Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

22409184 .. 22410075

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0217800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCCAGACTTTGGGAGTCACAGCTGTTGTTCTCACCGTATTTTGCTTGTGCTCTTTGGCAAATGCCGACGGAGGCAGAATTAGTGAAATCCTTGTCCAAGGCAAGGTGTACTGTGATCCCTGCCGTGTCCAATTCCAAACCAGAATCAGCGAACCCATCGAAGGTGCCACAGTAGCCTTGCAATGCAGGAGCCGCATAAATTCAACGGTCTTATACACAGTTGAACGCAAGACTGGTAAGGATGGCCTTTACACTATTCCCGTGGATGAGGACTACGCAGAGGAGATCTGCGAGGTGAAGACAGTGAGCAGCCCTAGGGCGGATTGCAACGACCGTTTCGATAAGTTTGAGAAGGCTAGAGTTTTGATCACATACAACAATGGTGTTGCCTCCACGGCTCGTTATGCCAATCCCCTTGGGTTCATGAAGAAGGAAGCAGTTCTTGAGTGCGAGAAAGTACTCAAGGAACTGTTTCCCGAGGAGCAGACCGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

166

Amino Acids

18.46

Weight (kDa)

4.97

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	33 - 113	1.5e-17	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	13
AciI	CCGC	2 cut(s)	196, 323
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	2 cut(s)	113, 462
AfiI	CCNNNNNNNGG	4 cut(s)	13, 106, 164, 322
AgsI	TTSAA	2 cut(s)	207, 227
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	2 cut(s)	3, 247
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	202
Asp700I	GAANNNNTTC	2 cut(s)	441, 474
AspA2I	CCTAGG	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	28, 310
AvaI	CYCGRG	1 cut(s)	479
AvrII	CCTAGG	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	167, 239
BceAI	ACGGC	2 cut(s)	111, 414
BclI	TGATCA	1 cut(s)	369
BfaI	CTAG	2 cut(s)	318, 360
BglI	GCCNNNNNGGC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	2 cut(s)	196, 313
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	2 cut(s)	197, 314
BmcAI	AGTACT	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	169, 194
BpiI	GAAGAC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	449, 467
BsaJI	CCNNGG	6 cut(s)	100, 264, 317, 396, 418, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 106, 164, 322
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	191
BseDI	CCNNGG	6 cut(s)	100, 264, 317, 396, 418, 480
BseGI	GGATG	2 cut(s)	250, 274
BseLI	CCNNNNNNNGG	4 cut(s)	13, 106, 164, 322
BseMI	GCAATG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	299, 497
BseXI	GCAGC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	5, 249
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	479
BslI	CCNNNNNNNGG	4 cut(s)	13, 106, 164, 322
BsnI	GGCC	2 cut(s)	5, 249
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	118, 288, 369
BspACI	CCGC	2 cut(s)	196, 323
BspANI	GGCC	2 cut(s)	5, 249
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	169, 194
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	6 cut(s)	100, 264, 317, 396, 418, 480
BssMI	GATC	3 cut(s)	118, 288, 369
BssT1I	CCWWGG	3 cut(s)	100, 317, 418
Bst4CI	ACNGT	8 cut(s)	40, 116, 175, 211, 223, 307, 338, 474
BstDSI	CCRYGG	2 cut(s)	264, 396
BstF5I	GGATG	2 cut(s)	250, 274
BstKTI	GATC	3 cut(s)	121, 291, 372
BstMBI	GATC	3 cut(s)	118, 288, 369
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 195, 398, 407
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	5, 249
BtgI	CCRYGG	2 cut(s)	264, 396
BtsCI	GGATG	2 cut(s)	250, 274
BtsIMutI	CAGTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	112, 461
CviAII	CATG	1 cut(s)	427
CviJI	RGCY	8 cut(s)	5, 26, 179, 195, 249, 315, 359, 401
CviKI_1	RGCY	8 cut(s)	5, 26, 179, 195, 249, 315, 359, 401
CviQI	GTAC	2 cut(s)	112, 461
DpnI	GATC	3 cut(s)	120, 290, 371
DpnII	GATC	3 cut(s)	118, 288, 369
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	3 cut(s)	100, 317, 418
Eco88I	CYCGRG	1 cut(s)	479
EcoT14I	CCWWGG	3 cut(s)	100, 317, 418
ErhI	CCWWGG	3 cut(s)	100, 317, 418
FaeI	CATG	1 cut(s)	430
FaiI	YATR	5 cut(s)	200, 217, 376, 408, 428
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	196, 313
FokI	GGATG	2 cut(s)	257, 281
Fsp4HI	GCNGC	2 cut(s)	196, 313
FspBI	CTAG	2 cut(s)	318, 360
GluI	GCNGC	2 cut(s)	196, 313
HaeIII	GGCC	2 cut(s)	5, 249
Hin1II	CATG	1 cut(s)	430
HinfI	GANTC	2 cut(s)	18, 147
HphI	GGTGA	2 cut(s)	28, 310
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	427, 446, 479
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	158, 349, 427
HpyCH4III	ACNGT	8 cut(s)	40, 116, 175, 211, 223, 307, 338, 474
HpyCH4V	TGCA	3 cut(s)	184, 189, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 195, 398, 407
Hsp92II	CATG	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	118, 288, 369
LmnI	GCTCC	2 cut(s)	192, 484
LpnPI	CCDG	5 cut(s)	20, 136, 157, 175, 222
Lsp1109I	GCAGC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	318, 360
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	120, 290, 371
MboI	GATC	3 cut(s)	118, 288, 369
MboII	GAAGA	2 cut(s)	313, 442
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	81, 134, 202
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	68, 265, 277, 289, 403, 475
MroXI	GAANNNNTTC	2 cut(s)	441, 474
MspA1I	CMGCKG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	176, 195, 398, 407
NdeII	GATC	3 cut(s)	118, 288, 369
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	2 cut(s)	169, 194
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdmI	GAANNNNTTC	2 cut(s)	441, 474
PfeI	GAWTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	197, 314
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	169, 194
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	113, 462
RsaNI	GTAC	2 cut(s)	112, 461
SatI	GCNGC	2 cut(s)	196, 313
Sau3AI	GATC	3 cut(s)	118, 288, 369
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	28, 111, 169, 300
SmlI	CTYRAG	2 cut(s)	446, 464
SmoI	CTYRAG	2 cut(s)	446, 464
Sse9I	AATT	3 cut(s)	81, 134, 202
SsiI	CCGC	2 cut(s)	196, 323
SspMI	CTAG	2 cut(s)	318, 360
StyI	CCWWGG	3 cut(s)	100, 317, 418
TaaI	ACNGT	8 cut(s)	40, 116, 175, 211, 223, 307, 338, 474
TaqI	TCGA	2 cut(s)	162, 342
TasI	AATT	3 cut(s)	81, 134, 202
TatI	WGTACW	2 cut(s)	111, 460
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	415, 443
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	441, 474
XspI	CTAG	2 cut(s)	318, 360
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.