Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Reverse (-)

30685180 .. 30686418

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0174700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCTGGCAGACGTAGCAGACTATGGTTTCATGAGGATGTTTATAGGCTCAGAAAAAGTTACAGGCATCAGAGTAGAGCTACCAAGAGAATATGAGATATGCTTGAGTACTGAATGCTTTAAAAAGATGAAAAATCTTCAACTTTTTATAAACATTAACGCACGCTTCTCTGGAGAGGTTAATTATCTCCCAAACAAGTTGAGGTTCCTTGATTGGCCTAGATTCCCAGCTCAATCTTTGCCATCTGACTTTAATACACAAAAACTAGTCAAGCTCAATATCGCAAACAGTCGCATCTCACGACTCGGGCAAATATTCAAGAATTTGCAGAACTTGAAATCTCTTAGTTTTGAAAGTTGCAAGTTACTAACAGAATTCCCCGACTTGTCTGGAATGCTTCCGAAATTAGAGAGGTTGAATTTAAGGCTCTGTACAAGTTTAGCTGAGTTGCATCCTTCTGTTGGATTCCTTGATAAGCTTGTCCACTTTGATCTCAGCAATTGCTATAACCTTAAGATGTTTCCAAACATAGTCAACATGAAATCTCTTGAAGTCATTAGTTTGAGTGGCTGTCAGAGGCTTGAGAACTTCCCAGAAATTGTGGGAAGAATGGAATCCTTAATAGTCATGGATATGTCTGGAACTGCCATCAAAGAAGTGCCTTCATCAGTTGGACATTATCTCTTTAAGCTTGGAACTCTGTCTTTACAAAATTGTGAAAACCTCACGAATCTGCCGCTTAGCATTTATCAGTTGCAAGAGCTATGCGACCTTCGACTCAGAGATTGCCCAAACCTGGTGCTAACTACATTTCCAGATAAGCTGAAATACTGGAAAGTGCCAAGTCCAACGTCTACCTCAAAGATTTCACATTATTACGGCAAGGCAATTTCATCAGAAAGAGAAAGTAACCGTGACGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGATGATGATGATGATGATGATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

327

Amino Acids

37.1

Weight (kDa)

