pycom16g14670

Divinyl chlorophyllide a 8-vinyl-reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
10725194 .. 10726880
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g14670.1

Sequence Viewer

Length: 1614 bp
ATGGCACAAATTGAACATATAATCAAATTGAAAGTTTACTGGGATCGATTCAACTCAAATTCAATGACCGATCGCAACCGGTTCAATGTCCATTCCAAGGGCCGAGGCCCGTCGATTGGAACTAGTTTAGGCCTTTTGGTTCGGTTACCAAACCAGCCCAGCCCAGCCCTCTCTAATAGTTCATTACTTTATAGTCACACGTCATCTTTTATATCCACCTATCATTTGGATCCTCCAGCGATAGAGTTTAACCTCCAAAAACAGCCATGGAATTCCACTGAACTCCAAGTCTCCAACCACAAGCTCCTCCTCCCCCATCAGCTTTCTTCAACTCCAACCAGAAAAACAATGTCACTGTGCTTCTCCTCCCTTGTATTCAATCTCCATGCCGCAAAGAACCAAAGCTTCATAACCCCTTTATCTTCTCGCTTCCCTAACCAAACCTGCAAGGTAAGCTCTGTTCCTTCTGCTTTTTCATCATCTTCTCCTCCAAACTTGCCTGAAACTTTGAATTTTATAAAAGATAGATTAACACCGATATCAGCTTCATCAAACCCAGTTGCTGAAATCACGAATCCACCCTCGTTCCGTGGCAAAAACTCAAAAGACATCAACATTTTGGTGGTGGGTGCAACTGGGTACATTGGGAAATTTGTTGTCAAGGAGTTGGTCAGCAGAGAGTTCAATGTTATAGCCATTGCTAGGGAGAAGAGTGGAATCAGGGGTAAAGTTAGCAAGGATGAGACTTTGAGGGAGTTGAAAGGTGCAAATGTGTGCTTTTCGGATGTGACTGATTTGGGTGTTTTGGAGAAATGTTTGGAAAATTTGGGGGTTTCGATTGATGTTGTTGTTTCATGCCTTGCTAGCCGTTCTGGGGGTGTGAAGGACTCTTGGAAGATCGATTACGAGGCCACGAAAAATAGTCTTGTCGCTGGTAGGAAGCGTGGGGCTTCACATTTTGTGTTGCTGTCTGCAATTTGTGTGCAGAAGCCCCTTCTTGAGTTTCAGCGTGCAAAGCTGAAATTCGAGTCGGAGTTGATCAGAGAAGCTGAGGAGGATAATGGGTTTAGTTATAGCATTGTGAGGCCGACCGCGTTTTTTAAGAGTTTGGGGGGTCAGGTTGAGTTGGTGAAAGATGGCAAGCCTTATGTGATGTTTGGGGATGGGAAGTTGTGTGCTTGCAAGCCAATCAGCGAGGCGGATTTGGCTTCATTTATTGTGGATTGCGTGTTGAGTGAGAACAAGATTAACCAGGTTTTGCCCATTGGAGGACCGGGGAAGGCGTTGACACCACTGGAGCAAGGGGAGTTGTTGTTTAGACTTGTGGGGAGGGAACCCAAGTTCCTGAAGGTGCCTATTGAAATTATGGACTTTGCTATCGGGGTTCTTGATTTCCTTGTAAAGATCTTTCCTTCAATGGAAGATACTGCTGAGTTTGGGAAAATTGGAAGGTATTATGCAGCTGAGAGTATGTTGGTTTTGGATCCTGAGACTGGAGAATATAATGCTGAGAAAACGCCGAGTTATGGCAAAGACACGTTGGAAGAATTCTTTGAGACTGTGCTGAGGGAGGGGATGGCCGGTCAGGAATTAGGCGAACAAACGATTTTCTAA

Protein Analysis

538

Amino Acids

59.2

Weight (kDa)

