Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Reverse (-)

14477516 .. 14479676

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1172000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCCCAGAACCCATTCACCCTATCAGGGTTGGTCACATCGATGATGTCCAAGAACTCAGAAAATCCAAGCCTTCCATTATTCCTGAGAGATTTGTGAGGGACATGACTGAGAGGCCAACTCTTGCCACTCCCATGCCATGCTCCACTGACATTCCCACCATCAATTTCTCAAAGCTTGTAAAAGGAACCAAAGATGAAATCAAAACTGAGATTTCCCAACTTGCACATGCCTCTGAGAACTGGGGCTTTTTCCAGGTGGTTAATCATGGGATTGATCTGAGTATACTTGAGAGCATAGAGAAGGTGGCCAAGGAATTTTTCATGCTGCCTTTGGAAGAGAAGAAGAAGTATGCACTGGCTCCCGGGACTGTTCAGGGATATGGCCAGGCTTTTGTGTTATCAGAAGACCAGAAATTAGACTGGTGCAACATGTTTGCTCTTGGGGTTGTACCAAACTTTATAAGAAGCCCCATGTTATGGCCAACAAACCCAGAAAATTTTAGTGAAAGTGTAGAGGTCTATTCAACGGAAGTGAGGAAATTGTGCCAGAATCTGCTGAAATACATAGCCATGAGCCTTGGCTTGAATGGTGATGTGTTTGAAAATATGTTTGGGGAGGCTGTGCAAGCCCTAAGGATGAACTACTACCCTCCCTGTCCAAGACCTGACCTAGTTTTGGGACTAAGTCCACACTCAGATGGAAGTGCCCTCACAGTTTTGCAGCAAGGGAAGGGCAACTCGGTGGGACTTCAAATCCTCAAAGATGACAGATGGGTCCCTGTTAAGCCCATTCCAAATGCACTTGTCATCAACATTGGAGACACCATCGAAGTTCTTACAAATGGGAAATACAAGAGTGTGGAGCATAGAGCAGTGACTCACAAGGAGAAAGACAGGCTTTCAATTGTGACATTTTATGCTCCTAGCTATGAGATAGAGGTTGGCCCAATGGCAGAATTGGTGGATGAAAACAACCCATGCAAGTATAGAAGATACAATCATGGAGAGTACAGTAAACGCTATGTAACAAACAAGTTGCAAGGCAAGAAAACCTTGGAGTTTGCCAGGATTCGAACCAAATCTCGAACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

366

Amino Acids

41.32

Weight (kDa)

