pycom13g14590

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014234
Physical Location & Seq
Reverse (-)
10571441 .. 10573349
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14590.4

Sequence Viewer

Length: 1095 bp
ATGGCCCCTGTACCGATTTATCCCATCAAGGTTGGTCACATTGACGATGTCCAGGAACTCAGAAAATCCAAGCCCTCTATTATTCCTGAGAGATTTGTGAGGGACATGACTGAGAGGCCAGCACTTGCCACTCCCATGCCATGCTCCGCTGACATTCCCACCATCAATTTCTCAAAGCTTGCAAAAGGGACCAAAGATGAAATCAAAAGTGAGATTTCCCAGCTTGCAAATGCCTGTGAGAACTGGGGATTTTTCCAGGTGGTTAATCATGGGATTGATCTGAGTATACTCGAAAGCATAGAGAAGATGGCCAAGGAATTTTTTATGCTGCCTTTGGAGGAGAAGAAGAAGTATGCGATGGCTCCTGGGACTGTTCAGGGATATGGCCAGGCTTTTGTTTTATCAGAAGACCAAAAATTGGACTGGTGCAATATGTTTGCTCTTGGGGTTGTACCAAACTTTATAAGAAACCCCATGTTATGGCCAACAAACCCAGAAAATTTCAGTGAAAGTGTTGAGGTCTATTCAAAGGAAGTGAGGAAGCTGTGCCAGAATCTGCTGAAATACATAGCCATGAGCCTTGGATTGAAAGGTGATGTGTTTGAGAAGATGTTTGGGGAGGCTGTGCAAGCCCTAAGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTAGTTTTGGGACTAAGTCCACACTCAGATGGAAGTGCCATCACAGTTTTGCAGCAAGGGAAGGGCAACTCAGTGGGACTTCAAATCCTCAAAGATGATAGATGGGTCCCTGTTAAGCCCATTCCTAATGCACTTGTGATCAACATTGGAGACACCATAGAAGTTCTTACAAATGGGAAATACAAGAGTGTGGAGCATAGAGCAGTGACACACAAGGAGAAAGACAGGCTTTCAATTGTGACATTTTATGCTCCTAGCTATGAGATAGAGCTTGGACCAATGGCAGAATTGGTGGATGAAAACAACCCATGCAAGTATAGAAGATACAATCATGGAGAATACAGTAAACACTATGTAACAAACAAGTTGCAAGGCAAGAAAACCTTGGAGTTTGCCAAGATTCAAACCAAAATCTCAAATTAA

Protein Analysis

365

Amino Acids

41.11

Weight (kDa)

