Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

14139757 .. 14140369

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGACACCGGAGCGGCGGGAGTGAATCTCGCCGCGTCGTCGTCGTCGGCGGAGGACCTGTCGTCTCGGGGGATCGCCGCTCGATGCCGTCCAGGTGTGGAGCTTCGGCGTGTCGCGCCGATACCAGCACCTGCTCGACAAAACGATGCCGCACGTCCTCCACCGCTGGCTCGCAACCCTCGGCGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGTCCAGGGATTCTACATCATGTCGACCCGGAGATCCACGACCTTTCCGACGACCCCAGCCTCTCGACCCGCGGATCCGACGAGTTCCGCCTCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

128

Amino Acids

14.08

Weight (kDa)

10.6

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	79 - 127	4.6e-13	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	139
AccBSI	CCGCTC	2 cut(s)	14, 80
AccI	GTMKAC	3 cut(s)	196, 211, 240
AccII	CGCG	4 cut(s)	35, 116, 208, 288
AclWI	GGATC	4 cut(s)	80, 244, 285, 298
AcsI	RAATTY	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	185
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	91, 220
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	4 cut(s)	80, 244, 285, 298
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	2 cut(s)	66, 326
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	245
AvaI	CYCGRG	2 cut(s)	66, 326
AvaII	GGWCC	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	1 cut(s)	355
BciT130I	CCWGG	2 cut(s)	93, 222
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	4 cut(s)	15, 33, 78, 150
BlsI	GCNGC	4 cut(s)	16, 34, 79, 151
Bme1390I	CCNGG	3 cut(s)	93, 222, 245
Bme18I	GGWCC	1 cut(s)	55
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	66, 326
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	3 cut(s)	93, 222, 245
BmsI	GCATC	2 cut(s)	74, 136
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	4 cut(s)	179, 190, 221, 286
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	93, 222
BseDI	CCNNGG	4 cut(s)	179, 190, 221, 286
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	4 cut(s)	35, 116, 208, 288
BshFI	GGCC	1 cut(s)	189
BsiHKCI	CYCGRG	2 cut(s)	66, 326
BsiSI	CCGG	2 cut(s)	9, 245
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	2 cut(s)	66, 326
Bsp143I	GATC	3 cut(s)	72, 249, 290
BspANI	GGCC	1 cut(s)	189
BspFNI	CGCG	4 cut(s)	35, 116, 208, 288
BspLI	GGNNCC	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	4 cut(s)	80, 244, 285, 298
BsrBI	CCGCTC	2 cut(s)	14, 80
BsrDI	GCAATG	1 cut(s)	366
BssECI	CCNNGG	4 cut(s)	179, 190, 221, 286
BssMI	GATC	3 cut(s)	72, 249, 290
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	93, 222
Bst6I	CTCTTC	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	168, 172
BstDSI	CCRYGG	1 cut(s)	286
BstFNI	CGCG	4 cut(s)	35, 116, 208, 288
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	75, 252, 293
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	72, 249, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	2 cut(s)	93, 222
BstSCI	CCNGG	3 cut(s)	91, 220, 243
BstUI	CGCG	4 cut(s)	35, 116, 208, 288
BstX2I	RGATCY	2 cut(s)	249, 290
BstYI	RGATCY	2 cut(s)	249, 290
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	168, 172
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	55
Cfr42I	CCGCGG	1 cut(s)	289
CseI	GACGC	3 cut(s)	24, 197, 327
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	4 cut(s)	103, 170, 189, 276
CviKI_1	RGCY	4 cut(s)	103, 170, 189, 276
CviQI	GTAC	1 cut(s)	343
DpnI	GATC	3 cut(s)	74, 251, 292
DpnII	GATC	3 cut(s)	72, 249, 290
DraI	TTTAAA	1 cut(s)	334
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	314
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	314
EciI	GGCGGA	2 cut(s)	65, 293
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	55
Eco88I	CYCGRG	2 cut(s)	66, 326
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	91, 220
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	239
FaiI	YATR	1 cut(s)	237
FatI	CATG	1 cut(s)	235
FauI	CCCGC	2 cut(s)	10, 293
FblI	GTMKAC	3 cut(s)	196, 211, 240
Fnu4HI	GCNGC	4 cut(s)	15, 33, 78, 150
Fsp4HI	GCNGC	4 cut(s)	15, 33, 78, 150
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	15, 33, 78, 150
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	9, 245
HgaI	GACGC	3 cut(s)	24, 197, 327
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	25, 226
HpaII	CCGG	2 cut(s)	9, 245
Hpy166II	GTNNAC	3 cut(s)	197, 212, 241
Hpy188I	TCNGA	2 cut(s)	265, 295
Hpy188III	TCNNGA	2 cut(s)	280, 376
Hpy8I	GTNNAC	3 cut(s)	197, 212, 241
Hpy99I	CGWCG	7 cut(s)	40, 43, 46, 49, 269, 299, 321
HpyCH4IV	ACGT	2 cut(s)	154, 199
HpyCH4V	TGCA	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpySE526I	ACGT	2 cut(s)	154, 199
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	116
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	72, 249, 290
LmnI	GCTCC	2 cut(s)	11, 100
LweI	GCATC	2 cut(s)	74, 136
MaeII	ACGT	2 cut(s)	154, 199
MalI	GATC	3 cut(s)	74, 251, 292
MbiI	CCGCTC	2 cut(s)	14, 80
MboI	GATC	3 cut(s)	72, 249, 290
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	2 cut(s)	249, 290
MluCI	AATT	2 cut(s)	335, 348
MmeI	TCCRAC	2 cut(s)	288, 318
MnlI	CCTC	7 cut(s)	46, 168, 189, 213, 287, 317, 332
MseI	TTAA	1 cut(s)	333
MspA1I	CMGCKG	2 cut(s)	166, 288
MspI	CCGG	2 cut(s)	9, 245
MspR9I	CCNGG	3 cut(s)	93, 222, 245
MvaI	CCWGG	2 cut(s)	93, 222
MvnI	CGCG	4 cut(s)	35, 116, 208, 288
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	72, 249, 290
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	205, 261
PfeI	GAWTC	2 cut(s)	25, 226
PkrI	GCNGC	4 cut(s)	16, 34, 79, 151
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	91, 220
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	91, 220
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	249, 290
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SacII	CCGCGG	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	4 cut(s)	15, 33, 78, 150
Sau3AI	GATC	3 cut(s)	72, 249, 290
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	3 cut(s)	93, 222, 245
SetI	ASST	7 cut(s)	60, 97, 105, 133, 157, 202, 261
SfaNI	GCATC	2 cut(s)	74, 136
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	335, 348
StyD4I	CCNGG	3 cut(s)	91, 220, 243
StyI	CCWWGG	1 cut(s)	190
TaiI	ACGT	2 cut(s)	157, 202
TaqI	TCGA	5 cut(s)	82, 136, 240, 281, 316
TasI	AATT	2 cut(s)	335, 348
TauI	GCSGC	4 cut(s)	17, 35, 80, 152
TfiI	GAWTC	2 cut(s)	25, 226
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	335
XmiI	GTMKAC	3 cut(s)	196, 211, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.