Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

31236388 .. 31237053

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGGGGGATCGAGGAAGATGCATGTAGGCTGTTCACGCATGACATCTTCATTATGATCAAGTCACAAATCATGTTCGAGAGGAGGTTTGTTTTAGTGCAAAAGGTACCCTTTCCTATCAATGACACAGTGATATTCTATCTTGCCCAATATGACAGGCCTGAACGACGGTGGTGTGTTGAGTTCCATGGTGACCCGGAAAACCCAAAGTGGCAATGCTCTTGCAAACTATTTGAATCTGATGGTATTCCTTGCAGTCACATTTTCTGTGTAATGAAAGATCAGCTTCTGTCCAGATATCCCAAGAGTTTGATAAGCAAACGGTGGACAAAGGCTGTGGGTGATTCAACAGTTGCACCAAAACTGAAGGTCCCCAGTCATGACAAGTCAGCACAGGTGGCCAGGTATTCTGCCCTCATATCAGAAGCAGCCAAAGCATGCTTAAACTACTCATTTTCAGAAGAAGGATTCAAGGTGGGAATGAATGAATTTGCAAGGCTGGTTCAAACCTCAAGAGAATTCAACACAGTTCCGCCTACGGACACATCAAATGTGCCTCTGAGTAGCAATGTTGTGAAGGACCCAAAAGTATCACGAACGAAGGGGATGCCTTCTAATCCTGCAACAAACCCAGAGAATGGGAAGAGCGAGCAGCGGCTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

221

Amino Acids

25.18

Weight (kDa)

