RLG00000009527

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017376
Physical Location & Seq
Forward (+)
54017586 .. 54025877
8292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009527

Sequence Viewer

Length: 762 bp
ATGAAAACGAAGAAGTACAAAAACATAAACAGAGAAAGAGACCCAGAAGAAGAAGAAGCAGCTGAAACAGAAGGTACAGATGATGAAGTTATTGTTTTGAGGGACCCATTGGAGCTGTTTGGTTTGGACATAATGTTGAATATACTGAGCAACCTTGACGCACGCAGCGGAGTACTCTCCCTCCTTGTCTGCCATGCTTGGAACGGCGTTGCTTCCAGTGATCGCCTTTGGAGTTCCAAGTGTGAGGAGTTGTGGCTTGGGAAAGCACACATGCCCCGGTTGTTGCAAGTTCGGGGATTATCGAGGTTGGCCGCTTATTCATTATCTATTGTGGATGGCAAACGTTGTCTGATTGGCCTTTTATTTATCCGTCTGTCACGCATAACGAGGGATGATTTGTGCGACCATGTTTGGGAGTTTCATTTCAACAAGGCCGCTCCTGAATACTGGCGAAGGCTTGATCCTTATTGGAATGGCACTGGCTGCCTTATGCGCCGCTACTTTCATCCTGATGGGAGCCAAACTGCAGATCATGGTGATCAAGTATGGGGCGGCCATGAGTGCTGTTATTGCACCGTTACAAGTCTTCTTGAAAATGGAAAAATAAGGGAACACTATGTAAGGATAAACAGATGGCCGCGAATGTTTGTGTCCAGAAAGAAGGATTGGAGCTGGGAAATGTCCAGTCACCTCTTTTGCTACTCGAGCATCCCAGACTCTGATAAAGCAGGCGGGACTGAACCGCTTTTTCCAGTTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

254

Amino Acids

29.35

Weight (kDa)

