Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

19065628 .. 19069200

Gene Structure 3573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0203500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTGGAGTTTTCGCAATTTGCAGGCTGCAGATTCTCAGGTTGTTTCCTACTATGTGAGGCACTTTGTTCATCAGCACACGCTACTGTCATATGGCAACAAGAATATGTTGCAAACTGGGTTGATTGTGGGAGGCTGGGACAAGTATGAAGGGGGAAAGATTTATGGAGTTCCGCTTGGCGGCACAGTCATAAAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGCCCAAGGACGAAGCGAAGGTGCTGATCTCCGGAAGGGAAGAGCCAGAGGCTCTTCTTTCCCCTGCAATGGATGCTGTAATAAGAGTATTCAAACGTGTCGCTGGATTATCTGAGAGTGCAGGCGAGGCAGAGTTTTCTGGTGCTGCTGGAGTTGCATTCTGTTCCATCCGTTTGTTGGTAGCATCCACACAAGCGATTAATTTAATTGGAAAACAAGGATCATTAATCAAATCTATACAGGAGAGTACCGCTGCTTCTATGCGAGTATTGTCTGGAGAAGAGGTTCCATTTTATGCTGCCTCTGAGATTATGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTTGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

288

Amino Acids

31.14

Weight (kDa)

5.55

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	24 - 99	8.2e-14	Proteasome subunit
KH_1	PF00013	195 - 257	1.7e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	196, 731
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	4 cut(s)	173, 180, 519, 752
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	594, 647
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	517, 684
AfiI	CCNNNNNNNGG	3 cut(s)	179, 337, 445
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	361, 632, 647
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	1 cut(s)	820
AluI	AGCT	1 cut(s)	820
AlwI	GGATC	1 cut(s)	496
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	1 cut(s)	772
ApeKI	GCWGC	5 cut(s)	26, 413, 521, 566, 803
ApoI	RAATTY	2 cut(s)	594, 647
AseI	ATTAAT	2 cut(s)	468, 494
Asp700I	GAANNNNTTC	2 cut(s)	552, 651
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	772
BanI	GGYRCC	2 cut(s)	196, 731
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	5 cut(s)	13, 400, 508, 553, 790
BccI	CCATC	2 cut(s)	443, 835
BclI	TGATCA	1 cut(s)	247
BfaI	CTAG	2 cut(s)	821, 865
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	7 cut(s)	27, 181, 414, 522, 567, 753, 804
BlsI	GCNGC	7 cut(s)	28, 182, 415, 523, 568, 754, 805
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	5 cut(s)	198, 223, 555, 670, 733
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	331, 461
BmuI	ACTGGG	1 cut(s)	126
BpmI	CTGGAG	3 cut(s)	208, 438, 564
Bpu10I	CCTNAGC	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	273, 775
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 337, 445
Bse1I	ACTGG	2 cut(s)	121, 225
Bse3DI	GCAATG	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	273, 775
BseGI	GGATG	4 cut(s)	346, 435, 452, 846
BseLI	CCNNNNNNNGG	3 cut(s)	179, 337, 445
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	4 cut(s)	50, 372, 564, 603
BseNI	ACTGG	2 cut(s)	121, 225
BseXI	GCAGC	5 cut(s)	13, 400, 508, 553, 790
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	774
BshNI	GGYRCC	2 cut(s)	196, 731
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	152, 711
BslI	CCNNNNNNNGG	3 cut(s)	179, 337, 445
BsmFI	GGGAC	2 cut(s)	152, 711
BsmI	GAATGC	2 cut(s)	273, 425
BsnI	GGCC	1 cut(s)	774
Bsp13I	TCCGGA	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	247, 294, 488, 861
BspACI	CCGC	4 cut(s)	173, 180, 519, 752
BspANI	GGCC	1 cut(s)	774
BspCNI	CTCAG	4 cut(s)	49, 373, 565, 604
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	5 cut(s)	198, 223, 555, 670, 733
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	496
BspQI	GCTCTTC	3 cut(s)	303, 327, 810
BspT107I	GGYRCC	2 cut(s)	196, 731
BsrDI	GCAATG	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	121, 225
BssECI	CCNNGG	2 cut(s)	273, 775
BssMI	GATC	4 cut(s)	247, 294, 488, 861
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	273, 775
Bst4CI	ACNGT	4 cut(s)	87, 187, 682, 718
Bst6I	CTCTTC	4 cut(s)	303, 327, 543, 810
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	2 cut(s)	341, 589
BstAUI	TGTACA	1 cut(s)	682
BstC8I	GCNNGC	3 cut(s)	24, 391, 848
BstDEI	CTNAG	4 cut(s)	36, 381, 573, 612
BstF5I	GGATG	4 cut(s)	346, 435, 452, 846
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	250, 297, 491, 864
BstMBI	GATC	4 cut(s)	247, 294, 488, 861
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 341, 395, 422, 589
