Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014234

Physical Location & Seq

Genomic Coordinates Forward (+)

49843151 .. 49846082

Gene Structure 2932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCCCAATTCCCATTTCTCCTGTTAAGGTTGGTCACATTGATGATGTCCAAGAGCTGAGAAAGACTAAACCCACCATAATTCCAGAAAGATTTGTAAGGGACAAAACTGAGAGACCAACAACTGTAGCCACTGCTATACCATCCTCTAGTGACATTCCCACTATTAATTTCTCTAAGCTTTCCAGTGGAAACACAGATGAACTCAGAACTGAAATCTCTCATCTCACAACCGCTTGCAAGGACTGGGGATTTTTTCAGGTGGTAAATCATGGGATTGATCTGAGTCTGCTTGAGAGTATAGAGAAGGTAGCCCAGGATTTCTTCATGCTACCTTTGGCAGAGAAACAGAAGTATCCAATGGCTCCTGGTACTGTTCAAGGATATGGACAAGCTTTTGTTTTATCAGAGGACCAAAAACTTGATTGGTGCAACATGTTTGCTCTTGGGGTTGAACCTAAGTTTATACGGAACCCAATACTATGGCCAACAAAACCAGAAAAGTTCAGTGAAACTGTAGAGGTCTATTCAAAAGAAGTGAGGAAACTATGCCAGAATCTGTTGAAGTACATAGCCATGAGCCTCGGCTTGCAAGGTGACATCTTTGAAAAGATGTTTGGGGAGGCTGTTCAAGCCATACGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTTGTTTTAGGCCTAAGCCCACATTCAGATGGGAGCGCCCTAACAGTTCTGCAGCAAGGGAAGGACAACTCAGTAGGACTTCAAATCCTCAAAGATGACAGATGGGTACCTGTTCAGCCCATTCCCAATGCTCTTGTGATCAACATTGGGGACACCATAGAAGTGAGAGAATATCTGAAATTAACCTTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

289

Amino Acids

32.42

Weight (kDa)

