MD13G1227800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017376
Physical Location & Seq
Forward (+)
22285521 .. 22286084
564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1227800.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGTATGGATAACTTTCGTGCAGGCTGCTCCGACATACTGGCAAAATCTCGATCCTTATTGGAACGGCACAGGCCCTCCTATGCGCCGTTACTTCCATCCTGATGGGAGTCTAACTGCAGATGATGGTGATCAAGTGTGGGGCGGACATGAGTGTTGTTATTGTACTGTTACTAGTATTTTTGAAAATGGACAAATCAGGGAACATTATGTAAGGATAAACCGATGGCCCCGAATGTTTGTGTCCAGAAAGCTGGACTGGAGCTGGGAAATGTCCAACGACCTCTGTTGCTACTCCAGCATCACCGACGCAGATAAAACAGGTGGGACTGGACCGCCGTTTCCAGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

118

Amino Acids

13.53

Weight (kDa)

5.14

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 335
AclWI GGATC 1 cut(s) 47
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 185
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 2 cut(s) 253, 264
AluI AGCT 2 cut(s) 253, 264
AlwI GGATC 1 cut(s) 47
AoxI GGCC 2 cut(s) 73, 227
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 3 cut(s) 74, 228, 332
AsuHPI GGTGA 2 cut(s) 140, 295
AvaII GGWCC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 13
BccI CCATC 4 cut(s) 98, 105, 119, 219
BceAI ACGGC 3 cut(s) 72, 82, 322
BclI TGATCA 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 74, 228, 332
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 309
BpmI CTGGAG 2 cut(s) 280, 280
BsaBI GATNNNNATC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse1I ACTGG 4 cut(s) 44, 263, 334, 344
Bse8I GATNNNNATC 1 cut(s) 129
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 129
BseNI ACTGG 4 cut(s) 44, 263, 334, 344
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 2 cut(s) 75, 229
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 2 cut(s) 75, 229
Bsp143I GATC 2 cut(s) 52, 130
BspACI CCGC 2 cut(s) 144, 335
BspANI GGCC 2 cut(s) 75, 229
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 47
BsrI ACTGG 4 cut(s) 44, 263, 334, 344
BssMI GATC 2 cut(s) 52, 130
Bst4CI ACNGT 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 55, 133
BstMBI GATC 2 cut(s) 52, 130
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 13
BstXI CCANNNNNNTGG 2 cut(s) 104, 253
BsuRI GGCC 2 cut(s) 75, 229
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 74, 228, 332
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 149
CviJI RGCY 5 cut(s) 26, 75, 229, 253, 264
CviKI_1 RGCY 5 cut(s) 26, 75, 229, 253, 264
CviQI GTAC 1 cut(s) 165
DpnI GATC 2 cut(s) 54, 132
DpnII GATC 2 cut(s) 52, 130
EciI GGCGGA 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 74
FaeI CATG 1 cut(s) 152
FaiI YATR 5 cut(s) 7, 37, 83, 150, 210
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 268
GsuI CTGGAG 2 cut(s) 280, 280
HaeIII GGCC 2 cut(s) 75, 229
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 109
HphI GGTGA 2 cut(s) 140, 295
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 50, 101, 246
Hpy99I CGWCG 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 22, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 52, 130
LmnI GCTCC 2 cut(s) 34, 261
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 89, 169
MalI GATC 2 cut(s) 54, 132
MboI GATC 2 cut(s) 52, 130
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 56, 300
MnlI CCTC 2 cut(s) 87, 293
MslI CAYNNNNRTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 2 cut(s) 52, 130
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 3 cut(s) 74, 228, 332
PstI CTGCAG 1 cut(s) 121
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 52, 130
Sau96I GGNCC 3 cut(s) 74, 228, 332
SchI GAGTC 1 cut(s) 118
SetI ASST 4 cut(s) 255, 266, 285, 325
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 102
SpeI ACTAGT 1 cut(s) 173
SsiI CCGC 2 cut(s) 144, 335
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 51
TatI WGTACW 1 cut(s) 164
TseI GCWGC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 332
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.