7.96

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 205 - 517 1.8e-13 NmrA-like family
Epimerase PF01370 206 - 328 2.1e-10 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 207 - 328 3e-06 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 210 - 411 8.6e-18 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013241)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 1351
AccII CGCG 1 cut(s) 1094
AciI CCGC 3 cut(s) 390, 1092, 1199
AclWI GGATC 5 cut(s) 51, 224, 237, 1478, 1491
AcoI YGGCCR 1 cut(s) 1578
AcsI RAATTY 7 cut(s) 58, 271, 511, 650, 823, 1022, 1547
AcuI CTGAAG 1 cut(s) 1367
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 7 cut(s) 97, 116, 702, 874, 1268, 1493, 1526
AflIII ACRYGT 2 cut(s) 198, 1536
AgeI ACCGGT 1 cut(s) 78
AhlI ACTAGT 1 cut(s) 122
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 1 cut(s) 1251
AloI GAACNNNNNNTCC 4 cut(s) 1325, 1326, 1357, 1358
AluBI AGCT 8 cut(s) 304, 322, 405, 456, 545, 1018, 1049, 1463
AluI AGCT 8 cut(s) 304, 322, 405, 456, 545, 1018, 1049, 1463
Alw26I GTCTC 4 cut(s) 295, 737, 1484, 1550
AlwI GGATC 5 cut(s) 51, 224, 237, 1478, 1491
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 6 cut(s) 100, 106, 130, 909, 1085, 1578
ApeKI GCWGC 1 cut(s) 1460
ApoI RAATTY 7 cut(s) 58, 271, 511, 650, 823, 1022, 1547
AsiGI ACCGGT 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 100, 107, 1271
AsuC2I CCSGG 1 cut(s) 1275
AsuHPI GGTGA 1 cut(s) 1141
AsuNHI GCTAGC 1 cut(s) 863
AvaII GGWCC 1 cut(s) 1271
BamHI GGATCC 2 cut(s) 229, 1483
BanI GGYRCC 1 cut(s) 1351
BarI GAAGNNNNNNTAC 2 cut(s) 887, 919
BbvCI CCTCAGC 2 cut(s) 1050, 1565
BbvI GCAGC 1 cut(s) 1472
BccI CCATC 4 cut(s) 324, 1130, 1157, 1570
BceAI ACGGC 1 cut(s) 852
BciT130I CCWGG 1 cut(s) 1253
BclI TGATCA 1 cut(s) 1038
BcnI CCSGG 1 cut(s) 1275
BcoDI GTCTC 4 cut(s) 295, 737, 1484, 1550
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 3 cut(s) 123, 702, 864
BfuAI ACCTGC 1 cut(s) 452
BglII AGATCT 1 cut(s) 1404
BisI GCNGC 2 cut(s) 390, 1461
BlsI GCNGC 2 cut(s) 391, 1462
Bme1390I CCNGG 2 cut(s) 1253, 1275
Bme18I GGWCC 1 cut(s) 1271
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 3 cut(s) 100, 107, 1271
BmiI GGNNCC 4 cut(s) 231, 1335, 1353, 1485
BmrFI CCNGG 2 cut(s) 1253, 1275
BmrI ACTGGG 3 cut(s) 49, 551, 645
BmtI GCTAGC 1 cut(s) 867
BmuI ACTGGG 3 cut(s) 49, 551, 645
BpmI CTGGAG 3 cut(s) 219, 1316, 1515
Bpu10I CCTNAGC 2 cut(s) 1050, 1565
BpuEI CTTGAG 1 cut(s) 1019
BpuMI CCSGG 1 cut(s) 1275
Bsa29I ATCGAT 2 cut(s) 46, 900
BsaJI CCNNGG 5 cut(s) 96, 103, 266, 589, 1274
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 1298, 1328
Bsc4I CCNNNNNNNGG 7 cut(s) 97, 116, 702, 874, 1268, 1493, 1526
Bse118I RCCGGY 2 cut(s) 78, 1580
