MD13G1227700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017376
Physical Location & Seq
Forward (+)
22283082 .. 22285519
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1227700.v1.1.491

Sequence Viewer

Length: 447 bp
ATGGTCGATGTGAAAAGGTTGCAAGAAAAGCAAAAAAACAAGTACAACAATAGAAAGAGAGAAAGAGACCCAGAAGATGAAGCAGCAACGGCAGCTAAAAGAGAAGGAAAGGAAGAAAAGAAAGAGGTAATTGTACTGAAGGACCCACTGAAGGTGTTTGGCAGGGACATCATGTCCATGATTCTGGACAACCTCGACGCGCGCAGTGGCGTGCTCTCTCTCCTCGTCTCGCATGCATGGCACGGCGTCGCTTCCAGTGACCGCCTTTGGAGTTCCAAGTGTGATGAATTGTGGCTGGGAAAAGCACACATGCCTAGGTTGTTGCAAATTCAGGGCTTGTCAAAGTTGGCCGCTTATTCATTATCTTATGTGGATGGCAAGCGTGCACGCATAATGAAGGATGATTTGTGTGACCATGTTTGGGATTTCCATTTTAACAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

149

Amino Acids

17.14

Weight (kDa)

9.2

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 200, 202
AciI CCGC 2 cut(s) 262, 351
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 2 cut(s) 158, 170
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 2 cut(s) 44, 135
AfiI CCNNNNNNNGG 2 cut(s) 151, 421
AhdI GACNNNNNGTC 1 cut(s) 172
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw21I GWGCWC 2 cut(s) 216, 388
Alw26I GTCTC 2 cut(s) 60, 232
Alw44I GTGCAC 1 cut(s) 384
AoxI GGCC 1 cut(s) 348
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 83, 92
ApoI RAATTY 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 314
AspLEI GCGC 2 cut(s) 202, 204
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
AvrII CCTAGG 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 216, 388
BbvI GCAGC 2 cut(s) 95, 104
BccI CCATC 1 cut(s) 368
BceAI ACGGC 2 cut(s) 105, 259
BcoDI GTCTC 2 cut(s) 60, 232
BfaI CTAG 1 cut(s) 315
BisI GCNGC 3 cut(s) 84, 93, 351
BlnI CCTAGG 1 cut(s) 314
BlsI GCNGC 3 cut(s) 85, 94, 352
Bme18I GGWCC 1 cut(s) 142
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 421
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 379, 406
BseLI CCNNNNNNNGG 2 cut(s) 151, 421
BseNI ACTGG 1 cut(s) 255
BsePI GCGCGC 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 2 cut(s) 95, 104
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 2 cut(s) 200, 202
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 2 cut(s) 216, 388
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 151, 421
BsmAI GTCTC 2 cut(s) 60, 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 216, 388
BspACI CCGC 2 cut(s) 262, 351
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 2 cut(s) 200, 202
BspLI GGNNCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 314
BssHII GCGCGC 1 cut(s) 200
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 6 cut(s) 202, 212, 234, 380, 384, 388
BstF5I GGATG 2 cut(s) 379, 406
BstFNI CGCG 2 cut(s) 200, 202
BstHHI GCGC 2 cut(s) 202, 204
BstMAI GTCTC 2 cut(s) 60, 232
BstMWI GCNNNNNNNGC 4 cut(s) 28, 89, 92, 238
BstNSI RCATGY 2 cut(s) 236, 313
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 200, 202
BstV1I GCAGC 2 cut(s) 95, 104
BstXI CCANNNNNNTGG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 379, 406
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 146, 211, 262
Cac8I GCNNGC 6 cut(s) 202, 212, 234, 380, 384, 388
CfoI GCGC 2 cut(s) 202, 204
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 2 cut(s) 206, 235
Csp6I GTAC 2 cut(s) 43, 134
CviAII CATG 6 cut(s) 172, 178, 233, 237, 310, 416
CviJI RGCY 4 cut(s) 95, 295, 336, 350
CviKI_1 RGCY 4 cut(s) 95, 295, 336, 350
CviQI GTAC 2 cut(s) 43, 134
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 158, 170
EcoO109I RGGNCCY 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 314
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 6 cut(s) 175, 181, 236, 240, 313, 419
FaiI YATR 8 cut(s) 173, 179, 234, 238, 311, 369, 392, 417
FaqI GGGAC 1 cut(s) 179
FatI CATG 6 cut(s) 171, 177, 232, 236, 309, 415
Fnu4HI GCNGC 3 cut(s) 84, 93, 351
FokI GGATG 2 cut(s) 386, 413
Fsp4HI GCNGC 3 cut(s) 84, 93, 351
FspBI CTAG 1 cut(s) 315
GlaI GCGC 2 cut(s) 201, 203
GluI GCNGC 3 cut(s) 84, 93, 351
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 1 cut(s) 350
HgaI GACGC 2 cut(s) 206, 235
HhaI GCGC 2 cut(s) 202, 204
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 6 cut(s) 175, 181, 236, 240, 313, 419
Hin6I GCGC 2 cut(s) 200, 202
HinP1I GCGC 2 cut(s) 200, 202
HinfI GANTC 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 386
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 2 cut(s) 200, 251
HpyAV CCTTC 4 cut(s) 98, 133, 145, 391
HpyCH4V TGCA 4 cut(s) 22, 236, 325, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 89, 92, 238
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 6 cut(s) 175, 181, 236, 240, 313, 419
HspAI GCGC 2 cut(s) 200, 202
LpnPI CCDG 6 cut(s) 84, 148, 170, 268, 281, 317
Lsp1109I GCAGC 2 cut(s) 95, 104
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 257, 410
MboII GAAGA 2 cut(s) 86, 125
MhlI GDGCHC 2 cut(s) 216, 388
MluCI AATT 3 cut(s) 129, 287, 327
MnlI CCTC 3 cut(s) 118, 203, 233
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 176
MvnI CGCG 2 cut(s) 200, 202
MwoI GCNNNNNNNGC 4 cut(s) 28, 89, 92, 238
NlaIII CATG 6 cut(s) 175, 181, 236, 240, 313, 419
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 257, 410
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 2 cut(s) 236, 313
PaeI GCATGC 1 cut(s) 236
PauI GCGCGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 85, 94, 352
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PteI GCGCGC 1 cut(s) 200
RsaI GTAC 2 cut(s) 44, 135
RsaNI GTAC 2 cut(s) 43, 134
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 3 cut(s) 84, 93, 351
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 2 cut(s) 216, 388
SetI ASST 6 cut(s) 20, 97, 129, 156, 195, 320
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 176
SphI GCATGC 1 cut(s) 236
Sse9I AATT 3 cut(s) 129, 287, 327
SsiI CCGC 2 cut(s) 262, 351
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 314
TaqI TCGA 2 cut(s) 6, 195
TasI AATT 3 cut(s) 129, 287, 327
TatI WGTACW 2 cut(s) 42, 133
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 3 cut(s) 153, 211, 262
TseFI GTSAC 2 cut(s) 257, 410
TseI GCWGC 2 cut(s) 83, 92
Tsp45I GTSAC 2 cut(s) 257, 410
TspDTI ATGAA 4 cut(s) 93, 300, 348, 410
TspRI CASTG 3 cut(s) 153, 211, 262
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 327
XceI RCATGY 2 cut(s) 236, 313
XmaJI CCTAGG 1 cut(s) 314
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.