5.68

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 164	4.1e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 280	2.3e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21420
fragaria_vesca	FvH4_4g17720 FvH4_4g17720
malus_domestica	MD13G1170400.v1.1 MD16G1172000.v1.1
prunus_persica	Prupe.1G138800_v2.0.a1
pyrus_communis	pycom13g14590
rosa_chinensis	RchiOBHm_Chr4g0421691
rosa_laevigata	RLG00000007658
rosa_multiflora	Rmu_sc0004533.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363930
rosa_rugosa	Rorug04G0174700 Rorug04G0174800 Rorug04G0174900
rosa_samantha	Rh4CG248900 Rh4DG232800
rosa_wichuraiana	Rw4G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	781
AccB1I	GGYRCC	1 cut(s)	781
AciI	CCGC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	485
AfaI	GTAC	3 cut(s)	373, 569, 783
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	8 cut(s)	380, 455, 531, 565, 608, 632, 666, 758
AjnI	CCWGG	2 cut(s)	315, 367
AjuI	GAANNNNNNNTTGG	3 cut(s)	33, 600, 632
AluBI	AGCT	3 cut(s)	58, 181, 395
AluI	AGCT	3 cut(s)	58, 181, 395
Alw26I	GTCTC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	3 cut(s)	3, 485, 685
ApeKI	GCWGC	1 cut(s)	727
AseI	ATTAAT	1 cut(s)	168
Asp718I	GGTACC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	2 cut(s)	4, 412
AsuHPI	GGTGA	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BalI	TGGCCA	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	781
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	3 cut(s)	151, 698, 771
BciT130I	CCWGG	2 cut(s)	317, 369
BciVI	GTATCC	1 cut(s)	366
BclI	TGATCA	1 cut(s)	813
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	3 cut(s)	126, 516, 725
BfoI	RGCGCY	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	729
Bme1390I	CCNGG	2 cut(s)	317, 369
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	4, 412
BmiI	GGNNCC	4 cut(s)	6, 366, 473, 783
BmrFI	CCNGG	2 cut(s)	317, 369
BmrI	ACTGGG	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	315, 583
Bse1I	ACTGG	2 cut(s)	186, 251
BseBI	CCWGG	2 cut(s)	317, 369
BseDI	CCNNGG	2 cut(s)	315, 583
BseGI	GGATG	2 cut(s)	143, 648
BseMII	CTCAG	5 cut(s)	50, 102, 220, 275, 759
BseNI	ACTGG	2 cut(s)	186, 251
BseXI	GCAGC	1 cut(s)	739
BshFI	GGCC	3 cut(s)	5, 487, 687
BshNI	GGYRCC	1 cut(s)	781
BslFI	GGGAC	2 cut(s)	116, 839
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	116, 839
BsnI	GGCC	3 cut(s)	5, 487, 687
Bso31I	GGTCTC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	280, 813
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	3 cut(s)	5, 487, 687
BspCNI	CTCAG	5 cut(s)	51, 103, 219, 276, 758
BspLI	GGNNCC	4 cut(s)	6, 366, 473, 783
BspMAI	CTGCAG	1 cut(s)	729
BspT107I	GGYRCC	1 cut(s)	781
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	186, 251
BssECI	CCNNGG	2 cut(s)	315, 583
BssMI	GATC	2 cut(s)	280, 813
Bst2UI	CCWGG	2 cut(s)	317, 369
Bst4CI	ACNGT	4 cut(s)	127, 376, 517, 721
BstC8I	GCNNGC	2 cut(s)	238, 590
BstDEI	CTNAG	8 cut(s)	59, 111, 177, 206, 284, 459, 689, 745
BstF5I	GGATG	2 cut(s)	143, 648
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	2 cut(s)	283, 816
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	280, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstNI	CCWGG	2 cut(s)	317, 369
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	315, 367
BstSFI	CTRYAG	3 cut(s)	126, 516, 725
BstV1I	GCAGC	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	5, 487, 687
BtsCI	GGATG	2 cut(s)	143, 648
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 193, 514
Cac8I	GCNNGC	2 cut(s)	238, 590
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	2 cut(s)	4, 412
Csp6I	GTAC	3 cut(s)	372, 568, 782
CviAII	CATG	5 cut(s)	272, 328, 436, 577, 660
CviQI	GTAC	3 cut(s)	372, 568, 782
DdeI	CTNAG	8 cut(s)	59, 111, 177, 206, 284, 459, 689, 745
DpnI	GATC	2 cut(s)	282, 815
DpnII	GATC	2 cut(s)	280, 813
EaeI	YGGCCR	1 cut(s)	485
Eco147I	AGGCCT	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	315, 367
FaeI	CATG	5 cut(s)	275, 331, 439, 580, 663
FaqI	GGGAC	2 cut(s)	116, 839
FatI	CATG	5 cut(s)	271, 327, 435, 576, 659
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	728
FokI	GGATG	2 cut(s)	130, 655
Fsp4HI	GCNGC	1 cut(s)	728
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	5, 487, 687
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	275, 331, 439, 580, 663
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HindIII	AAGCTT	2 cut(s)	179, 393
HinfI	GANTC	2 cut(s)	286, 556
HphI	GGTGA	1 cut(s)	608
Hpy188I	TCNGA	5 cut(s)	209, 285, 409, 703, 852
Hpy188III	TCNNGA	2 cut(s)	86, 666
HpyAV	CCTTC	2 cut(s)	301, 730
HpyCH4III	ACNGT	4 cut(s)	127, 376, 517, 721
HpyCH4V	TGCA	4 cut(s)	240, 432, 592, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	8 cut(s)	59, 111, 177, 206, 284, 459, 689, 745
Hsp92II	CATG	5 cut(s)	275, 331, 439, 580, 663
HspAI	GCGC	1 cut(s)	711
KpnI	GGTACC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	2 cut(s)	280, 813
LmnI	GCTCC	2 cut(s)	370, 708
Lsp1109I	GCAGC	1 cut(s)	739
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	35, 152, 596
MalI	GATC	2 cut(s)	282, 815
MboI	GATC	2 cut(s)	280, 813
MboII	GAAGA	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	4 cut(s)	9, 81, 169, 854
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	157, 403, 514, 534, 593, 616, 666, 773
Mox20I	TGGCCA	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	3 cut(s)	27, 168, 857
MslI	CAYNNNNRTG	5 cut(s)	42, 575, 641, 702, 836
Msp20I	TGGCCA	1 cut(s)	487
MspR9I	CCNGG	2 cut(s)	317, 369
MvaI	CCWGG	2 cut(s)	317, 369
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	2 cut(s)	280, 813
NlaIII	CATG	5 cut(s)	275, 331, 439, 580, 663
NlaIV	GGNNCC	4 cut(s)	6, 366, 473, 783
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	3 cut(s)	35, 152, 596
NspI	RCATGY	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	687
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	729
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	435
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	315, 367
PspGI	CCWGG	2 cut(s)	315, 367
PspN4I	GGNNCC	4 cut(s)	6, 366, 473, 783
PspPI	GGNCC	2 cut(s)	4, 412
PstI	CTGCAG	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	373, 569, 783
RsaNI	GTAC	3 cut(s)	372, 568, 782
RseI	CAYNNNNRTG	5 cut(s)	42, 575, 641, 702, 836
SaqAI	TTAA	3 cut(s)	27, 168, 857
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	2 cut(s)	280, 813
Sau96I	GGNCC	2 cut(s)	4, 412
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	317, 369
SfcI	CTRYAG	3 cut(s)	126, 516, 725
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	5 cut(s)	42, 575, 641, 702, 836
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	4 cut(s)	9, 81, 169, 854
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	315, 367
TaaI	ACNGT	4 cut(s)	127, 376, 517, 721
TasI	AATT	4 cut(s)	9, 81, 169, 854
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	3 cut(s)	27, 168, 857
Tru9I	TTAA	3 cut(s)	27, 168, 857
TscAI	CASTG	3 cut(s)	139, 193, 514
TseFI	GTSAC	3 cut(s)	35, 152, 596
TseI	GCWGC	1 cut(s)	727
Tsp45I	GTSAC	3 cut(s)	35, 152, 596
TspDTI	ATGAA	3 cut(s)	216, 316, 659
TspGWI	ACGGA	2 cut(s)	484, 655
TspRI	CASTG	3 cut(s)	139, 193, 514
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	168
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.