Bse1I ACTGG 5 cut(s) 44, 557, 640, 1299, 1498
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 1 cut(s) 1253
BseCI ATCGAT 2 cut(s) 46, 900
BseDI CCNNGG 5 cut(s) 96, 103, 266, 589, 1274
BseGI GGATG 4 cut(s) 745, 790, 1168, 1581
BseLI CCNNNNNNNGG 7 cut(s) 97, 116, 702, 874, 1268, 1493, 1526
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 6 cut(s) 1041, 1422, 1455, 1479, 1500, 1556
BseNI ACTGG 5 cut(s) 44, 557, 640, 1299, 1498
BseRI GAGGAG 5 cut(s) 296, 299, 355, 477, 1067
BseXI GCAGC 1 cut(s) 1472
BseYI CCCAGC 2 cut(s) 158, 163
BsgI GTGCAG 1 cut(s) 1004
Bsh1236I CGCG 1 cut(s) 1094
Bsh1285I CGRYCG 2 cut(s) 73, 1092
BshFI GGCC 6 cut(s) 102, 108, 132, 911, 1087, 1580
BshNI GGYRCC 1 cut(s) 1351
BshTI ACCGGT 1 cut(s) 78
BshVI ATCGAT 2 cut(s) 46, 900
BsiEI CGRYCG 2 cut(s) 73, 1092
BsiSI CCGG 3 cut(s) 79, 1274, 1581
BslI CCNNNNNNNGG 7 cut(s) 97, 116, 702, 874, 1268, 1493, 1526
BsmAI GTCTC 4 cut(s) 295, 737, 1484, 1550
BsnI GGCC 6 cut(s) 102, 108, 132, 911, 1087, 1580
Bsp143I GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 3 cut(s) 390, 1092, 1199
BspANI GGCC 6 cut(s) 102, 108, 132, 911, 1087, 1580
BspCNI CTCAG 6 cut(s) 1042, 1423, 1456, 1480, 1501, 1557
BspDI ATCGAT 2 cut(s) 46, 900
BspFNI CGCG 1 cut(s) 1094
BspLI GGNNCC 4 cut(s) 231, 1335, 1353, 1485
BspMI ACCTGC 1 cut(s) 452
BspOI GCTAGC 1 cut(s) 867
BspPI GGATC 5 cut(s) 51, 224, 237, 1478, 1491
BspT107I GGYRCC 1 cut(s) 1351
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 2 cut(s) 78, 1580
BsrI ACTGG 5 cut(s) 44, 557, 640, 1299, 1498
BssAI RCCGGY 2 cut(s) 78, 1580
BssECI CCNNGG 5 cut(s) 96, 103, 266, 589, 1274
BssMI GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
BssT1I CCWWGG 2 cut(s) 96, 266
Bst2UI CCWGG 1 cut(s) 1253
Bst4CI ACNGT 2 cut(s) 357, 1561
Bst6I CTCTTC 1 cut(s) 704
BstC8I GCNNGC 5 cut(s) 865, 1011, 1142, 1180, 1184
BstDEI CTNAG 6 cut(s) 1050, 1431, 1464, 1488, 1509, 1565
BstDSI CCRYGG 2 cut(s) 266, 589
BstEII GGTNACC 1 cut(s) 144
BstF5I GGATG 4 cut(s) 745, 790, 1168, 1581
BstFNI CGCG 1 cut(s) 1094
BstKTI GATC 7 cut(s) 46, 73, 232, 900, 1041, 1407, 1486
BstMAI GTCTC 4 cut(s) 295, 737, 1484, 1550
BstMBI GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
BstMCI CGRYCG 2 cut(s) 73, 1092
BstMWI GCNNNNNNNGC 4 cut(s) 453, 864, 1015, 1205
BstNI CCWGG 1 cut(s) 1253
BstPI GGTNACC 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 1251, 1273
BstUI CGCG 1 cut(s) 1094
BstV1I GCAGC 1 cut(s) 1472
BstX2I RGATCY 3 cut(s) 229, 1404, 1483
BstYI RGATCY 3 cut(s) 229, 1404, 1483
Bsu15I ATCGAT 2 cut(s) 46, 900
BsuRI GGCC 6 cut(s) 102, 108, 132, 911, 1087, 1580
BsuTUI ATCGAT 2 cut(s) 46, 900
BtgI CCRYGG 2 cut(s) 266, 589
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 4 cut(s) 745, 790, 1168, 1581
