Rmu_sc0001781.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001781.1
OG0017376
Physical Location & Seq
Forward (+)
65146 .. 67775
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001781.1_g000010.1.cds

Sequence Viewer

Length: 732 bp
atgaaaacgaagaagtacaaaaacataaacagagaaagagacccagaagaagaagaagcagctgaaacagaaggtacagatgatgaagttagtgttttgagggacccactggagctgtttggtttggacataatgttgaatatactgagcaaccttgacgcacgcagtggagtactctccctccttgtctgccatgcttggaacggcgttgcttccagtgatcgcctttggagttccaagtgtgaggagttgtggcttgggaaagcacacatgccccggttgttgcaagttcggggattgtcaaggttggccgcttattcattatgtatcgtggatggcaaacgttcacgcataacgagggatgatttgtgcgaccatgtttgggagtttcatttcaacgaggccgcttctaaatactggcgaaggctcgatccttattggaatggcgctggctcccttatgcgccgctactttcatcctgatgggagccaaactgcagatcatggtgatcaagtatggggcggccatgagtgctgttattgcaccgttacaagtcttcttgaaaatggaaaaataagggaacactatgtaaggataaacagatggccgcgaatgtttgtgtccagaaagaaggattggagctgggaaatgtccagtcacctcttttgctactcgagcatcccagactctgataaagcaggcgggactggaccgctttttccagttaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

243

Amino Acids

28.07

Weight (kDa)

