Rroxscaffold_5G00363440

Divinyl chlorophyllide a 8-vinyl-reductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
44672003 .. 44673268
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363440.1

Sequence Viewer

Length: 1266 bp
ATGTCACTGTGCTTCTCCTCCACCGCATTCAATCTTCACTCAGCAAAAAACCAGAGCTTCTTAACGCGTTTCTCTTCTCGCTTCACCAACCCAACTAAGGTACCCTCTTCTCTCTTTACCGGGTTTCCATCATCTCCGTTAAGCTTATCTGAAGTCGTTAAGTTAAGCAAAGAGAGACTAAAACCCATTTCGGCTTCAACGACCCCAACTGTTGAAACGACCGTTACACCTTCATTCAGGAACAAAAGTCCCAAAGACATTAACGTTTTGGTTGTGGGTGCAACTGGGTACATTGGAAAGTTTGTGGTTAAGGAGTTAGTGGATAGAGAGTTCAATGTTATAGCCATTGCTAGGGAGAAGAGTGGGATTAGAGGTAAGTTTAGCAAGGATGAGACTTTAAACCAGTTGAAAGGAGCCAATGTGTGCTTTTCAGATGTGACCGATTTGGATAGTTTGGAGAAATCTATAGAGGAATTGGGTGTTCCAATTGATGTAGTTGTTTCTTGCCTTGCTAGCCGTAGTGGTGGTGTGAAGGATTCTTGGAAGATAGACTATGAGGCAACAAAGAACAGTCTTGTTGCCGGTAGGAATCGTGGGGCTTCACATTTTGTGTTGCTTTTCTGCAATATGTGTGTGCAGAAGCCTCTTCTTGAATTCCAGCGCGCAAAGCTGAAGTTCGAGGATGAGTTGATCAAGGAAGCTAAGGAGGACAGTGGTTTCAGTTATAGTATTGTGAGGCCAACTGCATTCTTTAAGAGCTTGGGGGTCAGGGTTGAGTTGGTGAAAGATGGGAAGCCGTATGTGATGTTTGGGGATGGGAAGTTGTGTGCTTGCAAGCCGATTAGTGAGGCGGATTTGGCTTCGTTTATTGCTGATTGTGTGTTGAGTGAAAATAAGATTAACCAGGTTTTGCCTATTGGTGGACCGGGGAAGGCATTGACACCAATGGAGCAAGGGGAGTTGCTGTTTAGACTTGTGGGGAGGGAACCCAAGTTCTTGAAAGTGCCAATTGAGATAATGGACTTTGCTATTGGGATGCTTGATTTCCTTGTAAAGATATTTCCTTCAATGGAAGACACAGCCGAGTTCGGAAAGATTGGAAGGTATTATGCGGCTGAGAGTATGTTGGTTTTGGATCCTGAGACCGGAGAATATAGTGCTGAGAAAACACCAAGTTATGGCAAAGACACGTTGGAAGACTTCTTCCAGACTGTGCTGAGAGAGGGGATGGCTGGCCAGGAATTGGGGGAACAAACAATTTTCTGA

Protein Analysis

421

Amino Acids

46.38

Weight (kDa)