8.06

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21420
fragaria_vesca FvH4_4g17720 FvH4_4g17720
malus_domestica MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica Prupe.1G138800_v2.0.a1
pyrus_communis pycom13g14590
rosa_chinensis RchiOBHm_Chr4g0421691
rosa_laevigata RLG00000007658
rosa_multiflora Rmu_sc0004533.1_g000010
rosa_roxburghii Rroxscaffold_5G00363930
rosa_rugosa Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha Rh4CG248900 Rh4DG232800
rosa_wichuraiana Rw4G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AccB7I CCANNNNNTGG 2 cut(s) 418, 480
AccI GTMKAC 1 cut(s) 286
AciI CCGC 1 cut(s) 147
AcoI YGGCCR 3 cut(s) 309, 385, 482
AcsI RAATTY 2 cut(s) 317, 499
AfaI GTAC 2 cut(s) 12, 453
AfiI CCNNNNNNNGG 3 cut(s) 418, 480, 679
AgsI TTSAA 6 cut(s) 528, 589, 663, 755, 906, 1076
AjnI CCWGG 4 cut(s) 51, 255, 364, 387
AluBI AGCT 5 cut(s) 178, 223, 544, 930, 943
AluI AGCT 5 cut(s) 178, 223, 544, 930, 943
Alw26I GTCTC 1 cut(s) 816
AlwNI CAGNNNCTG 1 cut(s) 556
AoxI GGCC 5 cut(s) 3, 116, 309, 385, 482
ApeKI GCWGC 2 cut(s) 328, 724
ApoI RAATTY 2 cut(s) 317, 499
AspS9I GGNCC 4 cut(s) 4, 189, 778, 947
AsuHPI GGTGA 1 cut(s) 605
AvaII GGWCC 3 cut(s) 189, 778, 947
AxyI CCTNAGG 1 cut(s) 635
BalI TGGCCA 3 cut(s) 311, 387, 484
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 315, 736
BccI CCATC 7 cut(s) 32, 170, 301, 352, 695, 719, 768
BciT130I CCWGG 4 cut(s) 53, 257, 366, 389
BclI TGATCA 1 cut(s) 810
BcoDI GTCTC 1 cut(s) 816
BfaI CTAG 2 cut(s) 674, 927
BisI GCNGC 2 cut(s) 329, 725
BlsI GCNGC 2 cut(s) 330, 726
Bme1390I CCNGG 4 cut(s) 53, 257, 366, 389
Bme18I GGWCC 3 cut(s) 189, 778, 947
BmgT120I GGNCC 4 cut(s) 4, 189, 778, 947
BmiI GGNNCC 5 cut(s) 6, 190, 363, 779, 780
BmrFI CCNGG 4 cut(s) 53, 257, 366, 389
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 312, 365, 580, 1056
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 480, 679
Bse1I ACTGG 2 cut(s) 248, 428
Bse21I CCTNAGG 1 cut(s) 635
BseBI CCWGG 4 cut(s) 53, 257, 366, 389
BseDI CCNNGG 4 cut(s) 312, 365, 580, 1056
BseGI GGATG 2 cut(s) 645, 973
BseLI CCNNNNNNNGG 3 cut(s) 418, 480, 679
BseMII CTCAG 6 cut(s) 73, 78, 102, 272, 711, 756
BseNI ACTGG 2 cut(s) 248, 428
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 2 cut(s) 315, 736
BseYI CCCAGC 1 cut(s) 219
BshFI GGCC 5 cut(s) 5, 118, 311, 387, 484
BslFI GGGAC 6 cut(s) 116, 202, 382, 696, 762, 764
BslI CCNNNNNNNGG 3 cut(s) 418, 480, 679
BsmAI GTCTC 1 cut(s) 816
BsmFI GGGAC 6 cut(s) 116, 202, 382, 696, 762, 764
BsnI GGCC 5 cut(s) 5, 118, 311, 387, 484
Bsp143I GATC 2 cut(s) 277, 810
BspACI CCGC 1 cut(s) 147
BspANI GGCC 5 cut(s) 5, 118, 311, 387, 484
BspCNI CTCAG 6 cut(s) 72, 79, 103, 273, 710, 755
BspLI GGNNCC 5 cut(s) 6, 190, 363, 779, 780
BsrI ACTGG 2 cut(s) 248, 428
