Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013241

Physical Location & Seq

Genomic Coordinates Forward (+)

39763442 .. 39768427

Gene Structure 4986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTCACTGTGCTTCTCCTCCACCGCATTCAATCTTCACTCAGCAAAAAACCAGAGCTTGTTAACGCGTTTCTCTTCTCACTTCACCAACCCAACTAAAGTAACCTCTTCTCTCTTTACTGGGTTTCCATCATCTCCGTTAAGCTTATCTGAAGTCGTTAAGTTCAGCAAAGACAGACTAAAACCCATTTCGGCTTCAACGACCCCAACTGTTGAAACGACCGTTACACCTTCATTCAGGAACAAAAGTCCCAAAGACATTAACGTTTTGGTTGTGGGTGCAACTGGGTACATTGGAAAGTTTGTGGTTAAGGAGTTAGTGGATAGAGAGTTCAATGTTATAGCTATTGCTAGGGAGAAGAGTGGGATTAGAGGTAAGTTTAGCAAGGATGAGACTTTAAACCAGTTGAAAGGAGCCAATGTGTGCTTTTCAGATGTGACCAATTTGGATAGTTTGGAGAAATCTATGGAAGAATTGGGTGTTTCAATTGATGTAGTGGTTTCTTGCCTTGCTAGCCGTAGTGGTGGTGTGAAGGATTCTTGGAAGATAGACTATGAGGCAACAAAGAACAGTCTTGTTGCCGGTAGGAATCGTGGGGCTTCACACTTTGTGTTGCTTTCTGCAATATGTGTGCAGAAGCCTCTTCTTGAATTCCAGCGCGCAAAGCTGAAGTTCGAGGATGAGTTGATCAAGGAAGCTAAGGAGGACAGTGGTTTCAGTTATAGTATTGTGAGGCCAACTGCATTCTTTAAGAGCTTGGGGGGTCAGGTTGAGTTGGTGAAAGATGGGAAGCCGTATGTGATGTTTGGGGATGGGAAGTTGTGTGCTTGCAAGCCGATTAGTGAGGCAGATTTGGCTTCGTTTATTGCTGATTGTGTGTTGAGTGAAAATAAGATTAACCAGGTTTTGCCTATTGGTGGACCGGGGAAGGCATTGACACCAATGGAGCAAGGGGAGTTGCTGTTTAGACTTGTGGGGAGGGAACCCAAGTTCTTGAAAGTGCCGATTGAGATAATGGACTTTGCTATTGGGGTGCTTGATTTCCTTGTAAAGATATTTCCTTCAATGGAAGACACAGCCGAGTTCGGAAAGATTGGAAGGTATTATGCAGCTGAGAGTATGTTGGTTTTGGATCCTGAGACCGGAGAATATAGTGCTGAGAAAACACCAAGTTATGGCAAAGACACGTTGGAAGACTTCTTCCAGACTGTGCTGAGAGAAGGGATGGCTGGCCAGGAATTGGGGGAGCAAACAATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0051744 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

420

Amino Acids

46.03

Weight (kDa)

