Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013241

Physical Location & Seq

Genomic Coordinates Forward (+)

29947326 .. 29952339

Gene Structure 5014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGGAGCGGGAAAGAAAGGAACTCTAAGAACAAGGGTAAGCCGCTTGGCCCCAAAACTGAGTACAACAAGAACAAGAACAAGAAGAAGCAACAGCGGCCCAACAAGAATACCCAAAATGAAAACCAAATCGGAACTCAAAACAGCGAAGACGGCAACAAGCTACAACCGGCATCGCCGTCGGCACAACTCAACTCGTTCCTCGACAAGTTTCAATCCGCCAATCGTCTCCAGCTTTCTTCTCTCGAATTGGACTCCCTCAACGATAAATGTATTGTGGACCTGTCTGGAAGCACGGATCAAGATGTCGAAAACTTGGGGAAACATGTGAAGGCAGCTTTTGGCCCATCATGGAAAGCCGAACTATGTGATAAGCGTCTCTTGGAAGGAAAAGTTGATCCAGGGAGTCCAGCAGTTCTTATTATTAGTACATCTGCCTTGAGATCAATAGAACTTCTAAGGGGCTTTCGGTCGCTGACTAAAGAATGCCATCCAGTGAAGCTGTTCTCAAAGCATATGAAGGTTGACGAACAGGTCTCCTTGTTAAAGGACCGTGTTAACATCGCTAGTGGTACACCAAGCAGGATAAAGAAGCTAATTGACATTGAGGCATTGGGGCTTTCACGGTTATCAGTGATTGTGCTTGATGTGCACCCAGATGTAAAGGGCTATTCCCTGTTGACGCTTCCACAAGTAAGAGATGAATTTTGGGATTTGTACAAGACGTATTTTCACCAGCGATTACTCCAAGGTTCCTTGCGTCTTTCTCTTTATGGTCCATTAATATCTGATAATGAGTTCAAGGGAAAAAAGAAACCCACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0051744 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

275

Amino Acids

30.77

Weight (kDa)

