Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Forward (+)

43965418 .. 43967577

Gene Structure 2160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCAGGTGGTAAATCATGGGATTGATCTGAGTCTGCTTGAGAGTATAGAGAAGGTAGCCCAGGATTTCTTCATGCTACCTTTGGCAGAGAAACAGAAGTATCCAATGGCTCCTGGTACTGTTCAAGGATATGGACAAGCTTTTGTTTTATCAGAGGACCAAAAACTTGATTGGTGCAACATGTTTGCTCTTGGGGTTGAACCTAAGTTTATACGGAACCCGTTACTATGGCCAACAAAACCGGAAAAGTTCAGTGAAACTGTAGAGGTCTATTCAAAAGAAGTGAGGAAACTATGCCAGAATCTGTTGAAGTACATAGCCATGAGCCTCGGCTTGCAAGGTGACATCTTTGAAAAGATGTTTGGGGAGGCTGTTCAAGCCATAAGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTTGTTTTAGGCCTAAGCCCACATTCAGATGGGAGCGCCCTAACAGTTCTGCAGCAAGGGAAGGACAACTCAGTAGGACTTCAAATCCTCAAAGATGACAGATGGGTACCTGTTCAGCCCATTCCCAATGCTCTTGTGATCAACATTGGGGACACCATAGAAGTTCTTACAAATGGGATCTATAAGAGTGTGGAGCATAGAGCAGTGACTCACAAGGTGAAAGATAGGCTTTCAATCGTCACATTTTATGCTCCTAGCTATGAGGTAGAGCTTGGACCTGTGCAAGAACTGCTGGATGAAAACACTCCATGCAAGTATAGAAGATACAATCATGGAGAGTACAGCAAACACTATGTTACAAACAAGTTGCAAGGGAAAAAAACACTCGAGTTTGCCAAGATTCAAAGCAGAAGTTCAAACCAAGAAGAACCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

285

Amino Acids

32.38

Weight (kDa)

