Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

7791793 .. 7794643

Gene Structure 2851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGAACTTGCACCGCACGACCCGGGTTCAAAGCAGCTCCGACCCGACGAACCAGAGCTCGACCTCTACACCATCCCAAGCCACTCTAGCTGGTTTTTGTGGGATGAGATTCATGAAACCGAGAGAATTGCTTTGAAGGAGTTTTTTGATGGGAGGTCTATATCAAGAACACCAAAGGTGTACAAAGAATATAGGGACTTTATTATTAACAAGTATAGAGAAGAACCAGCTAGAAAACTCACATTCACCGAGATTCGAAAGTCACTTGTGGGTGATGTTACTTTGCTGCACAAGGTCTTTAGTTTCTTGGAAAAATGGGGGTTGATTAATTTTGGGGCAAGTTCGGGTGGTGGCAATGACGGTTTTGGTACCTGGGGTGAGGCCAGGACTACGGTTAAGGTTGAGGAGGGAGTCCCAAATGCGGTCCGAGTGGGTGCAAATCCAAGTGATTCTAAGCCCCTTTCGGCCACACCTACGGTAGTGGACAGTGGGGGTGGAAGTGCGAGTAGAATTACATTGCCTCCATTGGCATCATACTCGAATGTTTTTGGTGATTTGAAGAAAGAGAGCTTGGTTTGTGGTAATTGTGGCGGACATTGTGATTCTGGACACTACAAGTATAATAAGGGTGATTTTCTACTTTGCACAAAGTGTTTTGAAAATGGAAACTATGGGGAGAACAAATTGAAGGAAGATTTCAAGTACAACGAGCCAGTTGAAAAGAGTAGTAATATTGGAGTTGAGTGGACTGAATCAGAAACTTTACTTCTTTTAGATTCAGTTGCAAAGCATGGAGATGATTGGGATCGTGTTGCTCAAAATGTTAAGACCAAGACCAAAGTTGATTGTATTGCTAAGCTTATTGATCTGCCTTTTGGGGAGGTTGTGTTGGGTTCTGGTCACAGAAAAGGTAACCATAGTGGCTTTAGTGGCAACTTGAGCGGTTCAAAACAAGGTCAGTTATCTTCATCTGAGTGTCAAGAGACTATCAAAACCAAGAGTCAGAGCCATGAGCAGACAAATGACAGTGAGCAGAATGGAGATACTGCAAACCAAGGTCCCCCTTTGAAAAAACAACGCGTCGCTTCCCTTTCGGATGCTAGTAGTTCACTCATTACACAGGTATCTGCCTTGTCAACCTTGGTTGGTCCGCATATTACAGCTTCTGCAGCTGAGGCTGCTGTTAATGCACTTTGTGAGGAAACCTCATGTTCAAAGGAGATATTTAATGCTGAAGACGATTGTGTTACTAATGGCTTGCAGTCTCCCGCTATAAATTGTGAGACAGAGAGAGTCCTTCAACTTGAAGATTCAGAGATGAAGGAAAGGCCAACTGAATCAGCGGGTCAGGATGCGTTTATAAAAAAAGATGACATACCTCCAACTTTGCAAATTAGAGCTGCCATCGCAACAGGTCTTGGAGCAGCTGCTGCTCGTGCCAAATTACTGGCTGATCAGGAGGATAGAGAGATTGAACATCTTTTGGGAACCATAATAGGGACACAGATGGAGAAGTTGCACTGCAAAATCAAGACCGTCGAAGAACTGGAGCTGCTTATGGAGAAGGAATACACAGAAATGGAAGAAGAAGAAGATTCTCTGCTAGAAGAGCGAATTGACATGATACAAAAGACACTCGACTCCGGGGTACCTAGATGGAGGGATCATCCTCCTGTAAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

561

Amino Acids

61.69

Weight (kDa)

5.05

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	34 - 111	3.9e-25	SWIRM domain
Myb_DNA-binding	PF00249	248 - 286	2.8e-09	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	471 - 546	8.8e-18	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1361
Acc65I	GGTACC	2 cut(s)	368, 1648
AccB1I	GGYRCC	2 cut(s)	368, 1648
AccBSI	CCGCTC	1 cut(s)	942
AccII	CGCG	1 cut(s)	1080
AciI	CCGC	7 cut(s)	14, 422, 591, 942, 1151, 1269, 1343
AclWI	GGATC	2 cut(s)	813, 1671
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	1254
AdeI	CACNNNGTG	2 cut(s)	651, 1196
AfaI	GTAC	4 cut(s)	182, 370, 704, 1650
AfiI	CCNNNNNNNGG	2 cut(s)	421, 1497
AflIII	ACRYGT	1 cut(s)	1078
AjnI	CCWGG	2 cut(s)	371, 383
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	977, 1269, 1277
