Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Reverse (-)

10859579 .. 10861779

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCCCCAATACCCATCTCCTCCGTCAAGGTTGGACACATTGATGATGTTCAAGAACTGAGAAAGACTAAGCCCACCATAATTCCTGACAGATTTGTAAGGGACATGGCTGAGAGGCCAACTCTGGCCCCTGCCATGCCATGCTCTAGTGACATTCCCACAATCAACTTCTCAAAGCTTTCAAAAGGAAGCACAGATGAACTCAAAAGTGAAATCTCTCAGCTTGCTGCTGCCTGTGAGCACTGGGGATTTTTCCAGGTGATAAATCATGGGATTGATCTGAGTCTGCTTGAGAGCATGGAGAAAGTGGCCAAGGACTTCTTCATGCTACCTTTGGAAGAGAAAAAGAAGTATGCAATGGCTCCTGGGACTGTTCAGGGATATGGGCAGGCTTTTGTGCTATCCGAGGACCAAAAACTGGATTGGTGCAACATGTTTGCTCTTGGGGTTGAACCCAACTTTATAAGGAACCCCATGTTATGGCCAACAGAACCAGAAAAGTTCAGTGGAACTGTAGAGGTTTACTCAAAAGAAGTAAGGAAACTGTGCCAGAATCTGCTGAAATACATAGCCATGGGCCTTGGCTTAAAAGGTGATGTGTTTGAAAAGATGTTTGGGGAGACTGTGCAAGCCATAAGGATGAACTATTACCCTCCATGTTCAAGACCTGACCTTGTTTTAGGTCTAAGCCCACATTCAGATGGAAGTGCCCTCACAGTGCTGCAGCAGGGGAAGGACACGTCAGTAGGACTTCAAATTCTCAAAGATGACAGATGGGTTCCTGTTAAGCCCATCCCTAATGCACTCATAATCAACATTGGTGACACCACAGAAGTTCTTACAAATGGGAAATATAAGAGTGTGGAGCACAGAGCAGTGACTAATAAGGAGAAAGACCGCCTTTCAATTGTGACATTTTATGCTCCTAGCTATGAGATAGAGCTTGGACCTATGGAAGAACTGGTGGATGAAAACAACCCATGCAAGTACAGAAGATACATTCATGGAGAATACAGTAAACACTATGTAACCAACAAGTTGCAAGGCAAGAAAACCTTGGAGTTTGCCAAGATTTCAAATCAAAAACTCAAACTAGTTAAAACAGACCCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

372

Amino Acids

41.84

Weight (kDa)

