Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

42613951 .. 42617256

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0349300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCAACAGAAAGTGGAAAGAAGAACCAATTTTTAGGAGGCAATAATAGCAGTCAAAAGAGAGGACAACGAATGCTTAATGATCAAAATTTGACTACTCTTTCTAACAAGACCATGGATTGTAGAAGAAAATCAAGAAGATGGAGAGAAGTATCTGAGACATTGATCATCCAAGAGAATCAGAGTCAGACTTGCAGCAGCAATGATCAAAATGGGATGTCAACAAACAGTGGAAAAAGGAAACTAAGAAGAGTGTCAGAAAGTGATCTTGCTAATATGAGCATGGATTGTCGAAGAAAATCAAGAAGGTGGAGAGAAGCATCTAAGCCAGTATTAATAGAAAAGAATCAGACTTCCGAGAGTAATGATGAAAATGGCGATGCATCTAACTATTGTGGTCAAGGAAGTAGAAATGATCAACAAAATTCTGACGTGCTTCCCCATGAAAATTCAGATGCTTATAGTACATATATGATAGGGCTGATTGTGAAATATGAGGACTCTGGAGACAACGTCTGTAATTGTACTTATTGCGGTGCATACTTTTGGCACGAAGAAGCTATAAAACAATCATCTATAAATGCGCAACTCATATATACAAATTGCTGTAAGAAAGGACAGATTAAGCTTCCACAACCTAGACCAACTCCTAATTTTCTTAGAACATTATTGAATGACAAACATTTTAAAGAAAATATTCTGAGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

236

Amino Acids

26.99

Weight (kDa)

9.03

Isoelectric Point (pI)