BtsIMutI CAGTG 3 cut(s) 276, 353, 1292
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 5 cut(s) 865, 1011, 1142, 1180, 1184
CaiI CAGNNNCTG 1 cut(s) 563
Cfr10I RCCGGY 2 cut(s) 78, 1580
Cfr13I GGNCC 3 cut(s) 100, 107, 1271
ClaI ATCGAT 2 cut(s) 46, 900
CsiI ACCWGGT 1 cut(s) 1251
Csp6I GTAC 1 cut(s) 640
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 3 cut(s) 267, 386, 855
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 6 cut(s) 1050, 1431, 1464, 1488, 1509, 1565
DpnI GATC 7 cut(s) 45, 72, 231, 899, 1040, 1406, 1485
DpnII GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
EaeI YGGCCR 1 cut(s) 1578
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
EciI GGCGGA 1 cut(s) 1214
Eco130I CCWWGG 2 cut(s) 96, 266
Eco147I AGGCCT 1 cut(s) 132
Eco32I GATATC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 1271
Eco57I CTGAAG 1 cut(s) 1367
Eco91I GGTNACC 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 144
EcoRI GAATTC 2 cut(s) 271, 1547
EcoRII CCWGG 1 cut(s) 1251
EcoRV GATATC 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 96, 266
ErhI CCWWGG 2 cut(s) 96, 266
FaeI CATG 3 cut(s) 270, 389, 858
FatI CATG 3 cut(s) 266, 385, 854
FbaI TGATCA 1 cut(s) 1038
Fnu4HI GCNGC 2 cut(s) 390, 1461
FokI GGATG 4 cut(s) 752, 797, 1175, 1588
Fsp4HI GCNGC 2 cut(s) 390, 1461
FspBI CTAG 3 cut(s) 123, 702, 864
GluI GCNGC 2 cut(s) 390, 1461
GsaI CCCAGC 2 cut(s) 162, 167
GsuI CTGGAG 3 cut(s) 219, 1316, 1515
HaeIII GGCC 6 cut(s) 102, 108, 132, 911, 1087, 1580
HapII CCGG 3 cut(s) 79, 1274, 1581
Hin1II CATG 3 cut(s) 270, 389, 858
HincII GTYRAC 1 cut(s) 1287
HindII GTYRAC 1 cut(s) 1287
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 5 cut(s) 48, 574, 717, 887, 1028
HpaII CCGG 3 cut(s) 79, 1274, 1581
HphI GGTGA 1 cut(s) 1141
Hpy166II GTNNAC 2 cut(s) 37, 1287
Hpy188I TCNGA 3 cut(s) 784, 1033, 1043
Hpy188III TCNNGA 6 cut(s) 571, 998, 1345, 1388, 1487, 1586
Hpy8I GTNNAC 2 cut(s) 37, 1287
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 7 cut(s) 474, 877, 1004, 1273, 1342, 1422, 1443
HpyCH4III ACNGT 2 cut(s) 357, 1561
HpyCH4IV ACGT 2 cut(s) 200, 1538
HpyCH4V TGCA 8 cut(s) 447, 632, 767, 974, 985, 1013, 1182, 1460
HpyF10VI GCNNNNNNNGC 4 cut(s) 453, 864, 1015, 1205
HpyF3I CTNAG 6 cut(s) 1050, 1431, 1464, 1488, 1509, 1565
HpySE526I ACGT 2 cut(s) 200, 1538
Hsp92II CATG 3 cut(s) 270, 389, 858
Ksp22I TGATCA 1 cut(s) 1038
Kzo9I GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
LmnI GCTCC 2 cut(s) 309, 1297
Lsp1109I GCAGC 1 cut(s) 1472
MabI ACCWGGT 1 cut(s) 1251
MaeI CTAG 3 cut(s) 123, 702, 864
MaeII ACGT 2 cut(s) 200, 1538
MaeIII GTNAC 4 cut(s) 144, 194, 351, 787
MalI GATC 7 cut(s) 45, 72, 231, 899, 1040, 1406, 1485
MboI GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