7.04

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB7I	CCANNNNNTGG	2 cut(s)	418, 480
AciI	CCGC	1 cut(s)	898
AcoI	YGGCCR	2 cut(s)	309, 482
AcsI	RAATTY	1 cut(s)	756
AfaI	GTAC	1 cut(s)	989
AfiI	CCNNNNNNNGG	2 cut(s)	418, 480
AflIII	ACRYGT	2 cut(s)	432, 738
AgsI	TTSAA	8 cut(s)	53, 183, 452, 605, 663, 755, 906, 1077
AhlI	ACTAGT	1 cut(s)	1093
AjiI	CACGTC	1 cut(s)	741
AjnI	CCWGG	2 cut(s)	255, 364
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 597, 629
AluBI	AGCT	4 cut(s)	178, 223, 930, 943
AluI	AGCT	4 cut(s)	178, 223, 930, 943
Alw21I	GWGCWC	2 cut(s)	243, 870
Alw26I	GTCTC	1 cut(s)	614
AlwNI	CAGNNNCTG	1 cut(s)	556
AoxI	GGCC	6 cut(s)	3, 116, 126, 309, 482, 577
ApeKI	GCWGC	4 cut(s)	227, 230, 721, 724
ApoI	RAATTY	1 cut(s)	756
AspS9I	GGNCC	5 cut(s)	4, 127, 409, 577, 947
AsuHPI	GGTGA	3 cut(s)	271, 605, 833
AvaII	GGWCC	2 cut(s)	409, 947
BaeGI	GKGCMC	1 cut(s)	712
BalI	TGGCCA	2 cut(s)	311, 484
Bbv12I	GWGCWC	2 cut(s)	243, 870
BbvI	GCAGC	4 cut(s)	214, 217, 708, 736
BccI	CCATC	4 cut(s)	23, 695, 768, 800
BciT130I	CCWGG	2 cut(s)	257, 366
BcoDI	GTCTC	1 cut(s)	614
BcuI	ACTAGT	1 cut(s)	1093
BfaI	CTAG	3 cut(s)	147, 927, 1094
BfmI	CTRYAG	2 cut(s)	513, 722
BisI	GCNGC	4 cut(s)	228, 231, 722, 725
BlsI	GCNGC	4 cut(s)	229, 232, 723, 726
Bme1390I	CCNGG	2 cut(s)	257, 366
Bme18I	GGWCC	2 cut(s)	409, 947
BmgBI	CACGTC	1 cut(s)	741
BmgT120I	GGNCC	5 cut(s)	4, 127, 409, 577, 947
BmiI	GGNNCC	5 cut(s)	6, 129, 363, 470, 780
BmrFI	CCNGG	2 cut(s)	257, 366
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BplI	GAGNNNNNCTC	4 cut(s)	106, 138, 509, 541
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	6 cut(s)	312, 365, 405, 573, 580, 1056
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 480
Bse1I	ACTGG	3 cut(s)	248, 423, 966
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	257, 366
BseDI	CCNNGG	6 cut(s)	312, 365, 405, 573, 580, 1056
BseGI	GGATG	3 cut(s)	645, 792, 973
BseLI	CCNNNNNNNGG	2 cut(s)	418, 480
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	4 cut(s)	50, 102, 233, 272
BseNI	ACTGG	3 cut(s)	248, 423, 966
BseRI	GAGGAG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	4 cut(s)	214, 217, 708, 736
BshFI	GGCC	6 cut(s)	5, 118, 128, 311, 484, 579
BsiHKAI	GWGCWC	2 cut(s)	243, 870
BslFI	GGGAC	2 cut(s)	116, 382
BslI	CCNNNNNNNGG	2 cut(s)	418, 480
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	2 cut(s)	116, 382
BsnI	GGCC	6 cut(s)	5, 118, 128, 311, 484, 579
Bsp1286I	GDGCHC	3 cut(s)	243, 712, 870
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	1 cut(s)	898
BspANI	GGCC	6 cut(s)	5, 118, 128, 311, 484, 579
BspCNI	CTCAG	4 cut(s)	51, 103, 232, 273
BspLI	GGNNCC	5 cut(s)	6, 129, 363, 470, 780
BspMAI	CTGCAG	1 cut(s)	726
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	248, 423, 966
BssECI	CCNNGG	6 cut(s)	312, 365, 405, 573, 580, 1056
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	4 cut(s)	312, 573, 580, 1056
Bst2UI	CCWGG	2 cut(s)	257, 366
Bst4CI	ACNGT	6 cut(s)	373, 514, 546, 625, 718, 1016
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	225, 390, 630
BstDEI	CTNAG	6 cut(s)	59, 69, 111, 219, 281, 686
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	645, 792, 973
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	257, 366
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	255, 364
BstSFI	CTRYAG	2 cut(s)	513, 722
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	4 cut(s)	214, 217, 708, 736
BsuRI	GGCC	6 cut(s)	5, 118, 128, 311, 484, 579
BtgI	CCRYGG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	741
BtsCI	GGATG	3 cut(s)	645, 792, 973
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	4 cut(s)	241, 511, 723, 882
Cac8I	GCNNGC	3 cut(s)	225, 390, 630
CaiI	CAGNNNCTG	1 cut(s)	556
Cfr13I	GGNCC	5 cut(s)	4, 127, 409, 577, 947
Csp6I	GTAC	1 cut(s)	988
CviQI	GTAC	1 cut(s)	988
DdeI	CTNAG	6 cut(s)	59, 69, 111, 219, 281, 686
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	309, 482