6.0

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 88 - 378 3.7e-13 NmrA-like family
Epimerase PF01370 89 - 190 2.9e-10 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 93 - 295 4.4e-16 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013241)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 2 cut(s) 1178, 1243
AccII CGCG 2 cut(s) 67, 663
AciI CCGC 3 cut(s) 24, 851, 1112
AclI AACGTT 1 cut(s) 264
AclWI GGATC 2 cut(s) 1130, 1143
AcoI YGGCCR 1 cut(s) 1234
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 2 cut(s) 171, 692
AfaI GTAC 2 cut(s) 102, 290
AfiI CCNNNNNNNGG 6 cut(s) 97, 351, 920, 1145, 1178, 1243
AflIII ACRYGT 2 cut(s) 65, 1188
AgsI TTSAA 8 cut(s) 31, 198, 215, 334, 409, 653, 1000, 1068
AjnI CCWGG 2 cut(s) 903, 1236
AloI GAACNNNNNNTCC 4 cut(s) 314, 346, 977, 1009
AluBI AGCT 5 cut(s) 57, 144, 670, 701, 759
AluI AGCT 5 cut(s) 57, 144, 670, 701, 759
Alw26I GTCTC 3 cut(s) 169, 386, 1136
AlwI GGATC 2 cut(s) 1130, 1143
AoxI GGCC 2 cut(s) 737, 1234
ApoI RAATTY 1 cut(s) 653
Asp718I GGTACC 1 cut(s) 100
AspLEI GCGC 2 cut(s) 663, 665
AspS9I GGNCC 1 cut(s) 923
AsuC2I CCSGG 2 cut(s) 121, 927
AsuHPI GGTGA 2 cut(s) 76, 793
AsuNHI GCTAGC 1 cut(s) 512
AvaII GGWCC 1 cut(s) 923
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BalI TGGCCA 1 cut(s) 1236
BamHI GGATCC 1 cut(s) 1135
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 1080, 1203
BccI CCATC 4 cut(s) 136, 782, 809, 1222
BceAI ACGGC 2 cut(s) 501, 781
BciT130I CCWGG 2 cut(s) 905, 1238
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 2 cut(s) 121, 927
BcoDI GTCTC 3 cut(s) 169, 386, 1136
BfaI CTAG 2 cut(s) 351, 513
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 1 cut(s) 1113
BlsI GCNGC 1 cut(s) 1114
Bme1390I CCNGG 4 cut(s) 121, 905, 927, 1238
Bme18I GGWCC 1 cut(s) 923
BmgT120I GGNCC 1 cut(s) 923
BmiI GGNNCC 4 cut(s) 102, 415, 987, 1137
BmrFI CCNGG 4 cut(s) 121, 905, 927, 1238
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 1026
BmtI GCTAGC 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 2 cut(s) 1080, 1203
Bpu10I CCTNAGC 1 cut(s) 702
BpuMI CCSGG 2 cut(s) 121, 927
BsaI GGTCTC 1 cut(s) 1136
BsaJI CCNNGG 1 cut(s) 926
BsaWI WCCGGW 1 cut(s) 1145
BsaXI ACNNNNNCTCC 4 cut(s) 405, 435, 950, 980
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 351, 920, 1145, 1178, 1243
Bse118I RCCGGY 1 cut(s) 581
Bse1I ACTGG 2 cut(s) 289, 403
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 905, 1238
BseDI CCNNGG 1 cut(s) 926
BseGI GGATG 5 cut(s) 394, 688, 820, 1041, 1233
BseLI CCNNNNNNNGG 6 cut(s) 97, 351, 920, 1145, 1178, 1243
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 5 cut(s) 54, 1107, 1131, 1152, 1208
BseNI ACTGG 2 cut(s) 289, 403
BsePI GCGCGC 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 656
Bsh1236I CGCG 2 cut(s) 67, 663
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 739, 1236
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 4 cut(s) 120, 582, 926, 1146
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 6 cut(s) 97, 351, 920, 1145, 1178, 1243
