Rorug04G0379900

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001049
Physical Location & Seq
Forward (+)
55086777 .. 55087070
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0379900.1

Sequence Viewer

Length: 294 bp
ATGGAAGACACAGGTACTGAGTTTCCAGGCTTCCAAACTTGTGCACACAAGGATGACAGTATTTTCAGAAGGCGGTTGAGCCGGTTGCAACGACGAGCTCCTTATCCTCTTCAGCTGATTAAGCAGCCTAATAATAACAATGCCAGCTCTTCTGGTTGCACCAGCAGCTCGAATAATTCTTCTTCTTCTTCTTTGAATTCATTCATCTATCAGAGTAAAGATCCTATCCCACTACTCTCCCCTCTAGTATTGCCTTCTTTGCTTGAATCTGCCTGCATTCAACAAGTAAATTAA

Protein Analysis

97

Amino Acids

10.7

Weight (kDa)

8.59

Isoelectric Point (pI)

89.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 16
AgsI TTSAA 3 cut(s) 196, 266, 281
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 4 cut(s) 98, 115, 147, 168
AluI AGCT 4 cut(s) 98, 115, 147, 168
Alw21I GWGCWC 2 cut(s) 46, 100
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 124, 165
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 46, 100
BbvI GCAGC 2 cut(s) 136, 177
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 245
BisI GCNGC 2 cut(s) 125, 166
BlsI GCNGC 2 cut(s) 126, 167
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 81
BseBI CCWGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 2 cut(s) 136, 177
BsiHKAI GWGCWC 2 cut(s) 46, 100
BsiSI CCGG 1 cut(s) 82
BsmI GAATGC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 46, 100
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 114, 154
BstC8I GCNNGC 2 cut(s) 145, 274
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 121, 165, 259
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 136, 177
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 145, 274
CaiI CAGNNNCTG 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 81
Csp6I GTAC 1 cut(s) 15
CviJI RGCY 7 cut(s) 30, 81, 98, 115, 127, 147, 168
CviKI_1 RGCY 7 cut(s) 30, 81, 98, 115, 127, 147, 168
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 114, 154
EarI CTCTTC 2 cut(s) 114, 154
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 125, 166
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 125, 166
FspBI CTAG 1 cut(s) 245
GluI GCNGC 2 cut(s) 125, 166
HapII CCGG 1 cut(s) 82
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 68, 213
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 2 cut(s) 63, 264
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 44, 88, 159, 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 165, 259
HpyF3I CTNAG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 7 cut(s) 12, 39, 95, 138, 157, 175, 286
Lsp1109I GCAGC 2 cut(s) 136, 177
MaeI CTAG 1 cut(s) 245
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 7 cut(s) 17, 101, 141, 171, 174, 177, 180
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 46, 100
MluCI AATT 3 cut(s) 175, 196, 289
MnlI CCTC 2 cut(s) 117, 252
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 120, 292
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 121, 165, 259
NdeII GATC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 154
PctI GAATGC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 126, 167
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 120, 292
SatI GCNGC 2 cut(s) 125, 166
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 46, 100
SetI ASST 5 cut(s) 16, 100, 117, 149, 170
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 3 cut(s) 175, 196, 289
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 175, 196, 289
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 120, 292
Tru9I TTAA 2 cut(s) 120, 292
TseI GCWGC 2 cut(s) 124, 165
TspDTI ATGAA 2 cut(s) 189, 193
VneI GTGCAC 1 cut(s) 42
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.