BssECI CCNNGG 4 cut(s) 312, 365, 580, 1056
BssMI GATC 2 cut(s) 277, 810
BssNAI GTATAC 1 cut(s) 287
BssT1I CCWWGG 3 cut(s) 312, 580, 1056
Bst1107I GTATAC 1 cut(s) 287
Bst2UI CCWGG 4 cut(s) 53, 257, 366, 389
Bst4CI ACNGT 3 cut(s) 373, 718, 1016
BstC8I GCNNGC 4 cut(s) 120, 180, 225, 630
BstDEI CTNAG 8 cut(s) 59, 87, 111, 281, 635, 686, 697, 742
BstF5I GGATG 2 cut(s) 645, 973
BstKTI GATC 2 cut(s) 280, 813
BstMAI GTCTC 1 cut(s) 816
BstMBI GATC 2 cut(s) 277, 810
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 4 cut(s) 53, 257, 366, 389
BstSCI CCNGG 4 cut(s) 51, 255, 364, 387
BstV1I GCAGC 2 cut(s) 315, 736
BstV2I GAAGAC 1 cut(s) 414
BstZ17I GTATAC 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 635
BsuRI GGCC 5 cut(s) 5, 118, 311, 387, 484
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 645, 973
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 3 cut(s) 511, 750, 882
Cac8I GCNNGC 4 cut(s) 120, 180, 225, 630
CaiI CAGNNNCTG 1 cut(s) 556
Cfr13I GGNCC 4 cut(s) 4, 189, 778, 947
Csp6I GTAC 2 cut(s) 11, 452
CviAII CATG 9 cut(s) 106, 136, 141, 269, 475, 574, 657, 981, 1004
CviQI GTAC 2 cut(s) 11, 452
DdeI CTNAG 8 cut(s) 59, 87, 111, 281, 635, 686, 697, 742
DpnI GATC 2 cut(s) 279, 812
DpnII GATC 2 cut(s) 277, 810
EaeI YGGCCR 3 cut(s) 309, 385, 482
Eco130I CCWWGG 3 cut(s) 312, 580, 1056
Eco47I GGWCC 3 cut(s) 189, 778, 947
Eco81I CCTNAGG 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 778
EcoRII CCWGG 4 cut(s) 51, 255, 364, 387
EcoT14I CCWWGG 3 cut(s) 312, 580, 1056
ErhI CCWWGG 3 cut(s) 312, 580, 1056
FaeI CATG 9 cut(s) 109, 139, 144, 272, 478, 577, 660, 984, 1007
FalI AAGNNNNNCTT 4 cut(s) 885, 917, 1040, 1072
FaqI GGGAC 6 cut(s) 116, 202, 382, 696, 762, 764
FatI CATG 9 cut(s) 105, 135, 140, 268, 474, 573, 656, 980, 1003
FbaI TGATCA 1 cut(s) 810
FblI GTMKAC 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 329, 725
FokI GGATG 2 cut(s) 652, 980
Fsp4HI GCNGC 2 cut(s) 329, 725
FspBI CTAG 2 cut(s) 674, 927
GluI GCNGC 2 cut(s) 329, 725
GsaI CCCAGC 1 cut(s) 223
HaeIII GGCC 5 cut(s) 5, 118, 311, 387, 484
Hin1II CATG 9 cut(s) 109, 139, 144, 272, 478, 577, 660, 984, 1007
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 553, 1072
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 3 cut(s) 287, 692, 1019
Hpy188I TCNGA 4 cut(s) 62, 282, 406, 700
Hpy188III TCNNGA 2 cut(s) 86, 663
Hpy8I GTNNAC 3 cut(s) 287, 692, 1019
HpyAV CCTTC 1 cut(s) 727
HpyCH4III ACNGT 3 cut(s) 373, 718, 1016
HpyCH4V TGCA 8 cut(s) 182, 227, 429, 628, 724, 803, 984, 1042
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 8 cut(s) 59, 87, 111, 281, 635, 686, 697, 742
Hsp92II CATG 9 cut(s) 109, 139, 144, 272, 478, 577, 660, 984, 1007
KflI GGGWCCC 1 cut(s) 778
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 2 cut(s) 277, 810