BsmAI GTCTC 3 cut(s) 169, 386, 1136
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 2 cut(s) 26, 746
BsnI GGCC 2 cut(s) 739, 1236
Bso31I GGTCTC 1 cut(s) 1136
Bsp143I GATC 2 cut(s) 690, 1135
BspACI CCGC 3 cut(s) 24, 851, 1112
BspANI GGCC 2 cut(s) 739, 1236
BspCNI CTCAG 5 cut(s) 53, 1108, 1132, 1153, 1209
BspFNI CGCG 2 cut(s) 67, 663
BspLI GGNNCC 4 cut(s) 102, 415, 987, 1137
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 2 cut(s) 1130, 1143
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 1136
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 581
BsrI ACTGG 2 cut(s) 289, 403
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 926
BssHII GCGCGC 1 cut(s) 661
BssMI GATC 2 cut(s) 690, 1135
Bst2UI CCWGG 2 cut(s) 905, 1238
Bst4CI ACNGT 6 cut(s) 9, 211, 223, 572, 713, 1213
Bst6I CTCTTC 4 cut(s) 79, 112, 353, 651
BstC8I GCNNGC 5 cut(s) 514, 663, 832, 836, 1234
BstDEI CTNAG 7 cut(s) 40, 96, 702, 1116, 1140, 1161, 1217
BstF5I GGATG 5 cut(s) 394, 688, 820, 1041, 1233
BstFNI CGCG 2 cut(s) 67, 663
BstHHI GCGC 2 cut(s) 663, 665
BstKTI GATC 2 cut(s) 693, 1138
BstMAI GTCTC 3 cut(s) 169, 386, 1136
BstMBI GATC 2 cut(s) 690, 1135
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 3 cut(s) 513, 667, 857
BstNI CCWGG 2 cut(s) 905, 1238
BstSCI CCNGG 4 cut(s) 119, 903, 925, 1236
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 2 cut(s) 67, 663
BstV2I GAAGAC 2 cut(s) 1080, 1203
BstX2I RGATCY 1 cut(s) 1135
BstYI RGATCY 1 cut(s) 1135
BsuRI GGCC 2 cut(s) 739, 1236
BtsCI GGATG 5 cut(s) 394, 688, 820, 1041, 1233
BtsIMutI CAGTG 2 cut(s) 5, 718
Cac8I GCNNGC 5 cut(s) 514, 663, 832, 836, 1234
CfoI GCGC 2 cut(s) 663, 665
Cfr10I RCCGGY 1 cut(s) 581
Cfr13I GGNCC 1 cut(s) 923
CsiI ACCWGGT 1 cut(s) 903
Csp6I GTAC 2 cut(s) 101, 289
CviQI GTAC 2 cut(s) 101, 289
DdeI CTNAG 7 cut(s) 40, 96, 702, 1116, 1140, 1161, 1217
DpnI GATC 2 cut(s) 692, 1137
DpnII GATC 2 cut(s) 690, 1135
DraI TTTAAA 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 1234
Eam1104I CTCTTC 4 cut(s) 79, 112, 353, 651
EarI CTCTTC 4 cut(s) 79, 112, 353, 651
EciI GGCGGA 1 cut(s) 866
Eco31I GGTCTC 1 cut(s) 1136
Eco47I GGWCC 1 cut(s) 923
Eco57I CTGAAG 2 cut(s) 171, 692
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 903, 1236
FaqI GGGAC 1 cut(s) 234
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 1 cut(s) 1113
FokI GGATG 5 cut(s) 401, 695, 827, 1048, 1240
Fsp4HI GCNGC 1 cut(s) 1113
FspBI CTAG 2 cut(s) 351, 513
GlaI GCGC 2 cut(s) 662, 664
GluI GCNGC 1 cut(s) 1113
HaeIII GGCC 2 cut(s) 739, 1236
HapII CCGG 4 cut(s) 120, 582, 926, 1146
HhaI GCGC 2 cut(s) 663, 665
Hin6I GCGC 2 cut(s) 661, 663
HinP1I GCGC 2 cut(s) 661, 663
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 2 cut(s) 536, 589
HpaII CCGG 4 cut(s) 120, 582, 926, 1146
HphI GGTGA 2 cut(s) 76, 793
Hpy166II GTNNAC 1 cut(s) 923
Hpy188I TCNGA 4 cut(s) 151, 433, 1091, 1265
Hpy188III TCNNGA 5 cut(s) 238, 650, 997, 1139, 1207
Hpy8I GTNNAC 1 cut(s) 923
HpyAV CCTTC 5 cut(s) 240, 526, 925, 1074, 1095
HpyCH4III ACNGT 6 cut(s) 9, 211, 223, 572, 713, 1213
HpyCH4IV ACGT 2 cut(s) 264, 1190