AlwI	GGATC	2 cut(s)	813, 1671
AlwNI	CAGNNNCTG	2 cut(s)	1166, 1430
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	381, 465, 1328
ApeKI	GCWGC	9 cut(s)	34, 286, 1169, 1178, 1400, 1424, 1427, 1430, 1552
AseI	ATTAAT	1 cut(s)	327
Asp718I	GGTACC	2 cut(s)	368, 1648
AspS9I	GGNCC	3 cut(s)	424, 1058, 1148
AsuC2I	CCSGG	3 cut(s)	23, 24, 1645
AsuHPI	GGTGA	5 cut(s)	238, 284, 389, 563, 641
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	424, 1058, 1148
BaeI	ACNNNNGTAYC	2 cut(s)	1107, 1140
BanI	GGYRCC	2 cut(s)	368, 1648
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	1434
BbsI	GAAGAC	1 cut(s)	1242
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	1173
BbvI	GCAGC	9 cut(s)	46, 273, 1165, 1181, 1387, 1414, 1417, 1436, 1539
BccI	CCATC	5 cut(s)	80, 143, 1412, 1501, 1650
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 519, 553
BciT130I	CCWGG	2 cut(s)	373, 385
BclI	TGATCA	1 cut(s)	1453
BcnI	CCSGG	3 cut(s)	23, 24, 1645
BcoDI	GTCTC	3 cut(s)	977, 1269, 1277
BfaI	CTAG	5 cut(s)	87, 231, 1101, 1604, 1653
BfmI	CTRYAG	1 cut(s)	1167
BisI	GCNGC	9 cut(s)	35, 287, 1170, 1179, 1401, 1425, 1428, 1431, 1553
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	9 cut(s)	36, 288, 1171, 1180, 1402, 1426, 1429, 1432, 1554
Bme1390I	CCNGG	5 cut(s)	23, 24, 373, 385, 1645
Bme18I	GGWCC	3 cut(s)	424, 1058, 1148
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	424, 1058, 1148
BmiI	GGNNCC	4 cut(s)	370, 1060, 1489, 1650
BmrFI	CCNGG	5 cut(s)	23, 24, 373, 385, 1645
BmsI	GCATC	3 cut(s)	539, 1087, 1342
BpiI	GAAGAC	1 cut(s)	1242
BplI	GAGNNNNNCTC	2 cut(s)	1190, 1222
BpmI	CTGGAG	1 cut(s)	1568
Bpu10I	CCTNAGC	1 cut(s)	1173
Bpu1102I	GCTNAGC	1 cut(s)	855
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	958
BpuMI	CCSGG	3 cut(s)	23, 24, 1645
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	5 cut(s)	22, 372, 1054, 1140, 1644
BsaXI	ACNNNNNCTCC	4 cut(s)	505, 535, 872, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 1497
Bse1I	ACTGG	3 cut(s)	713, 1452, 1551
Bse3DI	GCAATG	2 cut(s)	361, 515
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	373, 385
BseDI	CCNNGG	5 cut(s)	22, 372, 1054, 1140, 1644
BseGI	GGATG	5 cut(s)	72, 109, 1102, 1357, 1666
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	2 cut(s)	421, 1497
BseMI	GCAATG	2 cut(s)	361, 515
BseMII	CTCAG	2 cut(s)	963, 1164
BseNI	ACTGG	3 cut(s)	713, 1452, 1551
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	9 cut(s)	46, 273, 1165, 1181, 1387, 1414, 1417, 1436, 1539
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	1080
BshFI	GGCC	3 cut(s)	383, 467, 1330
BshNI	GGYRCC	2 cut(s)	368, 1648
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	23, 1644
BslFI	GGGAC	4 cut(s)	209, 398, 1044, 1513
BslI	CCNNNNNNNGG	2 cut(s)	421, 1497
