Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013241

Physical Location & Seq

Genomic Coordinates Reverse (-)

14259841 .. 14261106

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1173600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTCACTGTGCTTCTCCTCCCTTGTATTCAATCTCCATCCCGCAAAGAACCAAAGCTTCATATCCCGTTTCTCTTCTCAGTTCACCCACCAAACCAGCAAGGTAAGCTCTGTTCTTTCTGCTTTTTCACCATCTTGTCCGTTAAACTTATCTGAAGTTTTGAATTTTAGAACAGATATATTGAAACCCATATCAGCTACATCGAACCCAGTTGCTGAAATCACCAATCCACCATCGTTCCGCGGCAAAAACCCAAAAGACATCAACATTTTGGTGGTGGGTGCAACTGGGTACATTGGGAAATTTGTAGTTAAGGAGTTGGTTAACAGAGAGTTCAATGTTATAGCCATTGCTAGGGAGAATAGTGGAATTCGGGGTAAAGTTAGCAAGGATGAGACTCTGAAAGAGTTGAAAGGTGCAAATGTGTGCTTTTCGGATGTGACCGATTTGGGTGTTTTCGAGAAATGTTTGGAAGATTTGGGGATTTCGATTGATGTTGTTGTTTCATGCCTTGCTAGCCGTTCTGGGGGTGTGAAGGACTCTTGGAAGATTGATTACGAGGCTACGAAAAACAGTCTTGTCGCCAGTAGGAAGCGTGGGGCTTCACATTTTGTGTTGCTTTCTGCAATTTGTGTGCAGAAGCCCCTCCTTGAGTTCCAGCGTGCAAAGCTGAAATTCGAGTCAGAGTTAATCAAAGAAGCAGAGGAGGATAATGGGTTTAGTTATAGCATTGTAAGGCCGACGGCCTTTTTTAAGAGCTTGGGTGGTCAGGTTGAGTTGGTGAAAGATGGCAAGCCTTATGTGATGTTTGGAGATGGGAAGTTGTGTGCTTGCAAGCCAATCAGCGAGGCAGATTTGGCTTCATTTATTGCGGATTGTGTGTTGAGTGAGAACAAGATTAACCAGATTTTGCCTATCGGAGGACCAGGTAAGGCATTGACGCCCTTGGAGCAAGGGGAGTTGCTGTTTAGGCTTGTGGGAAGGGATCCCAAGTTCTTGAAGGTGCCCATTGAAATTATGGACTTTGCTATTGGGGTTCTCGATTTCCTTGTAAAGGTATTTCCTTCAATGGAAGATACTGCTGAGTTCGGGAAGATTGGAAGGTATTATGCAGCTGAGAGTATGTTGGTTTTGGATCCTGAGACCGGAGAATACAATGCTGAGAAAACGCCGAGTTATGGCAAAGACACATTGGAAGAATTCTTTGAGACTGTGCTGAGGGAGGGGATGGCCGGTCAGGAATTAGGCGAACAAACGATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0051744 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

422

Amino Acids

46.2

Weight (kDa)