6.33

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 79	2.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	126 - 225	1.6e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	526
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	637
AfaI	GTAC	4 cut(s)	118, 314, 528, 761
AflIII	ACRYGT	1 cut(s)	180
AjnI	CCWGG	2 cut(s)	60, 112
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	3 cut(s)	140, 678, 691
AluI	AGCT	3 cut(s)	140, 678, 691
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	806
AoxI	GGCC	2 cut(s)	230, 430
ApeKI	GCWGC	1 cut(s)	472
Asp718I	GGTACC	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	157, 695
AsuHPI	GGTGA	2 cut(s)	353, 649
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	2 cut(s)	157, 695
BaeI	ACNNNNGTAYC	2 cut(s)	83, 116
BalI	TGGCCA	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	443, 516
BciT130I	CCWGG	2 cut(s)	62, 114
BciVI	GTATCC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	558
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	2 cut(s)	261, 470
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
Bme1390I	CCNGG	2 cut(s)	62, 114
Bme18I	GGWCC	2 cut(s)	157, 695
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	157, 695
BmiI	GGNNCC	3 cut(s)	111, 218, 528
BmrFI	CCNGG	2 cut(s)	62, 114
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	60, 328
BsaWI	WCCGGW	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	62, 114
BseDI	CCNNGG	2 cut(s)	60, 328
BseGI	GGATG	2 cut(s)	393, 721
BseMII	CTCAG	2 cut(s)	20, 504
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	2 cut(s)	232, 432
BshNI	GGYRCC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	806
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	232, 432
BsoBI	CYCGRG	1 cut(s)	806
Bsp143I	GATC	3 cut(s)	25, 558, 597
BspANI	GGCC	2 cut(s)	232, 432
BspCNI	CTCAG	2 cut(s)	21, 503
BspLI	GGNNCC	3 cut(s)	111, 218, 528
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	60, 328
BssMI	GATC	3 cut(s)	25, 558, 597
Bst2UI	CCWGG	2 cut(s)	62, 114
Bst4CI	ACNGT	3 cut(s)	121, 262, 466
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	4 cut(s)	29, 204, 434, 490
BstF5I	GGATG	2 cut(s)	393, 721
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	3 cut(s)	28, 561, 600
BstMBI	GATC	3 cut(s)	25, 558, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 709
BstNI	CCWGG	2 cut(s)	62, 114
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	60, 112
BstSFI	CTRYAG	2 cut(s)	261, 470
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	232, 432
BtsCI	GGATG	2 cut(s)	393, 721
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	259, 630
Cac8I	GCNNGC	1 cut(s)	335
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	157, 695
Csp6I	GTAC	4 cut(s)	117, 313, 527, 760
CviAII	CATG	8 cut(s)	17, 73, 181, 322, 405, 729, 752, 853
CviQI	GTAC	4 cut(s)	117, 313, 527, 760
DdeI	CTNAG	4 cut(s)	29, 204, 434, 490
DpnI	GATC	3 cut(s)	27, 560, 599
DpnII	GATC	3 cut(s)	25, 558, 597
DraIII	CACNNNGTG	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	157, 695
Eco88I	CYCGRG	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	60, 112
FaeI	CATG	8 cut(s)	20, 76, 184, 325, 408, 732, 755, 856
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	8 cut(s)	16, 72, 180, 321, 404, 728, 751, 852
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	2 cut(s)	400, 728
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	232, 432
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	8 cut(s)	20, 76, 184, 325, 408, 732, 755, 856
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	4 cut(s)	31, 301, 628, 820
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	353, 649
Hpy188I	TCNGA	3 cut(s)	30, 154, 448
Hpy188III	TCNNGA	1 cut(s)	411
HpyAV	CCTTC	2 cut(s)	46, 475
HpyCH4III	ACNGT	3 cut(s)	121, 262, 466
HpyCH4V	TGCA	7 cut(s)	4, 177, 337, 472, 703, 732, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 709
HpyF3I	CTNAG	4 cut(s)	29, 204, 434, 490
Hsp92II	CATG	8 cut(s)	20, 76, 184, 325, 408, 732, 755, 856
HspAI	GCGC	1 cut(s)	456
KpnI	GGTACC	1 cut(s)	530
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	25, 558, 597
LmnI	GCTCC	4 cut(s)	115, 453, 613, 676
Lsp1109I	GCAGC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	675
MaeIII	GTNAC	5 cut(s)	222, 341, 625, 658, 775
MalI	GATC	3 cut(s)	27, 560, 599
MboI	GATC	3 cut(s)	25, 558, 597
MboII	GAAGA	3 cut(s)	61, 753, 857
MflI	RGATCY	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	40, 622
MnlI	CCTC	8 cut(s)	148, 259, 279, 338, 361, 411, 518, 676
Mox20I	TGGCCA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	232
MslI	CAYNNNNRTG	3 cut(s)	320, 386, 447
Msp20I	TGGCCA	1 cut(s)	232
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	62, 114
MvaI	CCWGG	2 cut(s)	62, 114
MwoI	GCNNNNNNNGC	2 cut(s)	377, 709
NdeII	GATC	3 cut(s)	25, 558, 597
NlaIII	CATG	8 cut(s)	20, 76, 184, 325, 408, 732, 755, 856
NlaIV	GGNNCC	3 cut(s)	111, 218, 528
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	341, 625, 658
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	432
PciI	ACATGT	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	301, 820
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	2 cut(s)	39, 622
PpsI	GAGTC	2 cut(s)	39, 622
PscI	ACATGT	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	60, 112
PspGI	CCWGG	2 cut(s)	60, 112
PspN4I	GGNNCC	3 cut(s)	111, 218, 528
PspPI	GGNCC	2 cut(s)	157, 695
PspXI	VCTCGAGB	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	597
RsaI	GTAC	4 cut(s)	118, 314, 528, 761
RsaNI	GTAC	4 cut(s)	117, 313, 527, 760
RseI	CAYNNNNRTG	3 cut(s)	320, 386, 447
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	3 cut(s)	25, 558, 597
Sau96I	GGNCC	2 cut(s)	157, 695
SchI	GAGTC	2 cut(s)	40, 622
ScrFI	CCNGG	2 cut(s)	62, 114
SfcI	CTRYAG	2 cut(s)	261, 470
Sfr274I	CTCGAG	1 cut(s)	806
SinI	GGWCC	2 cut(s)	157, 695
SlaI	CTCGAG	1 cut(s)	806
SmiMI	CAYNNNNRTG	3 cut(s)	320, 386, 447
SmlI	CTYRAG	2 cut(s)	38, 806
SmoI	CTYRAG	2 cut(s)	38, 806
SseBI	AGGCCT	1 cut(s)	432
SspMI	CTAG	1 cut(s)	675
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	60, 112
TaaI	ACNGT	3 cut(s)	121, 262, 466
TaqI	TCGA	1 cut(s)	807
TatI	WGTACW	2 cut(s)	312, 759
TfiI	GAWTC	2 cut(s)	301, 820
TscAI	CASTG	2 cut(s)	259, 630
TseFI	GTSAC	3 cut(s)	341, 625, 658
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	3 cut(s)	341, 625, 658
TspDTI	ATGAA	3 cut(s)	61, 404, 732
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	259, 630
VpaK11BI	GGWCC	2 cut(s)	157, 695
XceI	RCATGY	1 cut(s)	184
XhoI	CTCGAG	1 cut(s)	806
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.