Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

23563405 .. 23567139

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0253200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCGGTAAACACCATCAAGGTCAGCAACCTTTCCTTGGGTGCAAGTGAGAGAGACATCAAGGAGTTCTTTTCCTTTTCGGGCGATATCGCATATGTGGAAATGCAGAGTGACACTGAGCGGTCCCAAATTGCATATGTTACCTTCAAGGATCTACAAGGAGCAGAGACTGCTGTGCTTCTTTCGGGAGCTACAATAGTTGATATGTCTGTAACCATAACTCTCGCTCCAGAATACGAGTTGCCACCTGCTGCAATAGCACCTTCTGTAACTGATAAAGCCCCTGGTGGTGCTGAATCTGCATTTCGGAAGGCAGAGGATGTTGTTAGCAGCATGCTTGCAAAGGGCTTTATCTTGGGGAAAGATGCAGTCAACAAGGCAAAGGGCCTTGATGAGAAACACCAGTTGACCTCAACAGCTTCAGAAAAGGTTGCTTCTTTTGACAAAAAGATTGGGCTTACTGAGAAAATAAGTGTTGGTACTTCTGTGGTGAGTGAAAAAGTTCGCGAAGTGGATCAGAAATTCCAGGTCTCTGAGAAAACCAAGTCAGCTTTTGCTGCTGCTGAGCAGACAGTTAGCAATGCTGGATCTGCCATTATGAAGAACCGATATGTGTTTACTTCAGCTGCATGGGTTTCGGGTGCTTTCAACAAGGTTGCAAAGGCAGCTGGTGATGTTGGTCAGAAGACAAAAGAAAAAGTTGGAATGGTGGAAGAGGAAAAGAACAGAAAAATCGAGGATGACTATGCTCAAGTTCTGTCTGAGTCTCCAAAAGCAACTGGACCAAGTGAGCATGAACCTGTGAAAGGTTTGATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

273

Amino Acids

29.13

Weight (kDa)