5.47

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	89 - 401	2.6e-13	NmrA-like family
Epimerase	PF01370	90 - 213	3.7e-11	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	91 - 212	3.9e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	94 - 295	6e-18	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18660
fragaria_vesca	FvH4_4g17240
malus_domestica	MD13G1173600.v1.1
prunus_persica	Prupe.1G141800_v2.0.a1
pyrus_communis	pycom16g14670
rosa_chinensis	RchiOBHm_Chr4g0421151
rosa_laevigata	RLG00000007711
rosa_multiflora	Rmu_co8498633.1_g000001 Rmu_sc0009290.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363440
rosa_rugosa	Rorug04G0170000 Rorug04G0170100 Rorug04G0170200
rosa_samantha	Rh4AG229600 Rh4BG232300 Rh4CG243900 Rh4DG228000
rosa_wichuraiana	Rw4G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1003
AccII	CGCG	1 cut(s)	243
AciI	CCGC	4 cut(s)	42, 241, 243, 872
AclWI	GGATC	4 cut(s)	980, 993, 1130, 1143
AcoI	YGGCCR	1 cut(s)	1230
AcsI	RAATTY	5 cut(s)	163, 302, 369, 674, 1199
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	941
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	6 cut(s)	354, 526, 920, 1054, 1145, 1178
AgsI	TTSAA	8 cut(s)	31, 163, 184, 337, 412, 1000, 1013, 1068
AjnI	CCWGG	1 cut(s)	925
AloI	GAACNNNNNNTCC	2 cut(s)	977, 1009
AluBI	AGCT	6 cut(s)	57, 108, 197, 670, 759, 1115
AluI	AGCT	6 cut(s)	57, 108, 197, 670, 759, 1115
Alw26I	GTCTC	3 cut(s)	389, 1136, 1202
AlwI	GGATC	4 cut(s)	980, 993, 1130, 1143
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	737, 744, 1230
ApeKI	GCWGC	1 cut(s)	1112
ApoI	RAATTY	5 cut(s)	163, 302, 369, 674, 1199
AspS9I	GGNCC	1 cut(s)	923
AsuHPI	GGTGA	4 cut(s)	76, 120, 214, 793
AsuNHI	GCTAGC	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	1008
BamHI	GGATCC	2 cut(s)	985, 1135
BanI	GGYRCC	1 cut(s)	1003
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbvCI	CCTCAGC	1 cut(s)	1217
BbvI	GCAGC	1 cut(s)	1124
BccI	CCATC	6 cut(s)	45, 139, 241, 782, 809, 1222
BceAI	ACGGC	2 cut(s)	504, 759
BciT130I	CCWGG	1 cut(s)	927
BcoDI	GTCTC	3 cut(s)	389, 1136, 1202
BfaI	CTAG	2 cut(s)	354, 516
BisI	GCNGC	2 cut(s)	244, 1113
BlsI	GCNGC	2 cut(s)	245, 1114
Bme1390I	CCNGG	1 cut(s)	927
Bme18I	GGWCC	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	3 cut(s)	987, 1005, 1137
BmrFI	CCNGG	1 cut(s)	927
BmrI	ACTGGG	2 cut(s)	203, 297
BmtI	GCTAGC	1 cut(s)	519
BmuI	ACTGGG	2 cut(s)	203, 297
Bpu10I	CCTNAGC	1 cut(s)	1217
BpuEI	CTTGAG	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	1136
BsaJI	CCNNGG	2 cut(s)	241, 945
BsaWI	WCCGGW	1 cut(s)	1145
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	6 cut(s)	354, 526, 920, 1054, 1145, 1178
Bse118I	RCCGGY	1 cut(s)	1232
Bse1I	ACTGG	3 cut(s)	209, 292, 585
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	2 cut(s)	241, 945
BseGI	GGATG	4 cut(s)	37, 397, 442, 1233
BseLI	CCNNNNNNNGG	6 cut(s)	354, 526, 920, 1054, 1145, 1178
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	6 cut(s)	92, 1074, 1107, 1131, 1152, 1208
BseNI	ACTGG	3 cut(s)	209, 292, 585
BseRI	GAGGAG	2 cut(s)	7, 719
BseSI	GKGCMC	1 cut(s)	1008
BseXI	GCAGC	1 cut(s)	1124
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	739, 746, 1232