9.55

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMS1	PF14617	23 - 239	1.7e-28	U3-containing 90S pre-ribosomal complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18660
fragaria_vesca	FvH4_4g17240
malus_domestica	MD13G1173600.v1.1
prunus_persica	Prupe.1G141800_v2.0.a1
pyrus_communis	pycom16g14670
rosa_chinensis	RchiOBHm_Chr4g0421151
rosa_laevigata	RLG00000007711
rosa_multiflora	Rmu_co8498633.1_g000001 Rmu_sc0009290.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363440
rosa_rugosa	Rorug04G0170000 Rorug04G0170100 Rorug04G0170200
rosa_samantha	Rh4AG229600 Rh4BG232300 Rh4CG243900 Rh4DG228000
rosa_wichuraiana	Rw4G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	4 cut(s)	9, 44, 97, 219
AclWI	GGATC	2 cut(s)	306, 392
AcsI	RAATTY	1 cut(s)	704
AfaI	GTAC	4 cut(s)	65, 430, 574, 719
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	215, 802
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	5 cut(s)	163, 235, 338, 502, 595
AluI	AGCT	5 cut(s)	163, 235, 338, 502, 595
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	3 cut(s)	233, 383, 541
Alw44I	GTGCAC	1 cut(s)	650
AlwI	GGATC	2 cut(s)	306, 392
AoxI	GGCC	3 cut(s)	49, 98, 343
ApaLI	GTGCAC	1 cut(s)	650
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	704
AseI	ATTAAT	1 cut(s)	782
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	6 cut(s)	50, 99, 280, 344, 550, 776
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	3 cut(s)	280, 550, 776
BaeGI	GKGCMC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	2 cut(s)	355, 498
BceAI	ACGGC	2 cut(s)	163, 169
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	3 cut(s)	233, 383, 541
BfaI	CTAG	1 cut(s)	567
BisI	GCNGC	3 cut(s)	44, 98, 336
BlsI	GCNGC	3 cut(s)	45, 99, 337
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	3 cut(s)	280, 550, 776
BmgT120I	GGNCC	6 cut(s)	50, 99, 280, 344, 550, 776
BmiI	GGNNCC	2 cut(s)	52, 754
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	401, 748
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	401, 748
BseGI	GGATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	51, 100, 345
BsiEI	CGRYCG	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	233, 383, 541
BsmBI	CGTCTC	2 cut(s)	233, 383
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	51, 100, 345
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	3 cut(s)	298, 397, 443
BspACI	CCGC	4 cut(s)	9, 44, 97, 219
BspANI	GGCC	3 cut(s)	51, 100, 345
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	52, 754
BspPI	GGATC	2 cut(s)	306, 392
BspTNI	GGTCTC	1 cut(s)	541
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	401, 748
BssMI	GATC	3 cut(s)	298, 397, 443
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	554, 627
BstAUI	TGTACA	1 cut(s)	717
BstDEI	CTNAG	3 cut(s)	27, 60, 458
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	3 cut(s)	301, 400, 446
BstMAI	GTCTC	3 cut(s)	233, 383, 541
BstMBI	GATC	3 cut(s)	298, 397, 443
BstMCI	CGRYCG	1 cut(s)	473
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 153, 649
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	51, 100, 345
BtgZI	GCGATG	2 cut(s)	159, 547
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	3 cut(s)	501, 639, 819
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	6 cut(s)	50, 99, 280, 344, 550, 776
CseI	GACGC	3 cut(s)	365, 691, 749
Csp6I	GTAC	4 cut(s)	64, 429, 573, 718
CviAII	CATG	2 cut(s)	326, 351
CviQI	GTAC	4 cut(s)	64, 429, 573, 718
DdeI	CTNAG	3 cut(s)	27, 60, 458
DpnI	GATC	3 cut(s)	300, 399, 445
DpnII	GATC	3 cut(s)	298, 397, 443
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	3 cut(s)	280, 550, 776
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
Esp3I	CGTCTC	2 cut(s)	233, 383
FaeI	CATG	2 cut(s)	329, 354
FaiI	YATR	6 cut(s)	327, 352, 367, 516, 518, 774
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	2 cut(s)	325, 350
FauI	CCCGC	1 cut(s)	2
FauNDI	CATATG	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	44, 98, 336
FokI	GGATG	1 cut(s)	477
Fsp4HI	GCNGC	3 cut(s)	44, 98, 336
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	3 cut(s)	44, 98, 336
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	51, 100, 345
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	3 cut(s)	365, 691, 749
Hin1II	CATG	2 cut(s)	329, 354
HincII	GTYRAC	3 cut(s)	526, 559, 681
HindII	GTYRAC	3 cut(s)	526, 559, 681
HinfI	GANTC	2 cut(s)	254, 406
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	6 cut(s)	280, 526, 559, 575, 652, 681
Hpy188I	TCNGA	2 cut(s)	134, 790
Hpy188III	TCNNGA	3 cut(s)	245, 288, 302
Hpy8I	GTNNAC	6 cut(s)	280, 526, 559, 575, 652, 681
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	325, 380, 514
HpyCH4III	ACNGT	2 cut(s)	554, 627
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	1 cut(s)	652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 153, 649
HpyF3I	CTNAG	3 cut(s)	27, 60, 458
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	2 cut(s)	329, 354
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	298, 397, 443
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	725
MalI	GATC	3 cut(s)	300, 399, 445
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	3 cut(s)	298, 397, 443
MboII	GAAGA	3 cut(s)	97, 161, 231
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	3 cut(s)	248, 597, 704
MlyI	GAGTC	2 cut(s)	248, 415
MnlI	CCTC	3 cut(s)	212, 269, 601
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	3 cut(s)	545, 558, 782
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	97, 153, 649
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	3 cut(s)	298, 397, 443
NlaIII	CATG	2 cut(s)	329, 354
NlaIV	GGNNCC	2 cut(s)	52, 754
NspI	RCATGY	1 cut(s)	329
PciI	ACATGT	1 cut(s)	325
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	45, 99, 337
PleI	GAGTC	2 cut(s)	248, 414
PpsI	GAGTC	2 cut(s)	248, 414
PscI	ACATGT	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	52, 754
PspPI	GGNCC	6 cut(s)	50, 99, 280, 344, 550, 776
RsaI	GTAC	4 cut(s)	65, 430, 574, 719
RsaNI	GTAC	4 cut(s)	64, 429, 573, 718
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	545, 558, 782
SatI	GCNGC	3 cut(s)	44, 98, 336
Sau3AI	GATC	3 cut(s)	298, 397, 443
Sau96I	GGNCC	6 cut(s)	50, 99, 280, 344, 550, 776
SchI	GAGTC	2 cut(s)	248, 415
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	654
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	3 cut(s)	280, 550, 776
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	3 cut(s)	248, 597, 704
SsiI	CCGC	4 cut(s)	9, 44, 97, 219
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	554, 627
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	3 cut(s)	204, 246, 309
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	3 cut(s)	248, 597, 704
TatI	WGTACW	3 cut(s)	63, 428, 717
TauI	GCSGC	2 cut(s)	46, 100
Tru1I	TTAA	3 cut(s)	545, 558, 782
Tru9I	TTAA	3 cut(s)	545, 558, 782
TscAI	CASTG	3 cut(s)	501, 639, 826
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	135, 533, 717
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	3 cut(s)	501, 639, 826
VneI	GTGCAC	1 cut(s)	650
VpaK11BI	GGWCC	3 cut(s)	280, 550, 776
VspI	ATTAAT	1 cut(s)	782
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.