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	5 cut(s)	13, 400, 508, 553, 790
BsuRI	GGCC	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	346, 435, 452, 846
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	3 cut(s)	24, 391, 848
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	516, 683
CviAII	CATG	1 cut(s)	255
CviQI	GTAC	2 cut(s)	516, 683
DdeI	CTNAG	4 cut(s)	36, 381, 573, 612
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	4 cut(s)	249, 296, 490, 863
DpnII	GATC	4 cut(s)	247, 294, 488, 861
Eam1104I	CTCTTC	4 cut(s)	303, 327, 543, 810
EarI	CTCTTC	4 cut(s)	303, 327, 543, 810
Eco130I	CCWWGG	2 cut(s)	273, 775
EcoO109I	RGGNCCY	1 cut(s)	772
EcoT14I	CCWWGG	2 cut(s)	273, 775
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	273, 775
FaeI	CATG	1 cut(s)	258
FaqI	GGGAC	2 cut(s)	152, 711
FatI	CATG	1 cut(s)	254
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	7 cut(s)	27, 181, 414, 522, 567, 753, 804
FokI	GGATG	4 cut(s)	353, 422, 439, 853
Fsp4HI	GCNGC	7 cut(s)	27, 181, 414, 522, 567, 753, 804
FspBI	CTAG	2 cut(s)	821, 865
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	7 cut(s)	27, 181, 414, 522, 567, 753, 804
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	3 cut(s)	208, 438, 564
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	774
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HinfI	GANTC	3 cut(s)	32, 240, 766
HpaI	GTTAAC	1 cut(s)	678
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	2 cut(s)	382, 574
Hpy188III	TCNNGA	2 cut(s)	300, 543
Hpy8I	GTNNAC	1 cut(s)	678
HpyAV	CCTTC	6 cut(s)	143, 257, 280, 297, 626, 630
HpyCH4III	ACNGT	4 cut(s)	87, 187, 682, 718
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	8 cut(s)	22, 29, 112, 335, 389, 425, 583, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 341, 395, 422, 589
HpyF3I	CTNAG	4 cut(s)	36, 381, 573, 612
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	247, 294, 488, 861
LguI	GCTCTTC	3 cut(s)	303, 327, 810
LmnI	GCTCC	2 cut(s)	227, 668
Lsp1109I	GCAGC	5 cut(s)	13, 400, 508, 553, 790
LweI	GCATC	2 cut(s)	331, 461
MaeI	CTAG	2 cut(s)	821, 865
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	4 cut(s)	249, 296, 490, 863
MboI	GATC	4 cut(s)	247, 294, 488, 861
MboII	GAAGA	4 cut(s)	314, 320, 560, 827
MluCI	AATT	6 cut(s)	16, 469, 474, 594, 647, 711
Mly113I	GGCGCC	1 cut(s)	197
MroI	TCCGGA	1 cut(s)	299
MroXI	GAANNNNTTC	2 cut(s)	552, 651
MseI	TTAA	4 cut(s)	468, 473, 494, 677
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	273, 425
MwoI	GCNNNNNNNGC	5 cut(s)	203, 341, 395, 422, 589
NarI	GGCGCC	1 cut(s)	197
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	247, 294, 488, 861
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	5 cut(s)	198, 223, 555, 670, 733
PciSI	GCTCTTC	3 cut(s)	303, 327, 810
PctI	GAATGC	2 cut(s)	273, 425
PdmI	GAANNNNTTC	2 cut(s)	552, 651
PfeI	GAWTC	3 cut(s)	32, 240, 766
PkrI	GCNGC	7 cut(s)	28, 182, 415, 523, 568, 754, 805
PluTI	GGCGCC	1 cut(s)	200
PshBI	ATTAAT	2 cut(s)	468, 494
PspFI	CCCAGC	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	198, 223, 555, 670, 733
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	517, 684
RsaNI	GTAC	2 cut(s)	516, 683
SapI	GCTCTTC	3 cut(s)	303, 327, 810
SaqAI	TTAA	4 cut(s)	468, 473, 494, 677
SatI	GCNGC	7 cut(s)	27, 181, 414, 522, 567, 753, 804
Sau3AI	GATC	4 cut(s)	247, 294, 488, 861
Sau96I	GGNCC	1 cut(s)	772
SfaNI	GCATC	2 cut(s)	331, 461
SfcI	CTRYAG	1 cut(s)	27
SfoI	GGCGCC	1 cut(s)	198
Sse9I	AATT	6 cut(s)	16, 469, 474, 594, 647, 711
SsiI	CCGC	4 cut(s)	173, 180, 519, 752
SspDI	GGCGCC	1 cut(s)	196
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	2 cut(s)	821, 865
StyI	CCWWGG	2 cut(s)	273, 775
TaaI	ACNGT	4 cut(s)	87, 187, 682, 718
TaiI	ACGT	1 cut(s)	367
TasI	AATT	6 cut(s)	16, 469, 474, 594, 647, 711
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	2 cut(s)	183, 755
TfiI	GAWTC	3 cut(s)	32, 240, 766
Tru1I	TTAA	4 cut(s)	468, 473, 494, 677
Tru9I	TTAA	4 cut(s)	468, 473, 494, 677
TscAI	CASTG	1 cut(s)	723
TseI	GCWGC	5 cut(s)	26, 413, 521, 566, 803
TspDTI	ATGAA	4 cut(s)	59, 162, 723, 828
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	723
VspI	ATTAAT	2 cut(s)	468, 494
XapI	RAATTY	2 cut(s)	594, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	2 cut(s)	552, 651
XspI	CTAG	2 cut(s)	821, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.