7.64

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 163	8.7e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	210 - 309	3.3e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AasI	GACNNNNNNGTC	1 cut(s)	776
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	286
AcoI	YGGCCR	3 cut(s)	309, 385, 482
AcsI	RAATTY	2 cut(s)	317, 499
AfaI	GTAC	2 cut(s)	453, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	28, 480, 679
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	5 cut(s)	528, 589, 605, 755, 906
AjnI	CCWGG	3 cut(s)	255, 387, 1067
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 597, 629
AluBI	AGCT	2 cut(s)	178, 930
AluI	AGCT	2 cut(s)	178, 930
Alw26I	GTCTC	1 cut(s)	816
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	6 cut(s)	3, 116, 309, 385, 482, 946
ApeKI	GCWGC	2 cut(s)	328, 724
ApoI	RAATTY	2 cut(s)	317, 499
Asp700I	GAANNNNTTC	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	4, 778, 947
AsuC2I	CCSGG	2 cut(s)	366, 367
AsuHPI	GGTGA	2 cut(s)	11, 605
AsuII	TTCGAA	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	778
AxyI	CCTNAGG	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	712
BalI	TGGCCA	3 cut(s)	311, 387, 484
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	315, 736
BccI	CCATC	4 cut(s)	170, 695, 768, 836
BciT130I	CCWGG	3 cut(s)	257, 389, 1069
BcnI	CCSGG	2 cut(s)	366, 367
BcoDI	GTCTC	1 cut(s)	816
BfaI	CTAG	2 cut(s)	674, 927
BisI	GCNGC	2 cut(s)	329, 725
BlsI	GCNGC	2 cut(s)	330, 726
Bme1390I	CCNGG	5 cut(s)	257, 366, 367, 389, 1069
Bme18I	GGWCC	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	3 cut(s)	4, 778, 947
BmiI	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
BmrFI	CCNGG	5 cut(s)	257, 366, 367, 389, 1069
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
Bpu14I	TTCGAA	1 cut(s)	1075
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	2 cut(s)	366, 367
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	312, 365, 580, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 480, 679
Bse1I	ACTGG	3 cut(s)	248, 363, 428
Bse21I	CCTNAGG	1 cut(s)	635
BseBI	CCWGG	3 cut(s)	257, 389, 1069
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	4 cut(s)	312, 365, 580, 1056
BseGI	GGATG	2 cut(s)	645, 973
BseLI	CCNNNNNNNGG	3 cut(s)	28, 480, 679
BseMII	CTCAG	7 cut(s)	73, 78, 102, 201, 228, 272, 711
BseNI	ACTGG	3 cut(s)	248, 363, 428
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	315, 736
BshFI	GGCC	6 cut(s)	5, 118, 311, 387, 484, 948
BshVI	ATCGAT	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	5 cut(s)	116, 382, 696, 762, 764
BslI	CCNNNNNNNGG	3 cut(s)	28, 480, 679
BsmAI	GTCTC	1 cut(s)	816
BsmFI	GGGAC	5 cut(s)	116, 382, 696, 762, 764
BsnI	GGCC	6 cut(s)	5, 118, 311, 387, 484, 948
BsoBI	CYCGRG	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	1075
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	1 cut(s)	277
BspANI	GGCC	6 cut(s)	5, 118, 311, 387, 484, 948
BspCNI	CTCAG	7 cut(s)	72, 79, 103, 202, 229, 273, 710
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
BspT104I	TTCGAA	1 cut(s)	1075
BsrI	ACTGG	3 cut(s)	248, 363, 428
BssECI	CCNNGG	4 cut(s)	312, 365, 580, 1056
BssMI	GATC	1 cut(s)	277
BssNAI	GTATAC	1 cut(s)	287
BssT1I	CCWWGG	3 cut(s)	312, 580, 1056
Bst1107I	GTATAC	1 cut(s)	287
Bst2UI	CCWGG	3 cut(s)	257, 389, 1069
Bst4CI	ACNGT	3 cut(s)	373, 718, 1016
Bst6I	CTCTTC	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	1075
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	9 cut(s)	59, 87, 111, 210, 237, 281, 635, 686, 697
BstF5I	GGATG	2 cut(s)	645, 973
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	3 cut(s)	257, 389, 1069
BstNSI	RCATGY	2 cut(s)	233, 436
BstSCI	CCNGG	5 cut(s)	255, 364, 365, 387, 1067
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	315, 736
BstV2I	GAAGAC	1 cut(s)	414
BstZ17I	GTATAC	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	635
BsuRI	GGCC	6 cut(s)	5, 118, 311, 387, 484, 948
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	645, 973
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	3 cut(s)	147, 356, 882
Cac8I	GCNNGC	1 cut(s)	630
CaiI	CAGNNNCTG	1 cut(s)	556
Cfr13I	GGNCC	3 cut(s)	4, 778, 947
Cfr9I	CCCGGG	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	452, 1012
CviQI	GTAC	2 cut(s)	452, 1012
DdeI	CTNAG	9 cut(s)	59, 87, 111, 210, 237, 281, 635, 686, 697
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	776
DseDI	GACNNNNNNGTC	1 cut(s)	776