6.51

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 610
AciI CCGC 7 cut(s) 312, 405, 466, 522, 608, 702, 713
AclI AACGTT 1 cut(s) 343
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 3 cut(s) 309, 523, 605
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 3 cut(s) 17, 76, 174
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 139, 397, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AluBI AGCT 3 cut(s) 62, 115, 642
AluI AGCT 3 cut(s) 62, 115, 642
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 4 cut(s) 309, 402, 523, 605
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 2 cut(s) 449, 465
AspS9I GGNCC 2 cut(s) 103, 710
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 518, 650
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 2 cut(s) 103, 710
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 71
BccI CCATC 3 cut(s) 329, 476, 597
BceAI ACGGC 1 cut(s) 220
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 450
BisI GCNGC 6 cut(s) 60, 312, 405, 466, 523, 608
BlsI GCNGC 6 cut(s) 61, 313, 406, 467, 524, 609
BmcAI AGTACT 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 103, 710
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 103, 710
BmiI GGNNCC 4 cut(s) 104, 105, 454, 488
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 6 cut(s) 114, 216, 422, 654, 712, 722
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 4 cut(s) 340, 367, 475, 678
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 6 cut(s) 114, 216, 422, 654, 712, 722
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 4 cut(s) 311, 404, 525, 607
BsiHKCI CYCGRG 1 cut(s) 673
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 2 cut(s) 116, 718
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 116, 718
BsnI GGCC 4 cut(s) 311, 404, 525, 607
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 673
Bsp143I GATC 4 cut(s) 220, 430, 499, 508
BspACI CCGC 7 cut(s) 312, 405, 466, 522, 608, 702, 713
BspANI GGCC 4 cut(s) 311, 404, 525, 607
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 610
BspLI GGNNCC 4 cut(s) 104, 105, 454, 488
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 33
BsrI ACTGG 6 cut(s) 114, 216, 422, 654, 712, 722
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 220, 430, 499, 508
Bst4CI ACNGT 1 cut(s) 547
BstC8I GCNNGC 3 cut(s) 163, 451, 700
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 4 cut(s) 340, 367, 475, 678
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 2 cut(s) 449, 465
BstKTI GATC 4 cut(s) 223, 433, 502, 511
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 4 cut(s) 220, 430, 499, 508
BstMWI GCNNNNNNNGC 3 cut(s) 531, 540, 675
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 548
BsuRI GGCC 4 cut(s) 311, 404, 525, 607
BtsCI GGATG 4 cut(s) 340, 367, 475, 678
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 107, 172, 223
Cac8I GCNNGC 3 cut(s) 163, 451, 700
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 2 cut(s) 449, 465
Cfr13I GGNCC 2 cut(s) 103, 710
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 16, 75, 173
CviAII CATG 5 cut(s) 194, 271, 377, 503, 527
CviQI GTAC 3 cut(s) 16, 75, 173
DdeI CTNAG 1 cut(s) 146
DpnI GATC 4 cut(s) 222, 432, 501, 510
DpnII GATC 4 cut(s) 220, 430, 499, 508
DraIII CACNNNGTG 1 cut(s) 167
EaeI YGGCCR 3 cut(s) 309, 523, 605
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 103, 710
Eco88I CYCGRG 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 103
FaeI CATG 5 cut(s) 197, 274, 380, 506, 530
FaqI GGGAC 2 cut(s) 116, 718
FatI CATG 5 cut(s) 193, 270, 376, 502, 526
FauI CCCGC 1 cut(s) 695
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 6 cut(s) 60, 312, 405, 466, 523, 608
FokI GGATG 4 cut(s) 347, 374, 462, 665
Fsp4HI GCNGC 6 cut(s) 60, 312, 405, 466, 523, 608
GlaI GCGC 2 cut(s) 448, 464
GluI GCNGC 6 cut(s) 60, 312, 405, 466, 523, 608
GsaI CCCAGC 1 cut(s) 646
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 4 cut(s) 311, 404, 525, 607
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 449, 465
Hin1II CATG 5 cut(s) 197, 274, 380, 506, 530
Hin6I GCGC 2 cut(s) 447, 463
HinP1I GCGC 2 cut(s) 447, 463
HinfI GANTC 1 cut(s) 686
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 518, 650
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 3 cut(s) 479, 560, 624
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 65, 417, 625
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 286, 497, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 531, 540, 675
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 197, 274, 380, 506, 530
HspAI GCGC 2 cut(s) 447, 463
KflI GGGWCCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 4 cut(s) 220, 430, 499, 508
LmnI GCTCC 4 cut(s) 112, 458, 486, 639
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 687
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 547, 656
MalI GATC 4 cut(s) 222, 432, 501, 510
MboI GATC 4 cut(s) 220, 430, 499, 508
MboII GAAGA 5 cut(s) 22, 59, 62, 65, 548
MlyI GAGTC 1 cut(s) 680
MnlI CCTC 6 cut(s) 93, 191, 238, 351, 394, 671
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 3 cut(s) 531, 540, 675
NciI CCSGG 1 cut(s) 277
NdeII GATC 4 cut(s) 220, 430, 499, 508
NlaIII CATG 5 cut(s) 197, 274, 380, 506, 530
NlaIV GGNNCC 4 cut(s) 104, 105, 454, 488
NmuCI GTSAC 1 cut(s) 656
NspI RCATGY 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 673
PkrI GCNGC 6 cut(s) 61, 313, 406, 467, 524, 609
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 103
Psp1406I AACGTT 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 642
PspN4I GGNNCC 4 cut(s) 104, 105, 454, 488
PspPI GGNCC 2 cut(s) 103, 710
PspPPI RGGWCCY 1 cut(s) 103
PspXI VCTCGAGB 1 cut(s) 673
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 17, 76, 174
RsaNI GTAC 3 cut(s) 16, 75, 173
RseI CAYNNNNRTG 1 cut(s) 480
SatI GCNGC 6 cut(s) 60, 312, 405, 466, 523, 608
Sau3AI GATC 4 cut(s) 220, 430, 499, 508
Sau96I GGNCC 2 cut(s) 103, 710
ScaI AGTACT 1 cut(s) 174
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 1 cut(s) 277
SetI ASST 9 cut(s) 64, 76, 117, 156, 308, 346, 644, 663, 731
SfaNI GCATC 1 cut(s) 687
SfcI CTRYAG 1 cut(s) 495
Sfr274I CTCGAG 1 cut(s) 673
SinI GGWCC 2 cut(s) 103, 710
SlaI CTCGAG 1 cut(s) 673
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
SsiI CCGC 7 cut(s) 312, 405, 466, 522, 608, 702, 713
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 429, 674
TatI WGTACW 2 cut(s) 15, 172
TauI GCSGC 5 cut(s) 314, 407, 468, 525, 610
TscAI CASTG 3 cut(s) 114, 172, 223
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 5 cut(s) 17, 99, 309, 380, 464
TspRI CASTG 3 cut(s) 114, 172, 223
VpaK11BI GGWCC 2 cut(s) 103, 710
XceI RCATGY 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 673
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.