BsmAI	GTCTC	3 cut(s)	977, 1269, 1277
BsmFI	GGGAC	4 cut(s)	209, 398, 1044, 1513
BsnI	GGCC	3 cut(s)	383, 467, 1330
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	805, 865, 1453, 1663
Bsp1720I	GCTNAGC	1 cut(s)	855
BspACI	CCGC	7 cut(s)	14, 422, 591, 942, 1151, 1269, 1343
BspANI	GGCC	3 cut(s)	383, 467, 1330
BspCNI	CTCAG	2 cut(s)	964, 1165
BspFNI	CGCG	1 cut(s)	1080
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	4 cut(s)	370, 1060, 1489, 1650
BspMAI	CTGCAG	1 cut(s)	1171
BspPI	GGATC	2 cut(s)	813, 1671
BspQI	GCTCTTC	1 cut(s)	1602
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	2 cut(s)	368, 1648
BsrBI	CCGCTC	1 cut(s)	942
BsrDI	GCAATG	2 cut(s)	361, 515
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	713, 1452, 1551
BssECI	CCNNGG	5 cut(s)	22, 372, 1054, 1140, 1644
BssMI	GATC	4 cut(s)	805, 865, 1453, 1663
BssSI	CACGAG	1 cut(s)	1434
BssT1I	CCWWGG	2 cut(s)	1054, 1140
Bst2BI	CACGAG	1 cut(s)	1434
Bst2UI	CCWGG	2 cut(s)	373, 385
Bst4CI	ACNGT	6 cut(s)	362, 394, 478, 488, 1028, 1537
Bst6I	CTCTTC	1 cut(s)	1602
BstAPI	GCANNNNNTGC	1 cut(s)	1430
BstAUI	TGTACA	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	1259
BstDEI	CTNAG	4 cut(s)	453, 855, 972, 1173
BstEII	GGTNACC	1 cut(s)	911
BstF5I	GGATG	5 cut(s)	72, 109, 1102, 1357, 1666
BstFNI	CGCG	1 cut(s)	1080
BstKTI	GATC	4 cut(s)	808, 868, 1456, 1666
BstMAI	GTCTC	3 cut(s)	977, 1269, 1277
BstMBI	GATC	4 cut(s)	805, 865, 1453, 1663
BstNI	CCWGG	2 cut(s)	373, 385
BstPI	GGTNACC	1 cut(s)	911
BstSCI	CCNGG	5 cut(s)	21, 22, 371, 383, 1643
BstSFI	CTRYAG	1 cut(s)	1167
BstUI	CGCG	1 cut(s)	1080
BstV1I	GCAGC	9 cut(s)	46, 273, 1165, 1181, 1387, 1414, 1417, 1436, 1539
BstV2I	GAAGAC	1 cut(s)	1242
BstXI	CCANNNNNNTGG	1 cut(s)	1447
BsuRI	GGCC	3 cut(s)	383, 467, 1330
BtgZI	GCGATG	1 cut(s)	1390
BtsCI	GGATG	5 cut(s)	72, 109, 1102, 1357, 1666
BtsI	GCAGTG	1 cut(s)	1519
BtsIMutI	CAGTG	3 cut(s)	493, 1033, 1519
Cac8I	GCNNGC	1 cut(s)	1259
CaiI	CAGNNNCTG	2 cut(s)	1166, 1430
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	424, 1058, 1148
Cfr9I	CCCGGG	1 cut(s)	22
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	1 cut(s)	1069
Csp6I	GTAC	4 cut(s)	181, 369, 703, 1649
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	5 cut(s)	113, 791, 1010, 1209, 1621
CviQI	GTAC	4 cut(s)	181, 369, 703, 1649
DdeI	CTNAG	4 cut(s)	453, 855, 972, 1173
DpnI	GATC	4 cut(s)	807, 867, 1455, 1665
DpnII	GATC	4 cut(s)	805, 865, 1453, 1663
DraIII	CACNNNGTG	2 cut(s)	651, 1196
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	1602
EarI	CTCTTC	1 cut(s)	1602
EciI	GGCGGA	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	1054, 1140
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	3 cut(s)	424, 1058, 1148