EaeI	YGGCCR	3 cut(s)	309, 385, 482
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	3 cut(s)	312, 580, 1056
Eco47I	GGWCC	1 cut(s)	778
Eco81I	CCTNAGG	1 cut(s)	635
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	3 cut(s)	255, 387, 1067
EcoT14I	CCWWGG	3 cut(s)	312, 580, 1056
ErhI	CCWWGG	3 cut(s)	312, 580, 1056
FalI	AAGNNNNNCTT	4 cut(s)	885, 917, 1040, 1072
FaqI	GGGAC	5 cut(s)	116, 382, 696, 762, 764
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	329, 725
FokI	GGATG	2 cut(s)	652, 980
Fsp4HI	GCNGC	2 cut(s)	329, 725
FspBI	CTAG	2 cut(s)	674, 927
GluI	GCNGC	2 cut(s)	329, 725
HaeIII	GGCC	6 cut(s)	5, 118, 311, 387, 484, 948
HapII	CCGG	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	553, 880, 1072
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	11, 605
Hpy166II	GTNNAC	3 cut(s)	287, 692, 1019
Hpy188I	TCNGA	5 cut(s)	62, 238, 282, 406, 700
Hpy188III	TCNNGA	2 cut(s)	86, 1086
Hpy8I	GTNNAC	3 cut(s)	287, 692, 1019
HpyAV	CCTTC	3 cut(s)	84, 298, 727
HpyCH4III	ACNGT	3 cut(s)	373, 718, 1016
HpyCH4V	TGCA	8 cut(s)	227, 356, 429, 628, 724, 803, 984, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	9 cut(s)	59, 87, 111, 210, 237, 281, 635, 686, 697
KflI	GGGWCCC	1 cut(s)	778
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	4 cut(s)	149, 367, 865, 928
Lsp1109I	GCAGC	2 cut(s)	315, 736
MaeI	CTAG	2 cut(s)	674, 927
MaeIII	GTNAC	4 cut(s)	35, 877, 910, 1027
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	350, 355, 358, 419, 1005
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	712
MlsI	TGGCCA	3 cut(s)	311, 387, 484
MluCI	AATT	7 cut(s)	166, 317, 416, 499, 542, 906, 959
MluNI	TGGCCA	3 cut(s)	311, 387, 484
MlyI	GAGTC	1 cut(s)	874
Mox20I	TGGCCA	3 cut(s)	311, 387, 484
MroXI	GAANNNNTTC	1 cut(s)	15
MscI	TGGCCA	3 cut(s)	311, 387, 484
MseI	TTAA	2 cut(s)	264, 786
MslI	CAYNNNNRTG	4 cut(s)	42, 134, 572, 699
Msp20I	TGGCCA	3 cut(s)	311, 387, 484
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	5 cut(s)	257, 366, 367, 389, 1069
MunI	CAATTG	1 cut(s)	906
MvaI	CCWGG	3 cut(s)	257, 389, 1069
MwoI	GCNNNNNNNGC	1 cut(s)	629
NciI	CCSGG	2 cut(s)	366, 367
NdeII	GATC	1 cut(s)	277
NlaIV	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
NmuCI	GTSAC	3 cut(s)	35, 877, 910
NspI	RCATGY	2 cut(s)	233, 436
NspV	TTCGAA	1 cut(s)	1075
PciI	ACATGT	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	553, 1072
PflFI	GACNNNGTC	1 cut(s)	687
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	2 cut(s)	330, 726
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
PpuMI	RGGWCCY	1 cut(s)	778
PscI	ACATGT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	3 cut(s)	255, 387, 1067
PspGI	CCWGG	3 cut(s)	255, 387, 1067
PspN4I	GGNNCC	5 cut(s)	6, 190, 363, 779, 780
PspPI	GGNCC	3 cut(s)	4, 778, 947
PspPPI	RGGWCCY	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	556
PsyI	GACNNNGTC	1 cut(s)	687
RsaI	GTAC	2 cut(s)	453, 1013
RsaNI	GTAC	2 cut(s)	452, 1012
RseI	CAYNNNNRTG	4 cut(s)	42, 134, 572, 699
SaqAI	TTAA	2 cut(s)	264, 786
SatI	GCNGC	2 cut(s)	329, 725
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	3 cut(s)	4, 778, 947
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	5 cut(s)	257, 366, 367, 389, 1069
SduI	GDGCHC	1 cut(s)	712
SetI	ASST	9 cut(s)	180, 261, 309, 522, 670, 675, 932, 945, 1058
SfuI	TTCGAA	1 cut(s)	1075
SinI	GGWCC	1 cut(s)	778
SmaI	CCCGGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	4 cut(s)	42, 134, 572, 699
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	7 cut(s)	166, 317, 416, 499, 542, 906, 959
SspMI	CTAG	2 cut(s)	674, 927
StyD4I	CCNGG	5 cut(s)	255, 364, 365, 387, 1067
StyI	CCWWGG	3 cut(s)	312, 580, 1056
TaaI	ACNGT	3 cut(s)	373, 718, 1016
TaqI	TCGA	4 cut(s)	42, 831, 1075, 1087
TasI	AATT	7 cut(s)	166, 317, 416, 499, 542, 906, 959
TatI	WGTACW	1 cut(s)	1011
TfiI	GAWTC	2 cut(s)	553, 1072
Tru1I	TTAA	2 cut(s)	264, 786
Tru9I	TTAA	2 cut(s)	264, 786
TscAI	CASTG	3 cut(s)	154, 363, 882
TseFI	GTSAC	3 cut(s)	35, 877, 910
TseI	GCWGC	2 cut(s)	328, 724
Tsp45I	GTSAC	3 cut(s)	35, 877, 910
TspDTI	ATGAA	4 cut(s)	213, 313, 656, 984
TspGWI	ACGGA	1 cut(s)	545
TspMI	CCCGGG	1 cut(s)	365
TspRI	CASTG	3 cut(s)	154, 363, 882
Tth111I	GACNNNGTC	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	2 cut(s)	317, 499
XceI	RCATGY	2 cut(s)	233, 436
XmaI	CCCGGG	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	2 cut(s)	674, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.