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	4 cut(s)	312, 573, 580, 1056
Eco47I	GGWCC	2 cut(s)	409, 947
EcoRII	CCWGG	2 cut(s)	255, 364
EcoT14I	CCWWGG	4 cut(s)	312, 573, 580, 1056
ErhI	CCWWGG	4 cut(s)	312, 573, 580, 1056
FalI	AAGNNNNNCTT	6 cut(s)	305, 337, 885, 917, 1040, 1072
FaqI	GGGAC	2 cut(s)	116, 382
Fnu4HI	GCNGC	4 cut(s)	228, 231, 722, 725
FokI	GGATG	3 cut(s)	652, 779, 980
Fsp4HI	GCNGC	4 cut(s)	228, 231, 722, 725
FspBI	CTAG	3 cut(s)	147, 927, 1094
GluI	GCNGC	4 cut(s)	228, 231, 722, 725
HaeIII	GGCC	6 cut(s)	5, 118, 128, 311, 484, 579
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	283, 553
HphI	GGTGA	3 cut(s)	271, 605, 833
Hpy166II	GTNNAC	2 cut(s)	523, 1019
Hpy188I	TCNGA	3 cut(s)	282, 406, 700
Hpy188III	TCNNGA	3 cut(s)	53, 86, 663
Hpy8I	GTNNAC	2 cut(s)	523, 1019
HpyAV	CCTTC	1 cut(s)	727
HpyCH4III	ACNGT	6 cut(s)	373, 514, 546, 625, 718, 1016
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	7 cut(s)	356, 429, 628, 724, 803, 984, 1042
HpyF3I	CTNAG	6 cut(s)	59, 69, 111, 219, 281, 686
HpySE526I	ACGT	1 cut(s)	740
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	367, 865, 928
Lsp1109I	GCAGC	4 cut(s)	214, 217, 708, 736
MaeI	CTAG	3 cut(s)	147, 927, 1094
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	5 cut(s)	149, 821, 877, 910, 1027
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	313, 350, 968, 1005
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	3 cut(s)	243, 712, 870
MlsI	TGGCCA	2 cut(s)	311, 484
MluCI	AATT	3 cut(s)	81, 756, 906
MluNI	TGGCCA	2 cut(s)	311, 484
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	31, 108, 400, 511, 663, 722
Mox20I	TGGCCA	2 cut(s)	311, 484
MscI	TGGCCA	2 cut(s)	311, 484
MseI	TTAA	3 cut(s)	587, 786, 1098
MslI	CAYNNNNRTG	4 cut(s)	42, 572, 638, 699
Msp20I	TGGCCA	2 cut(s)	311, 484
MspR9I	CCNGG	2 cut(s)	257, 366
MunI	CAATTG	1 cut(s)	906
MvaI	CCWGG	2 cut(s)	257, 366
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	1 cut(s)	277
NlaIV	GGNNCC	5 cut(s)	6, 129, 363, 470, 780
NmuCI	GTSAC	4 cut(s)	149, 821, 877, 910
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	553
PflMI	CCANNNNNTGG	2 cut(s)	418, 480
PkrI	GCNGC	4 cut(s)	229, 232, 723, 726
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PscI	ACATGT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	255, 364
PspGI	CCWGG	2 cut(s)	255, 364
PspN4I	GGNNCC	5 cut(s)	6, 129, 363, 470, 780
PspPI	GGNCC	5 cut(s)	4, 127, 409, 577, 947
PstI	CTGCAG	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	989
RsaNI	GTAC	1 cut(s)	988
RseI	CAYNNNNRTG	4 cut(s)	42, 572, 638, 699
SaqAI	TTAA	3 cut(s)	587, 786, 1098
SatI	GCNGC	4 cut(s)	228, 231, 722, 725
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	5 cut(s)	4, 127, 409, 577, 947
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	257, 366
SduI	GDGCHC	3 cut(s)	243, 712, 870
SfcI	CTRYAG	2 cut(s)	513, 722
SinI	GGWCC	2 cut(s)	409, 947
SmiMI	CAYNNNNRTG	4 cut(s)	42, 572, 638, 699
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	1093
Sse9I	AATT	3 cut(s)	81, 756, 906
SsiI	CCGC	1 cut(s)	898
SspMI	CTAG	3 cut(s)	147, 927, 1094
StyD4I	CCNGG	2 cut(s)	255, 364
StyI	CCWWGG	4 cut(s)	312, 573, 580, 1056
TaaI	ACNGT	6 cut(s)	373, 514, 546, 625, 718, 1016
TaiI	ACGT	1 cut(s)	743
TasI	AATT	3 cut(s)	81, 756, 906
TatI	WGTACW	1 cut(s)	987
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	587, 786, 1098
Tru9I	TTAA	3 cut(s)	587, 786, 1098
TscAI	CASTG	4 cut(s)	248, 511, 723, 882
TseFI	GTSAC	4 cut(s)	149, 821, 877, 910
TseI	GCWGC	4 cut(s)	227, 230, 721, 724
Tsp45I	GTSAC	4 cut(s)	149, 821, 877, 910
TspDTI	ATGAA	5 cut(s)	213, 313, 656, 984, 992
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	4 cut(s)	248, 511, 723, 882
Van91I	CCANNNNNTGG	2 cut(s)	418, 480
VpaK11BI	GGWCC	2 cut(s)	409, 947
XapI	RAATTY	1 cut(s)	756
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	3 cut(s)	147, 927, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.