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	1254
Eco88I	CYCGRG	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoO65I	GGTNACC	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	371, 383
EcoT14I	CCWWGG	2 cut(s)	1054, 1140
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	1054, 1140
FaeI	CATG	5 cut(s)	116, 794, 1013, 1212, 1624
FaqI	GGGAC	4 cut(s)	209, 398, 1044, 1513
FatI	CATG	5 cut(s)	112, 790, 1009, 1208, 1620
FauI	CCCGC	2 cut(s)	1276, 1336
FbaI	TGATCA	1 cut(s)	1453
Fnu4HI	GCNGC	9 cut(s)	35, 287, 1170, 1179, 1401, 1425, 1428, 1431, 1553
FokI	GGATG	5 cut(s)	59, 116, 1109, 1364, 1653
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	9 cut(s)	35, 287, 1170, 1179, 1401, 1425, 1428, 1431, 1553
FspBI	CTAG	5 cut(s)	87, 231, 1101, 1604, 1653
GluI	GCNGC	9 cut(s)	35, 287, 1170, 1179, 1401, 1425, 1428, 1431, 1553
GsuI	CTGGAG	1 cut(s)	1568
HaeIII	GGCC	3 cut(s)	383, 467, 1330
HapII	CCGG	2 cut(s)	23, 1644
HgaI	GACGC	1 cut(s)	1069
Hin1II	CATG	5 cut(s)	116, 794, 1013, 1212, 1624
HincII	GTYRAC	1 cut(s)	1137
HindII	GTYRAC	1 cut(s)	1137
HindIII	AAGCTT	1 cut(s)	857
HpaII	CCGG	2 cut(s)	23, 1644
HphI	GGTGA	5 cut(s)	238, 284, 389, 563, 641
Hpy166II	GTNNAC	5 cut(s)	181, 484, 747, 1109, 1137
Hpy188I	TCNGA	7 cut(s)	41, 428, 757, 973, 1005, 1096, 1315
Hpy188III	TCNNGA	8 cut(s)	113, 165, 606, 980, 1349, 1457, 1531, 1683
Hpy8I	GTNNAC	5 cut(s)	181, 484, 747, 1109, 1137
Hpy99I	CGWCG	3 cut(s)	50, 1085, 1541
HpyAV	CCTTC	5 cut(s)	130, 682, 1307, 1315, 1558
HpyCH4III	ACNGT	6 cut(s)	362, 394, 478, 488, 1028, 1537
HpyF3I	CTNAG	4 cut(s)	453, 855, 972, 1173
Hsp92II	CATG	5 cut(s)	116, 794, 1013, 1212, 1624
KpnI	GGTACC	2 cut(s)	372, 1652
Ksp22I	TGATCA	1 cut(s)	1453
Kzo9I	GATC	4 cut(s)	805, 865, 1453, 1663
LguI	GCTCTTC	1 cut(s)	1602
LmnI	GCTCC	3 cut(s)	42, 1421, 1549
Lsp1109I	GCAGC	9 cut(s)	46, 273, 1165, 1181, 1387, 1414, 1417, 1436, 1539
LweI	GCATC	3 cut(s)	539, 1087, 1342
MaeI	CTAG	5 cut(s)	87, 231, 1101, 1604, 1653
MaeIII	GTNAC	5 cut(s)	261, 277, 899, 911, 1246
MalI	GATC	4 cut(s)	807, 867, 1455, 1665
MbiI	CCGCTC	1 cut(s)	942
MboI	GATC	4 cut(s)	805, 865, 1453, 1663
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	9 cut(s)	126, 328, 510, 583, 683, 1276, 1392, 1442, 1614
MluI	ACGCGT	1 cut(s)	1078
MlyI	GAGTC	4 cut(s)	420, 1009, 1302, 1634
MmeI	TCCRAC	2 cut(s)	64, 1406
MseI	TTAA	6 cut(s)	207, 327, 396, 825, 1185, 1227
MslI	CAYNNNNRTG	3 cut(s)	795, 973, 1577
MspA1I	CMGCKG	3 cut(s)	1172, 1343, 1427
MspI	CCGG	2 cut(s)	23, 1644
MspR9I	CCNGG	5 cut(s)	23, 24, 373, 385, 1645
MvaI	CCWGG	2 cut(s)	373, 385
MvnI	CGCG	1 cut(s)	1080
NciI	CCSGG	3 cut(s)	23, 24, 1645
NdeII	GATC	4 cut(s)	805, 865, 1453, 1663
NlaIII	CATG	5 cut(s)	116, 794, 1013, 1212, 1624
NlaIV	GGNNCC	4 cut(s)	370, 1060, 1489, 1650