5.49

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	7 - 66	2e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	4 cut(s)	159, 522, 595, 808
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	405, 606
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	2 cut(s)	37, 806
AgsI	TTSAA	2 cut(s)	148, 649
AjnI	CCWGG	2 cut(s)	283, 525
AluBI	AGCT	5 cut(s)	191, 419, 551, 626, 668
AluI	AGCT	5 cut(s)	191, 419, 551, 626, 668
Alw26I	GTCTC	4 cut(s)	48, 161, 535, 771
AlwI	GGATC	4 cut(s)	159, 522, 595, 808
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	6 cut(s)	251, 330, 557, 560, 626, 665
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	3 cut(s)	123, 385, 782
AsuHPI	GGTGA	2 cut(s)	502, 683
AvaII	GGWCC	2 cut(s)	123, 782
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	6 cut(s)	238, 342, 544, 547, 613, 677
BccI	CCATC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	618, 652
BciT130I	CCWGG	2 cut(s)	285, 527
BcoDI	GTCTC	4 cut(s)	48, 161, 535, 771
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	6 cut(s)	252, 331, 558, 561, 627, 666
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	6 cut(s)	253, 332, 559, 562, 628, 667
Bme1390I	CCNGG	2 cut(s)	285, 527
Bme18I	GGWCC	2 cut(s)	123, 782
BmgT120I	GGNCC	3 cut(s)	123, 385, 782
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	285, 527
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	36, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 806
Bse1I	ACTGG	2 cut(s)	403, 784
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	285, 527
BseDI	CCNNGG	2 cut(s)	36, 283
BseGI	GGATG	2 cut(s)	325, 745
BseLI	CCNNNNNNNGG	2 cut(s)	37, 806
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	5 cut(s)	108, 453, 525, 555, 753
BseNI	ACTGG	2 cut(s)	403, 784
BseXI	GCAGC	6 cut(s)	238, 342, 544, 547, 613, 677
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	37, 806
BsmAI	GTCTC	4 cut(s)	48, 161, 535, 771
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	387
Bso31I	GGTCTC	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	151, 514, 587, 813
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp68I	TCGCGA	1 cut(s)	507
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	5 cut(s)	109, 454, 526, 556, 754
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	4 cut(s)	159, 522, 595, 808
BspTNI	GGTCTC	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	403, 784
BssECI	CCNNGG	2 cut(s)	36, 283
BssMI	GATC	4 cut(s)	151, 514, 587, 813
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	285, 527
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	708
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	335, 339
BstDEI	CTNAG	5 cut(s)	117, 462, 534, 564, 762
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	325, 745
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	4 cut(s)	154, 517, 590, 816
BstMAI	GTCTC	4 cut(s)	48, 161, 535, 771
BstMBI	GATC	4 cut(s)	151, 514, 587, 813
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 257, 299, 557, 590, 665
BstNI	CCWGG	2 cut(s)	285, 527
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	283, 525
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	6 cut(s)	238, 342, 544, 547, 613, 677
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	2 cut(s)	151, 587
BstYI	RGATCY	2 cut(s)	151, 587
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	325, 745
BtsIMutI	CAGTG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	335, 339
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	123, 385, 782
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	3 cut(s)	334, 630, 794
CviJI	RGCY	9 cut(s)	191, 281, 348, 387, 419, 457, 551, 626, 668
CviKI_1	RGCY	9 cut(s)	191, 281, 348, 387, 419, 457, 551, 626, 668
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	5 cut(s)	117, 462, 534, 564, 762
DpnI	GATC	4 cut(s)	153, 516, 589, 815
DpnII	GATC	4 cut(s)	151, 514, 587, 813
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	123, 782
Eco57I	CTGAAG	2 cut(s)	405, 606
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	283, 525
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	337, 633, 797
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	333, 629, 793
FauNDI	CATATG	2 cut(s)	94, 136
Fnu4HI	GCNGC	6 cut(s)	252, 331, 558, 561, 627, 666
FokI	GGATG	2 cut(s)	332, 752
Fsp4HI	GCNGC	6 cut(s)	252, 331, 558, 561, 627, 666
GluI	GCNGC	6 cut(s)	252, 331, 558, 561, 627, 666
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	337, 633, 797
HincII	GTYRAC	2 cut(s)	373, 408
HindII	GTYRAC	2 cut(s)	373, 408
HinfI	GANTC	2 cut(s)	296, 764
HphI	GGTGA	2 cut(s)	502, 683
Hpy166II	GTNNAC	4 cut(s)	10, 373, 408, 618
Hpy188I	TCNGA	6 cut(s)	309, 424, 519, 535, 684, 763
Hpy188III	TCNNGA	3 cut(s)	186, 230, 506
Hpy8I	GTNNAC	4 cut(s)	10, 373, 408, 618
HpyAV	CCTTC	3 cut(s)	154, 273, 304
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4V	TGCA	9 cut(s)	44, 106, 134, 254, 302, 341, 368, 629, 659
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 257, 299, 557, 590, 665
HpyF3I	CTNAG	5 cut(s)	117, 462, 534, 564, 762
Hsp92II	CATG	3 cut(s)	337, 633, 797
Kzo9I	GATC	4 cut(s)	151, 514, 587, 813
LmnI	GCTCC	3 cut(s)	161, 188, 232
Lsp1109I	GCAGC	6 cut(s)	238, 342, 544, 547, 613, 677
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	4 cut(s)	110, 139, 211, 268
MalI	GATC	4 cut(s)	153, 516, 589, 815
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	4 cut(s)	151, 514, 587, 813
MboII	GAAGA	3 cut(s)	613, 697, 725
MflI	RGATCY	2 cut(s)	151, 587
MluCI	AATT	2 cut(s)	129, 521
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	4 cut(s)	310, 421, 709, 730
MroXI	GAANNNNTTC	1 cut(s)	501
MspA1I	CMGCKG	2 cut(s)	626, 668
MspR9I	CCNGG	2 cut(s)	285, 527
MvaI	CCWGG	2 cut(s)	285, 527
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	6 cut(s)	170, 257, 299, 557, 590, 665
NdeI	CATATG	2 cut(s)	94, 136
NdeII	GATC	4 cut(s)	151, 514, 587, 813
NlaIII	CATG	3 cut(s)	337, 633, 797
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	110
NruI	TCGCGA	1 cut(s)	507
NspI	RCATGY	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	6 cut(s)	253, 332, 559, 562, 628, 667
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	283, 525
PspGI	CCWGG	2 cut(s)	283, 525
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	123, 385, 782
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	151, 587
PvuII	CAGCTG	2 cut(s)	626, 668
RruI	TCGCGA	1 cut(s)	507
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SatI	GCNGC	6 cut(s)	252, 331, 558, 561, 627, 666
Sau3AI	GATC	4 cut(s)	151, 514, 587, 813
Sau96I	GGNCC	3 cut(s)	123, 385, 782
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	285, 527
SfaNI	GCATC	1 cut(s)	355
SinI	GGWCC	2 cut(s)	123, 782
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	2 cut(s)	129, 521
SsiI	CCGC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	283, 525
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	735
TasI	AATT	2 cut(s)	129, 521
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	6 cut(s)	251, 330, 557, 560, 626, 665
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	614, 810
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	123, 782
XagI	CCTNNNNNAGG	1 cut(s)	804
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.