(s)	86, 666
HpyAV	CCTTC	2 cut(s)	301, 730
HpyCH4III	ACNGT	3 cut(s)	376, 517, 721
HpyCH4V	TGCA	7 cut(s)	240, 432, 592, 727, 958, 987, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 964
HpyF3I	CTNAG	8 cut(s)	59, 111, 177, 206, 284, 459, 689, 745
Hsp92II	CATG	8 cut(s)	275, 331, 439, 580, 663, 987, 1010, 1111
HspAI	GCGC	1 cut(s)	711
KpnI	GGTACC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	3 cut(s)	280, 813, 852
LmnI	GCTCC	4 cut(s)	370, 708, 868, 931
Lsp1109I	GCAGC	1 cut(s)	739
MaeI	CTAG	2 cut(s)	150, 930
MaeIII	GTNAC	7 cut(s)	35, 152, 477, 596, 880, 913, 1030
MalI	GATC	3 cut(s)	282, 815, 854
MboI	GATC	3 cut(s)	280, 813, 852
MboII	GAAGA	3 cut(s)	316, 1008, 1112
MflI	RGATCY	1 cut(s)	852
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	3 cut(s)	9, 81, 169
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	2 cut(s)	295, 877
MnlI	CCTC	9 cut(s)	157, 403, 514, 534, 593, 616, 666, 773, 931
Mox20I	TGGCCA	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	4 cut(s)	42, 575, 641, 702
Msp20I	TGGCCA	1 cut(s)	487
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	317, 369
MvaI	CCWGG	2 cut(s)	317, 369
MwoI	GCNNNNNNNGC	2 cut(s)	632, 964
NdeII	GATC	3 cut(s)	280, 813, 852
NlaIII	CATG	8 cut(s)	275, 331, 439, 580, 663, 987, 1010, 1111
NlaIV	GGNNCC	4 cut(s)	6, 366, 473, 783
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	5 cut(s)	35, 152, 596, 880, 913
NspI	RCATGY	1 cut(s)	439
PaeR7I	CTCGAG	1 cut(s)	1061
PceI	AGGCCT	1 cut(s)	687
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	1075
PkrI	GCNGC	1 cut(s)	729
PleI	GAGTC	2 cut(s)	294, 877
PpsI	GAGTC	2 cut(s)	294, 877
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	315, 367
PspGI	CCWGG	2 cut(s)	315, 367
PspN4I	GGNNCC	4 cut(s)	6, 366, 473, 783
PspPI	GGNCC	3 cut(s)	4, 412, 950
PspXI	VCTCGAGB	1 cut(s)	1061
PstI	CTGCAG	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	852
RsaI	GTAC	4 cut(s)	373, 569, 783, 1016
RsaNI	GTAC	4 cut(s)	372, 568, 782, 1015
RseI	CAYNNNNRTG	4 cut(s)	42, 575, 641, 702
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	3 cut(s)	280, 813, 852
Sau96I	GGNCC	3 cut(s)	4, 412, 950
SchI	GAGTC	2 cut(s)	295, 877
ScrFI	CCNGG	2 cut(s)	317, 369
SfcI	CTRYAG	2 cut(s)	516, 725
Sfr274I	CTCGAG	1 cut(s)	1061
SinI	GGWCC	2 cut(s)	412, 950
SlaI	CTCGAG	1 cut(s)	1061
SmiMI	CAYNNNNRTG	4 cut(s)	42, 575, 641, 702
SmlI	CTYRAG	2 cut(s)	293, 1061
SmoI	CTYRAG	2 cut(s)	293, 1061
Sse9I	AATT	3 cut(s)	9, 81, 169
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	150, 930
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	315, 367
TaaI	ACNGT	3 cut(s)	376, 517, 721
TaqI	TCGA	1 cut(s)	1062
TasI	AATT	3 cut(s)	9, 81, 169
TatI	WGTACW	2 cut(s)	567, 1014
TfiI	GAWTC	1 cut(s)	1075
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	4 cut(s)	139, 193, 514, 885
TseFI	GTSAC	5 cut(s)	35, 152, 596, 880, 913
TseI	GCWGC	1 cut(s)	727
Tsp45I	GTSAC	5 cut(s)	35, 152, 596, 880, 913
TspDTI	ATGAA	4 cut(s)	216, 316, 659, 987
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	4 cut(s)	139, 193, 514, 885
VpaK11BI	GGWCC	2 cut(s)	412, 950
XceI	RCATGY	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	1061
XspI	CTAG	2 cut(s)	150, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.