LmnI GCTCC 4 cut(s) 149, 367, 865, 928
Lsp1109I GCAGC 2 cut(s) 315, 736
MaeI CTAG 2 cut(s) 674, 927
MaeIII GTNAC 4 cut(s) 35, 877, 910, 1027
MalI GATC 2 cut(s) 279, 812
MboI GATC 2 cut(s) 277, 810
MboII GAAGA 6 cut(s) 316, 355, 358, 419, 619, 1005
MfeI CAATTG 1 cut(s) 906
MlsI TGGCCA 3 cut(s) 311, 387, 484
MluCI AATT 7 cut(s) 166, 317, 416, 499, 906, 959, 1090
MluNI TGGCCA 3 cut(s) 311, 387, 484
MnlI CCTC 9 cut(s) 85, 93, 108, 331, 511, 531, 613, 663, 770
Mox20I TGGCCA 3 cut(s) 311, 387, 484
MscI TGGCCA 3 cut(s) 311, 387, 484
MseI TTAA 3 cut(s) 264, 786, 1093
MslI CAYNNNNRTG 3 cut(s) 134, 572, 699
Msp20I TGGCCA 3 cut(s) 311, 387, 484
MspA1I CMGCKG 1 cut(s) 149
MspR9I CCNGG 4 cut(s) 53, 257, 366, 389
MunI CAATTG 1 cut(s) 906
MvaI CCWGG 4 cut(s) 53, 257, 366, 389
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 2 cut(s) 277, 810
NlaIII CATG 9 cut(s) 109, 139, 144, 272, 478, 577, 660, 984, 1007
NlaIV GGNNCC 5 cut(s) 6, 190, 363, 779, 780
NmuCI GTSAC 3 cut(s) 35, 877, 910
PfeI GAWTC 2 cut(s) 553, 1072
PflFI GACNNNGTC 2 cut(s) 47, 687
PflMI CCANNNNNTGG 2 cut(s) 418, 480
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 2 cut(s) 330, 726
PpuMI RGGWCCY 1 cut(s) 778
PsiI TTATAA 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 4 cut(s) 51, 255, 364, 387
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 4 cut(s) 51, 255, 364, 387
PspN4I GGNNCC 5 cut(s) 6, 190, 363, 779, 780
PspPI GGNCC 4 cut(s) 4, 189, 778, 947
PspPPI RGGWCCY 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 556
PsyI GACNNNGTC 2 cut(s) 47, 687
RsaI GTAC 2 cut(s) 12, 453
RsaNI GTAC 2 cut(s) 11, 452
RseI CAYNNNNRTG 3 cut(s) 134, 572, 699
SaqAI TTAA 3 cut(s) 264, 786, 1093
SatI GCNGC 2 cut(s) 329, 725
Sau3AI GATC 2 cut(s) 277, 810
Sau96I GGNCC 4 cut(s) 4, 189, 778, 947
ScrFI CCNGG 4 cut(s) 53, 257, 366, 389
SinI GGWCC 3 cut(s) 189, 778, 947
SmiMI CAYNNNNRTG 3 cut(s) 134, 572, 699
Sse9I AATT 7 cut(s) 166, 317, 416, 499, 906, 959, 1090
SsiI CCGC 1 cut(s) 147
SspMI CTAG 2 cut(s) 674, 927
StyD4I CCNGG 4 cut(s) 51, 255, 364, 387
StyI CCWWGG 3 cut(s) 312, 580, 1056
TaaI ACNGT 3 cut(s) 373, 718, 1016
TaqI TCGA 1 cut(s) 291
TasI AATT 7 cut(s) 166, 317, 416, 499, 906, 959, 1090
TfiI GAWTC 2 cut(s) 553, 1072
Tru1I TTAA 3 cut(s) 264, 786, 1093
Tru9I TTAA 3 cut(s) 264, 786, 1093
TscAI CASTG 3 cut(s) 511, 750, 882
TseFI GTSAC 3 cut(s) 35, 877, 910
TseI GCWGC 2 cut(s) 328, 724
Tsp45I GTSAC 3 cut(s) 35, 877, 910
TspDTI ATGAA 3 cut(s) 213, 656, 984
TspRI CASTG 3 cut(s) 511, 750, 882
Tth111I GACNNNGTC 2 cut(s) 47, 687
Van91I CCANNNNNTGG 2 cut(s) 418, 480
VpaK11BI GGWCC 3 cut(s) 189, 778, 947
XapI RAATTY 2 cut(s) 317, 499
XmiI GTMKAC 1 cut(s) 286
XspI CTAG 2 cut(s) 674, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.