NmuCI	GTSAC	2 cut(s)	261, 899
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	1602
PfeI	GAWTC	9 cut(s)	109, 253, 449, 602, 752, 776, 1310, 1337, 1595
PkrI	GCNGC	9 cut(s)	36, 288, 1171, 1180, 1402, 1426, 1429, 1432, 1554
PleI	GAGTC	4 cut(s)	419, 1008, 1301, 1634
PpsI	GAGTC	4 cut(s)	419, 1008, 1301, 1634
PpuMI	RGGWCCY	1 cut(s)	1058
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	1361
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	1058
Psp6I	CCWGG	2 cut(s)	371, 383
PspEI	GGTNACC	1 cut(s)	911
PspGI	CCWGG	2 cut(s)	371, 383
PspN4I	GGNNCC	4 cut(s)	370, 1060, 1489, 1650
PspPI	GGNCC	3 cut(s)	424, 1058, 1148
PspPPI	RGGWCCY	1 cut(s)	1058
PstI	CTGCAG	1 cut(s)	1171
PstNI	CAGNNNCTG	2 cut(s)	1166, 1430
PvuII	CAGCTG	2 cut(s)	1172, 1427
RsaI	GTAC	4 cut(s)	182, 370, 704, 1650
RsaNI	GTAC	4 cut(s)	181, 369, 703, 1649
RseI	CAYNNNNRTG	3 cut(s)	795, 973, 1577
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	1602
SaqAI	TTAA	6 cut(s)	207, 327, 396, 825, 1185, 1227
SatI	GCNGC	9 cut(s)	35, 287, 1170, 1179, 1401, 1425, 1428, 1431, 1553
Sau3AI	GATC	4 cut(s)	805, 865, 1453, 1663
Sau96I	GGNCC	3 cut(s)	424, 1058, 1148
SchI	GAGTC	4 cut(s)	420, 1009, 1302, 1634
ScrFI	CCNGG	5 cut(s)	23, 24, 373, 385, 1645
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	3 cut(s)	539, 1087, 1342
SfcI	CTRYAG	1 cut(s)	1167
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	3 cut(s)	424, 1058, 1148
SmaI	CCCGGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	3 cut(s)	795, 973, 1577
SmlI	CTYRAG	1 cut(s)	937
SmoI	CTYRAG	1 cut(s)	937
Sse9I	AATT	9 cut(s)	126, 328, 510, 583, 683, 1276, 1392, 1442, 1614
SsiI	CCGC	7 cut(s)	14, 422, 591, 942, 1151, 1269, 1343
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	5 cut(s)	87, 231, 1101, 1604, 1653
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	5 cut(s)	21, 22, 371, 383, 1643
StyI	CCWWGG	2 cut(s)	1054, 1140
TaaI	ACNGT	6 cut(s)	362, 394, 478, 488, 1028, 1537
TaqI	TCGA	5 cut(s)	60, 256, 539, 1539, 1638
TasI	AATT	9 cut(s)	126, 328, 510, 583, 683, 1276, 1392, 1442, 1614
TatI	WGTACW	2 cut(s)	180, 702
TfiI	GAWTC	9 cut(s)	109, 253, 449, 602, 752, 776, 1310, 1337, 1595
Tru1I	TTAA	6 cut(s)	207, 327, 396, 825, 1185, 1227
Tru9I	TTAA	6 cut(s)	207, 327, 396, 825, 1185, 1227
TscAI	CASTG	3 cut(s)	493, 1033, 1526
TseFI	GTSAC	2 cut(s)	261, 899
TseI	GCWGC	9 cut(s)	34, 286, 1169, 1178, 1400, 1424, 1427, 1430, 1552
Tsp45I	GTSAC	2 cut(s)	261, 899
TspDTI	ATGAA	4 cut(s)	101, 129, 957, 1334
TspMI	CCCGGG	1 cut(s)	22
TspRI	CASTG	3 cut(s)	493, 1033, 1526
VpaK11BI	GGWCC	3 cut(s)	424, 1058, 1148
VspI	ATTAAT	1 cut(s)	327
XmaI	CCCGGG	1 cut(s)	22
XspI	CTAG	5 cut(s)	87, 231, 1101, 1604, 1653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.