62.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	709
Acc16I	TGCGCA	1 cut(s)	585
AciI	CCGC	1 cut(s)	534
AcsI	RAATTY	3 cut(s)	88, 424, 448
AfaI	GTAC	2 cut(s)	466, 526
AgsI	TTSAA	1 cut(s)	673
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	2 cut(s)	560, 628
AluI	AGCT	2 cut(s)	560, 628
Alw26I	GTCTC	2 cut(s)	152, 501
ApeKI	GCWGC	2 cut(s)	195, 198
ApoI	RAATTY	3 cut(s)	88, 424, 448
AseI	ATTAAT	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	207, 210
BccI	CCATC	1 cut(s)	135
BclI	TGATCA	4 cut(s)	82, 165, 205, 415
BcoDI	GTCTC	2 cut(s)	152, 501
BfaI	CTAG	1 cut(s)	639
BisI	GCNGC	2 cut(s)	196, 199
BlsI	GCNGC	2 cut(s)	197, 200
BmgBI	CACGTC	1 cut(s)	433
BmsI	GCATC	4 cut(s)	329, 370, 392, 445
BpmI	CTGGAG	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	168, 222
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	147, 692
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	207, 210
BsmAI	GTCTC	2 cut(s)	152, 501
BsmI	GAATGC	1 cut(s)	78
Bsp143I	GATC	5 cut(s)	82, 165, 205, 265, 415
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	534
BspCNI	CTCAG	2 cut(s)	148, 693
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	5 cut(s)	82, 165, 205, 265, 415
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	244
BstDEI	CTNAG	5 cut(s)	156, 245, 324, 659, 701
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	168, 222
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	5 cut(s)	85, 168, 208, 268, 418
BstMAI	GTCTC	2 cut(s)	152, 501
BstMBI	GATC	5 cut(s)	82, 165, 205, 265, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	207, 210
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	168, 222
BtsIMutI	CAGTG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	465, 525
CviAII	CATG	3 cut(s)	115, 283, 443
CviJI	RGCY	4 cut(s)	328, 481, 560, 628
CviKI_1	RGCY	4 cut(s)	328, 481, 560, 628
CviQI	GTAC	2 cut(s)	465, 525
DdeI	CTNAG	5 cut(s)	156, 245, 324, 659, 701
DpnI	GATC	5 cut(s)	84, 167, 207, 267, 417
DpnII	GATC	5 cut(s)	82, 165, 205, 265, 415
DraI	TTTAAA	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	118, 286, 446
FatI	CATG	3 cut(s)	114, 282, 442
FbaI	TGATCA	4 cut(s)	82, 165, 205, 415
Fnu4HI	GCNGC	2 cut(s)	196, 199
FokI	GGATG	2 cut(s)	155, 229
Fsp4HI	GCNGC	2 cut(s)	196, 199
FspBI	CTAG	1 cut(s)	639
FspI	TGCGCA	1 cut(s)	585
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	196, 199
GsuI	CTGGAG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	3 cut(s)	118, 286, 446
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	2 cut(s)	6, 222
HindII	GTYRAC	2 cut(s)	6, 222
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	4 cut(s)	178, 184, 346, 500
Hpy166II	GTNNAC	2 cut(s)	6, 222
Hpy188I	TCNGA	9 cut(s)	157, 183, 189, 259, 351, 358, 430, 454, 702
Hpy188III	TCNNGA	3 cut(s)	135, 303, 504
Hpy8I	GTNNAC	2 cut(s)	6, 222
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	432, 513
HpyCH4V	TGCA	3 cut(s)	195, 383, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	5 cut(s)	156, 245, 324, 659, 701
HpySE526I	ACGT	2 cut(s)	432, 513
Hsp92II	CATG	3 cut(s)	118, 286, 446
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	4 cut(s)	82, 165, 205, 415
Kzo9I	GATC	5 cut(s)	82, 165, 205, 265, 415
LpnPI	CCDG	2 cut(s)	342, 489
Lsp1109I	GCAGC	2 cut(s)	207, 210
LweI	GCATC	4 cut(s)	329, 370, 392, 445
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	2 cut(s)	432, 513
MalI	GATC	5 cut(s)	84, 167, 207, 267, 417
MboI	GATC	5 cut(s)	82, 165, 205, 265, 415
MboII	GAAGA	6 cut(s)	34, 138, 150, 261, 306, 566
MluCI	AATT	7 cut(s)	29, 88, 424, 448, 520, 601, 652
MlyI	GAGTC	2 cut(s)	193, 494
MnlI	CCTC	3 cut(s)	32, 56, 490
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	4 cut(s)	78, 335, 624, 687
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	5 cut(s)	82, 165, 205, 265, 415
NlaIII	CATG	3 cut(s)	118, 286, 446
NsbI	TGCGCA	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	385
PctI	GAATGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	178, 346
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	197, 200
PleI	GAGTC	2 cut(s)	192, 494
PpsI	GAGTC	2 cut(s)	192, 494
PshBI	ATTAAT	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	466, 526
RsaNI	GTAC	2 cut(s)	465, 525
SaqAI	TTAA	4 cut(s)	78, 335, 624, 687
SatI	GCNGC	2 cut(s)	196, 199
Sau3AI	GATC	5 cut(s)	82, 165, 205, 265, 415
SchI	GAGTC	2 cut(s)	193, 494
SetI	ASST	6 cut(s)	311, 435, 516, 562, 630, 640
SfaNI	GCATC	4 cut(s)	329, 370, 392, 445
Sse9I	AATT	7 cut(s)	29, 88, 424, 448, 520, 601, 652
SsiI	CCGC	1 cut(s)	534
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	435, 516
TaqI	TCGA	1 cut(s)	292
TasI	AATT	7 cut(s)	29, 88, 424, 448, 520, 601, 652
TatI	WGTACW	2 cut(s)	464, 524
TfiI	GAWTC	2 cut(s)	178, 346
Tru1I	TTAA	4 cut(s)	78, 335, 624, 687
Tru9I	TTAA	4 cut(s)	78, 335, 624, 687
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	195, 198
TspDTI	ATGAA	2 cut(s)	384, 459
TspRI	CASTG	1 cut(s)	235
Tth111I	GACNNNGTC	1 cut(s)	512
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	3 cut(s)	88, 424, 448
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	1 cut(s)	639
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.