HpyCH4V TGCA 5 cut(s) 281, 624, 637, 746, 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 513, 667, 857
HpyF3I CTNAG 7 cut(s) 40, 96, 702, 1116, 1140, 1161, 1217
HpySE526I ACGT 2 cut(s) 264, 1190
HspAI GCGC 2 cut(s) 661, 663
KpnI GGTACC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 2 cut(s) 690, 1135
LmnI GCTCC 2 cut(s) 413, 949
LweI GCATC 1 cut(s) 1026
MabI ACCWGGT 1 cut(s) 903
MaeI CTAG 2 cut(s) 351, 513
MaeII ACGT 2 cut(s) 264, 1190
MaeIII GTNAC 3 cut(s) 3, 223, 436
MalI GATC 2 cut(s) 692, 1137
MboI GATC 2 cut(s) 690, 1135
MboII GAAGA 9 cut(s) 26, 66, 99, 370, 556, 638, 1085, 1195, 1208
MfeI CAATTG 2 cut(s) 486, 1008
MflI RGATCY 1 cut(s) 1135
MlsI TGGCCA 1 cut(s) 1236
MluCI AATT 6 cut(s) 473, 486, 653, 1008, 1241, 1257
MluI ACGCGT 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 1236
MmeI TCCRAC 1 cut(s) 1173
Mox20I TGGCCA 1 cut(s) 1236
MscI TGGCCA 1 cut(s) 1236
MseI TTAA 9 cut(s) 62, 140, 159, 164, 261, 309, 398, 753, 900
Msp20I TGGCCA 1 cut(s) 1236
MspI CCGG 4 cut(s) 120, 582, 926, 1146
MspR9I CCNGG 4 cut(s) 121, 905, 927, 1238
MunI CAATTG 2 cut(s) 486, 1008
Mva1269I GAATGC 2 cut(s) 26, 746
MvaI CCWGG 2 cut(s) 905, 1238
MvnI CGCG 2 cut(s) 67, 663
MwoI GCNNNNNNNGC 3 cut(s) 513, 667, 857
NciI CCSGG 2 cut(s) 121, 927
NdeII GATC 2 cut(s) 690, 1135
NheI GCTAGC 1 cut(s) 512
NlaIV GGNNCC 4 cut(s) 102, 415, 987, 1137
NmeAIII GCCGAG 1 cut(s) 1108
NmuCI GTSAC 2 cut(s) 3, 436
PauI GCGCGC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 2 cut(s) 26, 746
PfeI GAWTC 2 cut(s) 536, 589
PflMI CCANNNNNTGG 2 cut(s) 1178, 1243
PkrI GCNGC 1 cut(s) 1114
Psp1406I AACGTT 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 903, 1236
PspGI CCWGG 2 cut(s) 903, 1236
PspN4I GGNNCC 4 cut(s) 102, 415, 987, 1137
PspPI GGNCC 1 cut(s) 923
PsuI RGATCY 1 cut(s) 1135
PteI GCGCGC 1 cut(s) 661
RsaI GTAC 2 cut(s) 102, 290
RsaNI GTAC 2 cut(s) 101, 289
SaqAI TTAA 9 cut(s) 62, 140, 159, 164, 261, 309, 398, 753, 900
SatI GCNGC 1 cut(s) 1113
Sau3AI GATC 2 cut(s) 690, 1135
Sau96I GGNCC 1 cut(s) 923
ScrFI CCNGG 4 cut(s) 121, 905, 927, 1238
SexAI ACCWGGT 1 cut(s) 903
SfaNI GCATC 1 cut(s) 1026
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 923
Sse9I AATT 6 cut(s) 473, 486, 653, 1008, 1241, 1257
SsiI CCGC 3 cut(s) 24, 851, 1112
SspMI CTAG 2 cut(s) 351, 513
StyD4I CCNGG 4 cut(s) 119, 903, 925, 1236
TaaI ACNGT 6 cut(s) 9, 211, 223, 572, 713, 1213
TaiI ACGT 2 cut(s) 267, 1193
TaqI TCGA 1 cut(s) 678
TaqII GACCGA 1 cut(s) 455
TasI AATT 6 cut(s) 473, 486, 653, 1008, 1241, 1257
TauI GCSGC 1 cut(s) 1115
TfiI GAWTC 2 cut(s) 536, 589
Tru1I TTAA 9 cut(s) 62, 140, 159, 164, 261, 309, 398, 753, 900
Tru9I TTAA 9 cut(s) 62, 140, 159, 164, 261, 309, 398, 753, 900
TscAI CASTG 2 cut(s) 12, 718
TseFI GTSAC 2 cut(s) 3, 436
Tsp45I GTSAC 2 cut(s) 3, 436
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 2 cut(s) 12, 718
Van91I CCANNNNNTGG 2 cut(s) 1178, 1243
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 1 cut(s) 653
XspI CTAG 2 cut(s) 351, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.