BshNI	GGYRCC	1 cut(s)	1003
BsiSI	CCGG	2 cut(s)	1146, 1233
BslI	CCNNNNNNNGG	6 cut(s)	354, 526, 920, 1054, 1145, 1178
BsmAI	GTCTC	3 cut(s)	389, 1136, 1202
BsnI	GGCC	3 cut(s)	739, 746, 1232
Bso31I	GGTCTC	1 cut(s)	1136
Bsp1286I	GDGCHC	1 cut(s)	1008
Bsp143I	GATC	2 cut(s)	985, 1135
BspACI	CCGC	4 cut(s)	42, 241, 243, 872
BspANI	GGCC	3 cut(s)	739, 746, 1232
BspCNI	CTCAG	6 cut(s)	91, 1075, 1108, 1132, 1153, 1209
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	987, 1005, 1137
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	4 cut(s)	980, 993, 1130, 1143
BspT107I	GGYRCC	1 cut(s)	1003
BspTNI	GGTCTC	1 cut(s)	1136
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	1232
BsrI	ACTGG	3 cut(s)	209, 292, 585
BssAI	RCCGGY	1 cut(s)	1232
BssECI	CCNNGG	2 cut(s)	241, 945
BssMI	GATC	2 cut(s)	985, 1135
BssNI	GRCGYC	1 cut(s)	941
BssT1I	CCWWGG	1 cut(s)	945
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	3 cut(s)	9, 575, 1213
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	941
BstC8I	GCNNGC	5 cut(s)	517, 663, 794, 832, 836
BstDEI	CTNAG	6 cut(s)	78, 1083, 1116, 1140, 1161, 1217
BstDSI	CCRYGG	1 cut(s)	241
BstENI	CCTNNNNNAGG	2 cut(s)	918, 1052
BstF5I	GGATG	4 cut(s)	37, 397, 442, 1233
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	988, 1138
BstMAI	GTCTC	3 cut(s)	389, 1136, 1202
BstMBI	GATC	2 cut(s)	985, 1135
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 516, 667, 857, 949, 970
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	925
BstSLI	GKGCMC	1 cut(s)	1008
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	1124
BstX2I	RGATCY	2 cut(s)	985, 1135
BstYI	RGATCY	2 cut(s)	985, 1135
BsuRI	GGCC	3 cut(s)	739, 746, 1232
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	37, 397, 442, 1233
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	5 cut(s)	517, 663, 794, 832, 836
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	1232
Cfr13I	GGNCC	1 cut(s)	923
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	949
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	1 cut(s)	507
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	6 cut(s)	78, 1083, 1116, 1140, 1161, 1217
DpnI	GATC	2 cut(s)	987, 1137
DpnII	GATC	2 cut(s)	985, 1135
EaeI	YGGCCR	1 cut(s)	1230
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	945
Eco31I	GGTCTC	1 cut(s)	1136
Eco47I	GGWCC	1 cut(s)	923
Eco57I	CTGAAG	1 cut(s)	174
EcoNI	CCTNNNNNAGG	2 cut(s)	918, 1052
EcoRI	GAATTC	2 cut(s)	369, 1199
EcoRII	CCWGG	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	1 cut(s)	510
FatI	CATG	1 cut(s)	506
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	244, 1113
FokI	GGATG	4 cut(s)	24, 404, 449, 1240
Fsp4HI	GCNGC	2 cut(s)	244, 1113
FspBI	CTAG	2 cut(s)	354, 516
GluI	GCNGC	2 cut(s)	244, 1113
HaeIII	GGCC	3 cut(s)	739, 746, 1232
HapII	CCGG	2 cut(s)	1146, 1233
HgaI	GACGC	1 cut(s)	949
Hin1I	GRCGYC	1 cut(s)	941
Hin1II	CATG	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	3 cut(s)	397, 539, 680
HpaI	GTTAAC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	1146, 1233
HphI	GGTGA	4 cut(s)	76, 120, 214, 793
Hpy166II	GTNNAC	2 cut(s)	84, 325