5.2

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	171 - 263	6.3e-08	Leucine-rich repeat region
LRR_13	PF23286	181 - 266	4.2e-10	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	854
AciI	CCGC	1 cut(s)	737
AcsI	RAATTY	3 cut(s)	322, 374, 418
AfaI	GTAC	2 cut(s)	109, 433
AfiI	CCNNNNNNNGG	2 cut(s)	461, 796
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	6 cut(s)	140, 319, 337, 353, 418, 551
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	8 cut(s)	79, 230, 274, 443, 478, 691, 763, 823
AluI	AGCT	8 cut(s)	79, 230, 274, 443, 478, 691, 763, 823
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	215
ApoI	RAATTY	3 cut(s)	322, 374, 418
AsuHPI	GGTGA	6 cut(s)	932, 938, 944, 950, 956, 962
AvaI	CYCGRG	1 cut(s)	305
BccI	CCATC	7 cut(s)	250, 656, 917, 923, 929, 935, 941
BceAI	ACGGC	1 cut(s)	895
BciT130I	CCWGG	1 cut(s)	797
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	219, 266
BfrI	CTTAAG	1 cut(s)	512
BisI	GCNGC	1 cut(s)	737
BlpI	GCTNAGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	738
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	797
BmeT110I	CYCGRG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	3 cut(s)	75, 303, 460
BpmI	CTGGAG	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	740
BpuEI	CTTGAG	2 cut(s)	124, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 796
Bse1I	ACTGG	1 cut(s)	836
BseBI	CCWGG	1 cut(s)	797
BseGI	GGATG	2 cut(s)	42, 451
BseLI	CCNNNNNNNGG	2 cut(s)	461, 796
BseMII	CTCAG	4 cut(s)	63, 435, 508, 793
BseNI	ACTGG	1 cut(s)	836
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	461, 796
BsmI	GAATGC	2 cut(s)	119, 399
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	305
Bsp1407I	TGTACA	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	490
Bsp1720I	GCTNAGC	1 cut(s)	740
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	4 cut(s)	62, 436, 507, 792
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	836
BssMI	GATC	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	3 cut(s)	290, 914, 920
BstAFI	CTTAAG	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	6, 163
BstDEI	CTNAG	6 cut(s)	49, 344, 444, 494, 740, 779
BstF5I	GGATG	2 cut(s)	42, 451
BstKTI	GATC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	795
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	42, 451
Cac8I	GCNNGC	2 cut(s)	6, 163
CciI	TCATGA	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	795
Csp6I	GTAC	2 cut(s)	108, 432
CviAII	CATG	3 cut(s)	31, 538, 628
CviQI	GTAC	2 cut(s)	108, 432
DdeI	CTNAG	6 cut(s)	49, 344, 444, 494, 740, 779
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
DraI	TTTAAA	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	795
FaeI	CATG	3 cut(s)	34, 541, 631
FatI	CATG	3 cut(s)	30, 537, 627
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	1 cut(s)	737
FokI	GGATG	2 cut(s)	49, 438
Fsp4HI	GCNGC	1 cut(s)	737
FspBI	CTAG	2 cut(s)	219, 266
GluI	GCNGC	1 cut(s)	737
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	34, 541, 631
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	2 cut(s)	476, 689
HinfI	GANTC	6 cut(s)	222, 303, 465, 614, 730, 777
HphI	GGTGA	6 cut(s)	932, 938, 944, 950, 956, 962
Hpy166II	GTNNAC	3 cut(s)	484, 535, 855
Hpy188I	TCNGA	7 cut(s)	52, 71, 247, 402, 576, 782, 898
Hpy188III	TCNNGA	9 cut(s)	31, 171, 300, 319, 390, 548, 639, 727, 815
Hpy8I	GTNNAC	3 cut(s)	484, 535, 855
HpyAV	CCTTC	3 cut(s)	465, 672, 782
HpyCH4III	ACNGT	3 cut(s)	290, 914, 920
HpyCH4IV	ACGT	2 cut(s)	12, 851
HpyCH4V	TGCA	4 cut(s)	328, 360, 451, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	6 cut(s)	49, 344, 444, 494, 740, 779
HpySE526I	ACGT	2 cut(s)	12, 851
Hsp92II	CATG	3 cut(s)	34, 541, 631
Kzo9I	GATC	1 cut(s)	490
LweI	GCATC	3 cut(s)	75, 303, 460
MabI	ACCWGGT	1 cut(s)	795
MaeI	CTAG	2 cut(s)	219, 266
MaeII	ACGT	2 cut(s)	12, 851
MaeIII	GTNAC	4 cut(s)	58, 363, 908, 914
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	2 cut(s)	128, 618
MfeI	CAATTG	1 cut(s)	499
MluCI	AATT	9 cut(s)	181, 322, 374, 404, 418, 499, 597, 712, 888
MlyI	GAGTC	2 cut(s)	297, 771
MmeI	TCCRAC	3 cut(s)	442, 652, 872
MnlI	CCTC	7 cut(s)	27, 169, 195, 405, 570, 734, 868
MseI	TTAA	8 cut(s)	120, 156, 180, 252, 422, 513, 620, 687
MslI	CAYNNNNRTG	2 cut(s)	35, 632
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	797
MunI	CAATTG	1 cut(s)	499
Mva1269I	GAATGC	2 cut(s)	119, 399
MvaI	CCWGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	3 cut(s)	34, 541, 631
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	914
PagI	TCATGA	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PctI	GAATGC	2 cut(s)	119, 399
PfeI	GAWTC	4 cut(s)	222, 465, 614, 730
PkrI	GCNGC	1 cut(s)	738
PleI	GAGTC	2 cut(s)	297, 771
PpsI	GAGTC	2 cut(s)	297, 771
PsiI	TTATAA	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	795
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	109, 433
RsaNI	GTAC	2 cut(s)	108, 432
RseI	CAYNNNNRTG	2 cut(s)	35, 632
SaqAI	TTAA	8 cut(s)	120, 156, 180, 252, 422, 513, 620, 687
SatI	GCNGC	1 cut(s)	737
Sau3AI	GATC	1 cut(s)	490
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	2 cut(s)	297, 771
ScrFI	CCNGG	1 cut(s)	797
SexAI	ACCWGGT	1 cut(s)	795
SfaNI	GCATC	3 cut(s)	75, 303, 460
SmiMI	CAYNNNNRTG	2 cut(s)	35, 632
SmlI	CTYRAG	3 cut(s)	103, 512, 581
SmoI	CTYRAG	3 cut(s)	103, 512, 581
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	9 cut(s)	181, 322, 374, 404, 418, 499, 597, 712, 888
SsiI	CCGC	1 cut(s)	737
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	2 cut(s)	219, 266
StyD4I	CCNGG	1 cut(s)	795
TaaI	ACNGT	3 cut(s)	290, 914, 920
TaiI	ACGT	2 cut(s)	15, 854
TaqI	TCGA	1 cut(s)	775
TasI	AATT	9 cut(s)	181, 322, 374, 404, 418, 499, 597, 712, 888
TatI	WGTACW	2 cut(s)	107, 431
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	4 cut(s)	222, 465, 614, 730
Tru1I	TTAA	8 cut(s)	120, 156, 180, 252, 422, 513, 620, 687
Tru9I	TTAA	8 cut(s)	120, 156, 180, 252, 422, 513, 620, 687
TseFI	GTSAC	1 cut(s)	914
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	5 cut(s)	19, 143, 554, 654, 882
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	3 cut(s)	322, 374, 418
XmiI	GTMKAC	1 cut(s)	854
XspI	CTAG	2 cut(s)	219, 266
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.