6.51

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 43 - 81 4.4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 437
AccII CGCG 1 cut(s) 640
AciI CCGC 8 cut(s) 168, 312, 435, 496, 552, 638, 732, 743
AclI AACGTT 1 cut(s) 343
AclWI GGATC 1 cut(s) 455
AcoI YGGCCR 3 cut(s) 309, 553, 635
AfaI GTAC 3 cut(s) 17, 76, 174
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 3 cut(s) 139, 427, 593
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AluBI AGCT 3 cut(s) 62, 115, 672
AluI AGCT 3 cut(s) 62, 115, 672
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 5 cut(s) 309, 355, 432, 553, 635
ApeKI GCWGC 3 cut(s) 59, 165, 483
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 548, 680
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 71, 177, 470
BccI CCATC 3 cut(s) 329, 506, 627
BceAI ACGGC 1 cut(s) 220
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 8 cut(s) 60, 166, 312, 435, 484, 496, 553, 638
BlsI GCNGC 8 cut(s) 61, 167, 313, 436, 485, 497, 554, 639
BmcAI AGTACT 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 3 cut(s) 104, 105, 518
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 5 cut(s) 216, 452, 484, 684, 752
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 4 cut(s) 340, 397, 505, 708
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 5 cut(s) 216, 452, 484, 684, 752
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 71, 177, 470
BseYI CCCAGC 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 640
BshFI GGCC 5 cut(s) 311, 357, 434, 555, 637
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 2 cut(s) 116, 748
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 116, 748
BsnI GGCC 5 cut(s) 311, 357, 434, 555, 637
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 4 cut(s) 220, 460, 529, 538
BspACI CCGC 8 cut(s) 168, 312, 435, 496, 552, 638, 732, 743
BspANI GGCC 5 cut(s) 311, 357, 434, 555, 637
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 640
BspLI GGNNCC 3 cut(s) 104, 105, 518
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 437
BsrI ACTGG 5 cut(s) 216, 452, 484, 684, 752
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 220, 460, 529, 538
Bst4CI ACNGT 1 cut(s) 577
BstAPI GCANNNNNTGC 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 163, 730
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 4 cut(s) 340, 397, 505, 708
BstFNI CGCG 1 cut(s) 640
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 4 cut(s) 223, 463, 532, 541
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 4 cut(s) 220, 460, 529, 538
BstMWI GCNNNNNNNGC 5 cut(s) 483, 492, 561, 570, 705
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 640
BstV1I GCAGC 3 cut(s) 71, 177, 470
BstV2I GAAGAC 1 cut(s) 578
BsuRI GGCC 5 cut(s) 311, 357, 434, 555, 637
BtsCI GGATG 4 cut(s) 340, 397, 505, 708
BtsIMutI CAGTG 2 cut(s) 223, 477
Cac8I GCNNGC 2 cut(s) 163, 730
CaiI CAGNNNCTG 1 cut(s) 719
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 16, 75, 173
CviAII CATG 5 cut(s) 194, 271, 407, 533, 557
CviQI GTAC 3 cut(s) 16, 75, 173
DdeI CTNAG 1 cut(s) 146
DpnI GATC 4 cut(s) 222, 462, 531, 540
DpnII GATC 4 cut(s) 220, 460, 529, 538
EaeI YGGCCR 3 cut(s) 309, 553, 635
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 103
FaeI CATG 5 cut(s) 197, 274, 410, 536, 560
FaqI GGGAC 2 cut(s) 116, 748
FatI CATG 5 cut(s) 193, 270, 406, 532, 556
FauI CCCGC 1 cut(s) 725
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 8 cut(s) 60, 166, 312, 435, 484, 496, 553, 638
FokI GGATG 4 cut(s) 347, 404, 492, 695
Fsp4HI GCNGC 8 cut(s) 60, 166, 312, 435, 484, 496, 553, 638
GlaI GCGC 1 cut(s) 494
GluI GCNGC 8 cut(s) 60, 166, 312, 435, 484, 496, 553, 638
GsaI CCCAGC 1 cut(s) 676
HaeIII GGCC 5 cut(s) 311, 357, 434, 555, 637
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 495
Hin1II CATG 5 cut(s) 197, 274, 410, 536, 560
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HinfI GANTC 1 cut(s) 716
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 548, 680
Hpy188I TCNGA 2 cut(s) 351, 721
Hpy188III TCNNGA 4 cut(s) 440, 509, 590, 654
HpyAV CCTTC 3 cut(s) 65, 447, 655
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 286, 527, 573
HpyF10VI GCNNNNNNNGC 5 cut(s) 483, 492, 561, 570, 705
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 197, 274, 410, 536, 560
HspAI GCGC 1 cut(s) 493
KflI GGGWCCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 4 cut(s) 220, 460, 529, 538
LmnI GCTCC 4 cut(s) 112, 442, 516, 669
Lsp1109I GCAGC 3 cut(s) 71, 177, 470
LweI GCATC 1 cut(s) 717
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 3 cut(s) 375, 577, 686
MalI GATC 4 cut(s) 222, 462, 531, 540
MbiI CCGCTC 1 cut(s) 437
MboI GATC 4 cut(s) 220, 460, 529, 538
MboII GAAGA 5 cut(s) 22, 59, 62, 65, 578
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 6 cut(s) 93, 191, 238, 297, 381, 701
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 2 cut(s) 62, 168
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 640
MwoI GCNNNNNNNGC 5 cut(s) 483, 492, 561, 570, 705
NciI CCSGG 1 cut(s) 277
NdeII GATC 4 cut(s) 220, 460, 529, 538
NlaIII CATG 5 cut(s) 197, 274, 410, 536, 560
NlaIV GGNNCC 3 cut(s) 104, 105, 518
NmuCI GTSAC 2 cut(s) 375, 686
NspI RCATGY 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 703
PkrI GCNGC 8 cut(s) 61, 167, 313, 436, 485, 497, 554, 639
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PpuMI RGGWCCY 1 cut(s) 103
Psp1406I AACGTT 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 104, 105, 518
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PspXI VCTCGAGB 1 cut(s) 703
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 17, 76, 174
RsaNI GTAC 3 cut(s) 16, 75, 173
RseI CAYNNNNRTG 1 cut(s) 510
SatI GCNGC 8 cut(s) 60, 166, 312, 435, 484, 496, 553, 638
Sau3AI GATC 4 cut(s) 220, 460, 529, 538
Sau96I GGNCC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 174
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 277
SetI ASST 9 cut(s) 64, 76, 117, 156, 308, 346, 674, 693, 761
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 703
SinI GGWCC 1 cut(s) 103
SlaI CTCGAG 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SsiI CCGC 8 cut(s) 168, 312, 435, 496, 552, 638, 732, 743
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 302, 704
TatI WGTACW 2 cut(s) 15, 172
TauI GCSGC 5 cut(s) 314, 437, 498, 555, 640
TscAI CASTG 2 cut(s) 223, 484
TseFI GTSAC 2 cut(s) 375, 686
TseI GCWGC 3 cut(s) 59, 165, 483
Tsp45I GTSAC 2 cut(s) 375, 686
TspDTI ATGAA 5 cut(s) 17, 99, 309, 410, 494
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 223, 484
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 703
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.