5.89

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	88 - 377	6.6e-13	NmrA-like family
Epimerase	PF01370	89 - 211	9.4e-11	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	90 - 211	1.1e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	93 - 294	5.7e-20	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18660
fragaria_vesca	FvH4_4g17240
malus_domestica	MD13G1173600.v1.1
prunus_persica	Prupe.1G141800_v2.0.a1
pyrus_communis	pycom16g14670
rosa_chinensis	RchiOBHm_Chr4g0421151
rosa_laevigata	RLG00000007711
rosa_multiflora	Rmu_co8498633.1_g000001 Rmu_sc0009290.1_g000003
rosa_roxburghii	Rroxscaffold_5G00363440
rosa_rugosa	Rorug04G0170000 Rorug04G0170100 Rorug04G0170200
rosa_samantha	Rh4AG229600 Rh4BG232300 Rh4CG243900 Rh4DG228000
rosa_wichuraiana	Rw4G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1175, 1240
AccII	CGCG	2 cut(s)	67, 660
AciI	CCGC	1 cut(s)	24
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	2 cut(s)	1127, 1140
AcoI	YGGCCR	1 cut(s)	1231
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	2 cut(s)	171, 689
AdeI	CACNNNGTG	1 cut(s)	610
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	4 cut(s)	917, 1142, 1175, 1240
AflIII	ACRYGT	2 cut(s)	65, 1185
AgsI	TTSAA	9 cut(s)	31, 198, 215, 334, 409, 486, 650, 997, 1065
AjnI	CCWGG	2 cut(s)	900, 1233
AloI	GAACNNNNNNTCC	4 cut(s)	314, 346, 974, 1006
AluBI	AGCT	7 cut(s)	57, 144, 344, 667, 698, 756, 1112
AluI	AGCT	7 cut(s)	57, 144, 344, 667, 698, 756, 1112
Alw26I	GTCTC	2 cut(s)	386, 1133
AlwI	GGATC	2 cut(s)	1127, 1140
AoxI	GGCC	2 cut(s)	734, 1231
ApeKI	GCWGC	1 cut(s)	1109
ApoI	RAATTY	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	660, 662
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	1 cut(s)	924
AsuHPI	GGTGA	2 cut(s)	76, 790
AsuNHI	GCTAGC	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	920
BalI	TGGCCA	1 cut(s)	1233
BamHI	GGATCC	1 cut(s)	1132
BbsI	GAAGAC	2 cut(s)	1077, 1200
BbvI	GCAGC	1 cut(s)	1121
BccI	CCATC	4 cut(s)	136, 779, 806, 1219
BceAI	ACGGC	2 cut(s)	501, 778
BciT130I	CCWGG	2 cut(s)	902, 1235
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	2 cut(s)	386, 1133
BfaI	CTAG	2 cut(s)	351, 513
BisI	GCNGC	1 cut(s)	1110
BlsI	GCNGC	1 cut(s)	1111
Bme1390I	CCNGG	3 cut(s)	902, 924, 1235
Bme18I	GGWCC	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	3 cut(s)	415, 984, 1134
BmrFI	CCNGG	3 cut(s)	902, 924, 1235
BmrI	ACTGGG	2 cut(s)	129, 294
BmtI	GCTAGC	1 cut(s)	516
BmuI	ACTGGG	2 cut(s)	129, 294
BpiI	GAAGAC	2 cut(s)	1077, 1200
Bpu10I	CCTNAGC	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	924
BsaI	GGTCTC	1 cut(s)	1133
BsaJI	CCNNGG	1 cut(s)	923
BsaWI	WCCGGW	1 cut(s)	1142
BsaXI	ACNNNNNCTCC	4 cut(s)	405, 435, 947, 977
Bsc4I	CCNNNNNNNGG	4 cut(s)	917, 1142, 1175, 1240
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	3 cut(s)	124, 289, 403
BseBI	CCWGG	2 cut(s)	902, 1235
BseDI	CCNNGG	1 cut(s)	923
BseGI	GGATG	4 cut(s)	394, 685, 817, 1230
BseLI	CCNNNNNNNGG	4 cut(s)	917, 1142, 1175, 1240
BseMII	CTCAG	5 cut(s)	54, 1104, 1128, 1149, 1205
BseNI	ACTGG	3 cut(s)	124, 289, 403
BsePI	GCGCGC	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	1121