Hpy188I	TCNGA	5 cut(s)	154, 402, 436, 685, 920
Hpy188III	TCNNGA	6 cut(s)	460, 997, 1040, 1090, 1139, 1238
Hpy8I	GTNNAC	2 cut(s)	84, 325
Hpy99I	CGWCG	1 cut(s)	745
HpyAV	CCTTC	5 cut(s)	529, 975, 994, 1074, 1095
HpyCH4III	ACNGT	3 cut(s)	9, 575, 1213
HpyCH4V	TGCA	7 cut(s)	284, 419, 626, 637, 665, 834, 1112
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 516, 667, 857, 949, 970
HpyF3I	CTNAG	6 cut(s)	78, 1083, 1116, 1140, 1161, 1217
Hsp92I	GRCGYC	1 cut(s)	941
Hsp92II	CATG	1 cut(s)	510
KspAI	GTTAAC	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	985, 1135
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	1 cut(s)	1124
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	2 cut(s)	354, 516
MaeIII	GTNAC	2 cut(s)	3, 439
MalI	GATC	2 cut(s)	987, 1137
MboI	GATC	2 cut(s)	985, 1135
MboII	GAAGA	6 cut(s)	66, 485, 559, 1085, 1105, 1208
MflI	RGATCY	2 cut(s)	985, 1135
MhlI	GDGCHC	1 cut(s)	1008
MluCI	AATT	8 cut(s)	163, 302, 369, 627, 674, 1014, 1199, 1241
MlyI	GAGTC	3 cut(s)	391, 533, 689
MnlI	CCTC	9 cut(s)	28, 553, 656, 697, 700, 841, 914, 1212, 1216
MseI	TTAA	6 cut(s)	143, 312, 324, 689, 753, 900
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	243, 1115
MspI	CCGG	2 cut(s)	1146, 1233
MspR9I	CCNGG	1 cut(s)	927
MvaI	CCWGG	1 cut(s)	927
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	6 cut(s)	105, 516, 667, 857, 949, 970
NdeII	GATC	2 cut(s)	985, 1135
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	1 cut(s)	510
NlaIV	GGNNCC	3 cut(s)	987, 1005, 1137
NmeAIII	GCCGAG	1 cut(s)	1197
NmuCI	GTSAC	2 cut(s)	3, 439
PkrI	GCNGC	2 cut(s)	245, 1114
PleI	GAGTC	3 cut(s)	391, 533, 688
PpsI	GAGTC	3 cut(s)	391, 533, 688
Psp6I	CCWGG	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	3 cut(s)	987, 1005, 1137
PspPI	GGNCC	1 cut(s)	923
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	985, 1135
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	272
SacII	CCGCGG	1 cut(s)	244
SaqAI	TTAA	6 cut(s)	143, 312, 324, 689, 753, 900
SatI	GCNGC	2 cut(s)	244, 1113
Sau3AI	GATC	2 cut(s)	985, 1135
Sau96I	GGNCC	1 cut(s)	923
SchI	GAGTC	3 cut(s)	391, 533, 689
ScrFI	CCNGG	1 cut(s)	927
SduI	GDGCHC	1 cut(s)	1008
SexAI	ACCWGGT	1 cut(s)	925
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	8 cut(s)	163, 302, 369, 627, 674, 1014, 1199, 1241
SsiI	CCGC	4 cut(s)	42, 241, 243, 872
SspMI	CTAG	2 cut(s)	354, 516
StyD4I	CCNGG	1 cut(s)	925
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	3 cut(s)	9, 575, 1213
TaqI	TCGA	5 cut(s)	203, 459, 488, 678, 1041
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	8 cut(s)	163, 302, 369, 627, 674, 1014, 1199, 1241
TauI	GCSGC	1 cut(s)	246
Tru1I	TTAA	6 cut(s)	143, 312, 324, 689, 753, 900
Tru9I	TTAA	6 cut(s)	143, 312, 324, 689, 753, 900
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	3, 439
TseI	GCWGC	1 cut(s)	1112
Tsp45I	GTSAC	2 cut(s)	3, 439
TspDTI	ATGAA	3 cut(s)	49, 495, 852
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	923
XagI	CCTNNNNNAGG	2 cut(s)	918, 1052
XapI	RAATTY	5 cut(s)	163, 302, 369, 674, 1199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1015
XspI	CTAG	2 cut(s)	354, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.