8.88

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	2 cut(s)	533, 655
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	488, 518
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	5 cut(s)	236, 348, 472, 506, 523
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
AlwI	GGATC	1 cut(s)	17
AlwNI	CAGNNNCTG	2 cut(s)	289, 658
AoxI	GGCC	2 cut(s)	158, 399
ApeKI	GCWGC	2 cut(s)	428, 652
ApoI	RAATTY	2 cut(s)	488, 518
Asp718I	GGTACC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	370, 580
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	203, 353
AvaII	GGWCC	2 cut(s)	370, 580
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	3 cut(s)	36, 589, 623
BciT130I	CCWGG	1 cut(s)	403
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	429, 653, 656
BlsI	GCNGC	3 cut(s)	430, 654, 657
Bme1390I	CCNGG	2 cut(s)	197, 403
Bme18I	GGWCC	2 cut(s)	370, 580
BmgT120I	GGNCC	2 cut(s)	370, 580
BmiI	GGNNCC	3 cut(s)	108, 372, 582
BmrFI	CCNGG	2 cut(s)	197, 403
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	10, 597
BmuI	ACTGGG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	221, 574
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	2 cut(s)	221, 574
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	160, 401
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	160, 401
Bsp143I	GATC	3 cut(s)	9, 57, 280
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	2 cut(s)	533, 655
BspANI	GGCC	2 cut(s)	160, 401
BspCNI	CTCAG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	108, 372, 582
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	638
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	2 cut(s)	221, 574
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	9, 57, 280
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	5 cut(s)	130, 171, 324, 352, 529
Bst6I	CTCTTC	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	439, 650
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	612
BstKTI	GATC	3 cut(s)	12, 60, 283
BstMBI	GATC	3 cut(s)	9, 57, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 398, 434
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	2 cut(s)	27, 441
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	195, 401
BstV1I	GCAGC	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	160, 401
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	439, 650
CaiI	CAGNNNCTG	2 cut(s)	289, 658
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	370, 580
Csp6I	GTAC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	6 cut(s)	24, 41, 73, 188, 380, 438
CviJI	RGCY	8 cut(s)	31, 160, 286, 335, 401, 431, 499, 658
CviKI_1	RGCY	8 cut(s)	31, 160, 286, 335, 401, 431, 499, 658
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	11, 59, 282
DpnII	GATC	3 cut(s)	9, 57, 280
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
EciI	GGCGGA	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	370, 580
Eco57I	CTGAAG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	370, 580
EcoO65I	GGTNACC	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	401
EcoRV	GATATC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	6 cut(s)	27, 44, 76, 191, 383, 441
FaiI	YATR	9 cut(s)	25, 42, 56, 74, 153, 189, 381, 419, 439
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 270, 302
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	6 cut(s)	23, 40, 72, 187, 379, 437
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	429, 653, 656
FokI	GGATG	1 cut(s)	619
Fsp4HI	GCNGC	3 cut(s)	429, 653, 656
GluI	GCNGC	3 cut(s)	429, 653, 656
HaeIII	GGCC	2 cut(s)	160, 401
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	6 cut(s)	27, 44, 76, 191, 383, 441
HinfI	GANTC	3 cut(s)	236, 344, 468
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	203, 353
Hpy166II	GTNNAC	2 cut(s)	36, 327
Hpy188I	TCNGA	4 cut(s)	241, 424, 460, 561
Hpy188III	TCNNGA	5 cut(s)	79, 294, 380, 513, 594
Hpy8I	GTNNAC	2 cut(s)	36, 327
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	5 cut(s)	361, 458, 571, 595, 621
HpyCH4III	ACNGT	5 cut(s)	130, 171, 324, 352, 529
HpyCH4V	TGCA	7 cut(s)	23, 100, 225, 255, 356, 494, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 398, 434
HpyF3I	CTNAG	1 cut(s)	560
Hsp92II	CATG	6 cut(s)	27, 44, 76, 191, 383, 441
KpnI	GGTACC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	9, 57, 280
LguI	GCTCTTC	1 cut(s)	638
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	10, 597
MaeIII	GTNAC	3 cut(s)	63, 191, 257
MalI	GATC	3 cut(s)	11, 59, 282
MboI	GATC	3 cut(s)	9, 57, 280
MboII	GAAGA	4 cut(s)	29, 40, 473, 655
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	2 cut(s)	488, 518
MluNI	TGGCCA	1 cut(s)	401
MnlI	CCTC	6 cut(s)	7, 75, 78, 425, 520, 567
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	197, 403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	37, 398, 434
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	9, 57, 280
NlaIII	CATG	6 cut(s)	27, 44, 76, 191, 383, 441
NlaIV	GGNNCC	3 cut(s)	108, 372, 582
NmuCI	GTSAC	3 cut(s)	63, 191, 257
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	27, 441
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	236, 344, 468
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	430, 654, 657
PpuMI	RGGWCCY	2 cut(s)	370, 580
Psp5II	RGGWCCY	2 cut(s)	370, 580
Psp6I	CCWGG	1 cut(s)	401
PspEI	GGTNACC	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	108, 372, 582
PspPI	GGNCC	2 cut(s)	370, 580
PspPPI	RGGWCCY	2 cut(s)	370, 580
PstNI	CAGNNNCTG	2 cut(s)	289, 658
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	3 cut(s)	429, 653, 656
Sau3AI	GATC	3 cut(s)	9, 57, 280
Sau96I	GGNCC	2 cut(s)	370, 580
ScrFI	CCNGG	2 cut(s)	197, 403
SetI	ASST	8 cut(s)	89, 108, 288, 372, 399, 407, 477, 512
SfaNI	GCATC	2 cut(s)	10, 597
SinI	GGWCC	2 cut(s)	370, 580
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	2 cut(s)	488, 518
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	533, 655
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	195, 401
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	5 cut(s)	130, 171, 324, 352, 529
TaqI	TCGA	2 cut(s)	12, 78
TasI	AATT	2 cut(s)	488, 518
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	3 cut(s)	236, 344, 468
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	3 cut(s)	63, 191, 257
TseI	GCWGC	2 cut(s)	428, 652
Tsp45I	GTSAC	3 cut(s)	63, 191, 257
TspDTI	ATGAA	4 cut(s)	40, 290, 497, 501
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	370, 580
XapI	RAATTY	2 cut(s)	488, 518
XceI	RCATGY	2 cut(s)	27, 441
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.