BsgI	GTGCAG	1 cut(s)	653
Bsh1236I	CGCG	2 cut(s)	67, 660
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	736, 1233
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	582, 923, 1143
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	4 cut(s)	917, 1142, 1175, 1240
BsmAI	GTCTC	2 cut(s)	386, 1133
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	2 cut(s)	26, 743
BsnI	GGCC	2 cut(s)	736, 1233
Bso31I	GGTCTC	1 cut(s)	1133
Bsp143I	GATC	2 cut(s)	687, 1132
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	736, 1233
BspCNI	CTCAG	5 cut(s)	53, 1105, 1129, 1150, 1206
BspFNI	CGCG	2 cut(s)	67, 660
BspLI	GGNNCC	3 cut(s)	415, 984, 1134
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	1127, 1140
BspTNI	GGTCTC	1 cut(s)	1133
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	124, 289, 403
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	923
BssHII	GCGCGC	1 cut(s)	658
BssMI	GATC	2 cut(s)	687, 1132
Bst2UI	CCWGG	2 cut(s)	902, 1235
Bst4CI	ACNGT	6 cut(s)	9, 211, 223, 572, 710, 1210
Bst6I	CTCTTC	4 cut(s)	79, 112, 353, 648
BstC8I	GCNNGC	5 cut(s)	514, 660, 829, 833, 1231
BstDEI	CTNAG	6 cut(s)	40, 699, 1113, 1137, 1158, 1214
BstF5I	GGATG	4 cut(s)	394, 685, 817, 1230
BstFNI	CGCG	2 cut(s)	67, 660
BstHHI	GCGC	2 cut(s)	660, 662
BstKTI	GATC	2 cut(s)	690, 1135
BstMAI	GTCTC	2 cut(s)	386, 1133
BstMBI	GATC	2 cut(s)	687, 1132
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	513, 664, 854
BstNI	CCWGG	2 cut(s)	902, 1235
BstSCI	CCNGG	3 cut(s)	900, 922, 1233
BstUI	CGCG	2 cut(s)	67, 660
BstV1I	GCAGC	1 cut(s)	1121
BstV2I	GAAGAC	2 cut(s)	1077, 1200
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
BsuRI	GGCC	2 cut(s)	736, 1233
BtsCI	GGATG	4 cut(s)	394, 685, 817, 1230
BtsIMutI	CAGTG	2 cut(s)	5, 715
Cac8I	GCNNGC	5 cut(s)	514, 660, 829, 833, 1231
CfoI	GCGC	2 cut(s)	660, 662
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	920
CsiI	ACCWGGT	1 cut(s)	900
Csp6I	GTAC	1 cut(s)	289
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	6 cut(s)	40, 699, 1113, 1137, 1158, 1214
DpnI	GATC	2 cut(s)	689, 1134
DpnII	GATC	2 cut(s)	687, 1132
DraI	TTTAAA	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	1231
Eam1104I	CTCTTC	4 cut(s)	79, 112, 353, 648
EarI	CTCTTC	4 cut(s)	79, 112, 353, 648
Eco31I	GGTCTC	1 cut(s)	1133
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	2 cut(s)	171, 689
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	2 cut(s)	900, 1233
FaqI	GGGAC	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	1 cut(s)	1110
FokI	GGATG	4 cut(s)	401, 692, 824, 1237
Fsp4HI	GCNGC	1 cut(s)	1110
FspBI	CTAG	2 cut(s)	351, 513
GlaI	GCGC	2 cut(s)	659, 661
GluI	GCNGC	1 cut(s)	1110
HaeIII	GGCC	2 cut(s)	736, 1233
HapII	CCGG	3 cut(s)	582, 923, 1143
HhaI	GCGC	2 cut(s)	660, 662
Hin6I	GCGC	2 cut(s)	658, 660
HinP1I	GCGC	2 cut(s)	658, 660
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	2 cut(s)	536, 589
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	3 cut(s)	582, 923, 1143
HphI	GGTGA	2 cut(s)	76, 790
Hpy166II	GTNNAC	2 cut(s)	63, 920
Hpy188I	TCNGA	4 cut(s)	151, 433, 1088, 1262
