Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013241

Physical Location & Seq

Genomic Coordinates Forward (+)

29942489 .. 29942986

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0170100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGGCCTAATGGTCATGACCAATTTTGCAATGCTATAACTACGATGACCAAGCAGCTGGATGAGCCGAAGAACAAGATTGAAATGATGATTCTTGATAGTTATGGTTTTGGATCAGAGAAATCAAGGTCGATCATGGCAAGCAAGTCGACGTTACTGATTAATAAATACAATGCACCTCCATTAGGGGATGATCACGTGAATGGACTCCCTGCTCACACTGACAAAAGATTGTCCACAACACTTTGTGATGATCAAGTTTCAGGGCTGGAATTTGAAACCACAGATGGACAATGGGTGAAGCTGTCACTCTCTCCTGCCCCCTTTGTTTTATTGTCGGAGTTATTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0051744 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

117

Amino Acids

13.03

Weight (kDa)

4.99

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	52 - 111	3.4e-06	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18660
fragaria_vesca	FvH4_4g17240
malus_domestica	MD13G1173600.v1.1
prunus_persica	Prupe.1G141800_v2.0.a1
pyrus_communis	pycom16g14670
rosa_chinensis	RchiOBHm_Chr4g0421151
rosa_laevigata	RLG00000007711
rosa_multiflora	Rmu_co8498633.1_g000001 Rmu_sc0009290.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363440
rosa_rugosa	Rorug04G0170000 Rorug04G0170100 Rorug04G0170200
rosa_samantha	Rh4AG229600 Rh4BG232300 Rh4CG243900 Rh4DG228000
rosa_wichuraiana	Rw4G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	272
AcvI	CACGTG	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	83, 278
AluBI	AGCT	2 cut(s)	58, 304
AluI	AGCT	2 cut(s)	58, 304
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	272
AseI	ATTAAT	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	310
BbrPI	CACGTG	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BclI	TGATCA	2 cut(s)	193, 253
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	67, 196
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	4 cut(s)	113, 132, 193, 253
BspANI	GGCC	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	16
BspPI	GGATC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	37
BssMI	GATC	4 cut(s)	113, 132, 193, 253
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	142
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	67, 196
BstKTI	GATC	4 cut(s)	116, 135, 196, 256
BstMBI	GATC	4 cut(s)	113, 132, 193, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	67
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	67, 196
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	16
CviAII	CATG	2 cut(s)	17, 136
CviJI	RGCY	5 cut(s)	7, 58, 67, 268, 304
CviKI_1	RGCY	5 cut(s)	7, 58, 67, 268, 304
DpnI	GATC	4 cut(s)	115, 134, 195, 255
DpnII	GATC	4 cut(s)	113, 132, 193, 253
DraIII	CACNNNGTG	1 cut(s)	248
Eco72I	CACGTG	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	20, 139
FaiI	YATR	5 cut(s)	18, 38, 105, 137, 352
FatI	CATG	2 cut(s)	16, 135
FbaI	TGATCA	2 cut(s)	193, 253
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	2 cut(s)	74, 203
Fsp4HI	GCNGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	20, 139
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	91, 207
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	150, 237
Hpy188I	TCNGA	2 cut(s)	118, 340
Hpy188III	TCNNGA	2 cut(s)	17, 95
Hpy8I	GTNNAC	2 cut(s)	150, 237
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	152, 198
HpyCH4V	TGCA	2 cut(s)	30, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpySE526I	ACGT	2 cut(s)	152, 198
Hsp92II	CATG	2 cut(s)	20, 139
Ksp22I	TGATCA	2 cut(s)	193, 253
Kzo9I	GATC	4 cut(s)	113, 132, 193, 253
LpnPI	CCDG	5 cut(s)	44, 225, 249, 254, 330
Lsp1109I	GCAGC	1 cut(s)	67
MaeII	ACGT	2 cut(s)	152, 198
MaeIII	GTNAC	2 cut(s)	153, 306
MalI	GATC	4 cut(s)	115, 134, 195, 255
MboI	GATC	4 cut(s)	113, 132, 193, 253
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	2 cut(s)	23, 272
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	4 cut(s)	113, 132, 193, 253
NlaIII	CATG	2 cut(s)	20, 139
NmuCI	GTSAC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	201
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	4 cut(s)	113, 132, 193, 253
SchI	GAGTC	1 cut(s)	201
SetI	ASST	6 cut(s)	60, 131, 155, 181, 201, 306
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	23, 272
TaiI	ACGT	2 cut(s)	155, 201
TaqI	TCGA	2 cut(s)	131, 149
TasI	AATT	2 cut(s)	23, 272
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	306
TspRI	CASTG	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.