MboII GAAGA 7 cut(s) 318, 414, 474, 721, 907, 1433, 1556
MflI RGATCY 3 cut(s) 229, 1404, 1483
MlyI GAGTC 2 cut(s) 881, 1037
MmeI TCCRAC 4 cut(s) 318, 359, 1011, 1521
MseI TTAA 4 cut(s) 249, 530, 1101, 1248
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 1463
MspI CCGG 3 cut(s) 79, 1274, 1581
MspR9I CCNGG 2 cut(s) 1253, 1275
MvaI CCWGG 1 cut(s) 1253
MvnI CGCG 1 cut(s) 1094
MwoI GCNNNNNNNGC 4 cut(s) 453, 864, 1015, 1205
NciI CCSGG 1 cut(s) 1275
NcoI CCATGG 1 cut(s) 266
NdeII GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
NheI GCTAGC 1 cut(s) 863
NlaIII CATG 3 cut(s) 270, 389, 858
NlaIV GGNNCC 4 cut(s) 231, 1335, 1353, 1485
NmeAIII GCCGAG 2 cut(s) 128, 1545
NmuCI GTSAC 3 cut(s) 194, 351, 787
PceI AGGCCT 1 cut(s) 132
PfeI GAWTC 3 cut(s) 48, 574, 717
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 2 cut(s) 391, 1462
Ple19I CGATCG 1 cut(s) 73
PleI GAGTC 2 cut(s) 881, 1036
PpsI GAGTC 2 cut(s) 881, 1036
PsiI TTATAA 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 1251
PspEI GGTNACC 1 cut(s) 144
PspFI CCCAGC 2 cut(s) 158, 163
PspGI CCWGG 1 cut(s) 1251
PspN4I GGNNCC 4 cut(s) 231, 1335, 1353, 1485
PspPI GGNCC 3 cut(s) 100, 107, 1271
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 229, 1404, 1483
PvuI CGATCG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 1463
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 4 cut(s) 249, 530, 1101, 1248
SatI GCNGC 2 cut(s) 390, 1461
Sau3AI GATC 7 cut(s) 43, 70, 229, 897, 1038, 1404, 1483
Sau96I GGNCC 3 cut(s) 100, 107, 1271
SchI GAGTC 2 cut(s) 881, 1037
ScrFI CCNGG 2 cut(s) 1253, 1275
SexAI ACCWGGT 1 cut(s) 1251
SinI GGWCC 1 cut(s) 1271
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SpeI ACTAGT 1 cut(s) 122
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 3 cut(s) 390, 1092, 1199
SspMI CTAG 3 cut(s) 123, 702, 864
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 1251, 1273
StyI CCWWGG 2 cut(s) 96, 266
TaaI ACNGT 2 cut(s) 357, 1561
TaiI ACGT 2 cut(s) 203, 1541
TaqI TCGA 5 cut(s) 46, 113, 836, 900, 1026
TaqII GACCGA 1 cut(s) 83
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 3 cut(s) 48, 574, 717
Tru1I TTAA 4 cut(s) 249, 530, 1101, 1248
Tru9I TTAA 4 cut(s) 249, 530, 1101, 1248
TscAI CASTG 3 cut(s) 283, 360, 1299
TseFI GTSAC 3 cut(s) 194, 351, 787
TseI GCWGC 1 cut(s) 1460
Tsp45I GTSAC 3 cut(s) 194, 351, 787
TspDTI ATGAA 6 cut(s) 171, 397, 465, 537, 843, 1200
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 3 cut(s) 283, 360, 1299
VpaK11BI GGWCC 1 cut(s) 1271
XapI RAATTY 7 cut(s) 58, 271, 511, 650, 823, 1022, 1547
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XspI CTAG 3 cut(s) 123, 702, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.