Hpy188III	TCNNGA	5 cut(s)	238, 647, 994, 1136, 1204
Hpy8I	GTNNAC	2 cut(s)	63, 920
HpyAV	CCTTC	6 cut(s)	240, 526, 922, 1071, 1092, 1214
HpyCH4III	ACNGT	6 cut(s)	9, 211, 223, 572, 710, 1210
HpyCH4IV	ACGT	2 cut(s)	264, 1187
HpyCH4V	TGCA	6 cut(s)	281, 623, 634, 743, 831, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	513, 664, 854
HpyF3I	CTNAG	6 cut(s)	40, 699, 1113, 1137, 1158, 1214
HpySE526I	ACGT	2 cut(s)	264, 1187
HspAI	GCGC	2 cut(s)	658, 660
Ksp22I	TGATCA	1 cut(s)	687
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	687, 1132
LmnI	GCTCC	3 cut(s)	413, 946, 1246
Lsp1109I	GCAGC	1 cut(s)	1121
MabI	ACCWGGT	1 cut(s)	900
MaeI	CTAG	2 cut(s)	351, 513
MaeII	ACGT	2 cut(s)	264, 1187
MaeIII	GTNAC	4 cut(s)	3, 100, 223, 436
MalI	GATC	2 cut(s)	689, 1134
MboI	GATC	2 cut(s)	687, 1132
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	1132
MlsI	TGGCCA	1 cut(s)	1233
MluCI	AATT	6 cut(s)	442, 473, 486, 650, 1238, 1254
MluI	ACGCGT	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	1233
MmeI	TCCRAC	1 cut(s)	1170
Mox20I	TGGCCA	1 cut(s)	1233
MscI	TGGCCA	1 cut(s)	1233
MseI	TTAA	8 cut(s)	62, 140, 159, 261, 309, 398, 750, 897
Msp20I	TGGCCA	1 cut(s)	1233
MspA1I	CMGCKG	1 cut(s)	1112
MspI	CCGG	3 cut(s)	582, 923, 1143
MspR9I	CCNGG	3 cut(s)	902, 924, 1235
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	26, 743
MvaI	CCWGG	2 cut(s)	902, 1235
MvnI	CGCG	2 cut(s)	67, 660
MwoI	GCNNNNNNNGC	3 cut(s)	513, 664, 854
NciI	CCSGG	1 cut(s)	924
NdeII	GATC	2 cut(s)	687, 1132
NheI	GCTAGC	1 cut(s)	512
NlaIV	GGNNCC	3 cut(s)	415, 984, 1134
NmeAIII	GCCGAG	1 cut(s)	1105
NmuCI	GTSAC	2 cut(s)	3, 436
PauI	GCGCGC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	2 cut(s)	26, 743
PfeI	GAWTC	2 cut(s)	536, 589
PflMI	CCANNNNNTGG	2 cut(s)	1175, 1240
PkrI	GCNGC	1 cut(s)	1111
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	900, 1233
PspGI	CCWGG	2 cut(s)	900, 1233
PspN4I	GGNNCC	3 cut(s)	415, 984, 1134
PspPI	GGNCC	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	1132
PteI	GCGCGC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	8 cut(s)	62, 140, 159, 261, 309, 398, 750, 897
SatI	GCNGC	1 cut(s)	1110
Sau3AI	GATC	2 cut(s)	687, 1132
Sau96I	GGNCC	1 cut(s)	920
ScrFI	CCNGG	3 cut(s)	902, 924, 1235
SexAI	ACCWGGT	1 cut(s)	900
SinI	GGWCC	1 cut(s)	920
Sse9I	AATT	6 cut(s)	442, 473, 486, 650, 1238, 1254
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	351, 513
StyD4I	CCNGG	3 cut(s)	900, 922, 1233
TaaI	ACNGT	6 cut(s)	9, 211, 223, 572, 710, 1210
TaiI	ACGT	2 cut(s)	267, 1190
TaqI	TCGA	1 cut(s)	675
TasI	AATT	6 cut(s)	442, 473, 486, 650, 1238, 1254
TfiI	GAWTC	2 cut(s)	536, 589
Tru1I	TTAA	8 cut(s)	62, 140, 159, 261, 309, 398, 750, 897
Tru9I	TTAA	8 cut(s)	62, 140, 159, 261, 309, 398, 750, 897
TscAI	CASTG	2 cut(s)	12, 715
TseFI	GTSAC	2 cut(s)	3, 436
TseI	GCWGC	1 cut(s)	1109
Tsp45I	GTSAC	2 cut(s)	3, 436
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	12, 715
Van91I	CCANNNNNTGG	2 cut(s)	1175, 1240
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	1 cut(s)	650
XspI	CTAG	2 cut(s)	351, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.