Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

62473202 .. 62474036

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0451900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGCCCAAGGCAGAGAAGAAGCCCGCCGAGAAGAAGCCGGCAGAGGAGAAGAAGTCCACCGTCGCCGAGAAGGCCCCGGCAGAGAAGAAGCCCAAGGCCGGCAAGAAGCTCCCCAAGGAGGCCGGAGCCGCCGCCGGAGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTAGAGACCTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTCCACCCTGACATCGGGATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCGTCGAGGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTCGGGAAATCCAGACTGCTGTCAGGCTTGTGCTTCCCGGTGAATTGGCCAAGCATGCTGTTTCTGAGGGTACAAAGGCTGTGACCAAGTTCACTAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

148

Amino Acids

16.25

Weight (kDa)

10.08

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	48 - 124	2.4e-20	Core histone H2A/H2B/H3/H4 domain
Histone_ABTB	PF26281	78 - 147	4.6e-08	Histone domain in ABTB family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	27, 132, 135
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	320, 415
AfiI	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	4 cut(s)	112, 264, 289, 441
AluI	AGCT	4 cut(s)	112, 264, 289, 441
Alw26I	GTCTC	2 cut(s)	135, 170
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	5 cut(s)	75, 99, 123, 243, 390
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	76, 202, 214
AsuC2I	CCSGG	2 cut(s)	80, 381
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	2 cut(s)	202, 214
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	4
BcnI	CCSGG	2 cut(s)	80, 381
BcoDI	GTCTC	2 cut(s)	135, 170
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
Bme1390I	CCNGG	2 cut(s)	80, 381
Bme18I	GGWCC	2 cut(s)	202, 214
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	3 cut(s)	76, 202, 214
BmiI	GGNNCC	3 cut(s)	6, 78, 130
BmrFI	CCNGG	2 cut(s)	80, 381
BoxI	GACNNNNGTC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	80, 381
BsaBI	GATNNNNATC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	5 cut(s)	9, 78, 96, 117, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
Bse118I	RCCGGY	2 cut(s)	40, 101
Bse8I	GATNNNNATC	1 cut(s)	191
BseDI	CCNNGG	5 cut(s)	9, 78, 96, 117, 246
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
BseMII	CTCAG	2 cut(s)	308, 399
BseRI	GAGGAG	1 cut(s)	62
BshFI	GGCC	5 cut(s)	77, 101, 125, 245, 392
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	6 cut(s)	41, 80, 102, 126, 138, 381
BslI	CCNNNNNNNGG	4 cut(s)	101, 121, 211, 227
BsmAI	GTCTC	2 cut(s)	135, 170
BsnI	GGCC	5 cut(s)	77, 101, 125, 245, 392
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	186, 231
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	3 cut(s)	27, 132, 135
BspANI	GGCC	5 cut(s)	77, 101, 125, 245, 392
BspCNI	CTCAG	2 cut(s)	307, 400
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	6, 78, 130
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	40, 101
BssAI	RCCGGY	2 cut(s)	40, 101
BssECI	CCNNGG	5 cut(s)	9, 78, 96, 117, 246
BssMI	GATC	2 cut(s)	186, 231
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	4 cut(s)	9, 96, 117, 246
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	149, 161
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	6 cut(s)	27, 42, 103, 291, 312, 399
BstDEI	CTNAG	2 cut(s)	294, 408
BstDSI	CCRYGG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	189, 234
BstMAI	GTCTC	2 cut(s)	135, 170
BstMBI	GATC	2 cut(s)	186, 231
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 74, 131, 398
BstNSI	RCATGY	1 cut(s)	401
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	78, 379
BstX2I	RGATCY	2 cut(s)	186, 231
BstYI	RGATCY	2 cut(s)	186, 231
BsuRI	GGCC	5 cut(s)	77, 101, 125, 245, 392
BtgI	CCRYGG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	6 cut(s)	27, 42, 103, 291, 312, 399
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	40, 101
Cfr13I	GGNCC	3 cut(s)	76, 202, 214
Csp6I	GTAC	2 cut(s)	319, 414
CviAII	CATG	3 cut(s)	247, 256, 398
CviQI	GTAC	2 cut(s)	319, 414
DdeI	CTNAG	2 cut(s)	294, 408
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	188, 233
DpnII	GATC	2 cut(s)	186, 231
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	149, 161
EarI	CTCTTC	2 cut(s)	149, 161
Eco130I	CCWWGG	4 cut(s)	9, 96, 117, 246
Eco31I	GGTCTC	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	202, 214
Eco88I	CYCGRG	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoO109I	RGGNCCY	2 cut(s)	76, 202
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	4 cut(s)	9, 96, 117, 246
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	9, 96, 117, 246
FaeI	CATG	3 cut(s)	250, 259, 401
FaiI	YATR	3 cut(s)	248, 257, 399
FatI	CATG	3 cut(s)	246, 255, 397
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	132, 135
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	132, 135
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	77, 101, 125, 245, 392
HapII	CCGG	6 cut(s)	41, 80, 102, 126, 138, 381
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	250, 259, 401
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	252, 299
HpaII	CCGG	6 cut(s)	41, 80, 102, 126, 138, 381
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	60, 217, 435
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	7 cut(s)	229, 256, 283, 296, 347, 355, 444
Hpy8I	GTNNAC	3 cut(s)	60, 217, 435
Hpy99I	CGWCG	3 cut(s)	68, 307, 337
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 74, 131, 398
HpyF3I	CTNAG	2 cut(s)	294, 408
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	250, 259, 401
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	2 cut(s)	40, 101
KroNI	GCCGGC	2 cut(s)	42, 103
Kzo9I	GATC	2 cut(s)	186, 231
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	117, 128
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	188, 233
MboI	GATC	2 cut(s)	186, 231
MflI	RGATCY	2 cut(s)	186, 231
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	386
MluNI	TGGCCA	1 cut(s)	392
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	40, 115, 150, 215, 300, 309, 403
Mox20I	TGGCCA	1 cut(s)	392
MroNI	GCCGGC	2 cut(s)	40, 101
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	6 cut(s)	41, 80, 102, 126, 138, 381
MspR9I	CCNGG	2 cut(s)	80, 381
MwoI	GCNNNNNNNGC	4 cut(s)	11, 74, 131, 398
NaeI	GCCGGC	2 cut(s)	42, 103
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	80, 381
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	2 cut(s)	186, 231
NgoMIV	GCCGGC	2 cut(s)	40, 101
NlaIII	CATG	3 cut(s)	250, 259, 401
NlaIV	GGNNCC	3 cut(s)	6, 78, 130
NmeAIII	GCCGAG	2 cut(s)	55, 94
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	401
PaeI	GCATGC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 311
PdiI	GCCGGC	2 cut(s)	42, 103
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	133, 136
PleI	GAGTC	1 cut(s)	307
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	202
PspN4I	GGNNCC	3 cut(s)	6, 78, 130
PspPI	GGNCC	3 cut(s)	76, 202, 214
PspPPI	RGGWCCY	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	186, 231
RsaI	GTAC	2 cut(s)	320, 415
RsaNI	GTAC	2 cut(s)	319, 414
SapI	GCTCTTC	1 cut(s)	161
SatI	GCNGC	2 cut(s)	132, 135
Sau3AI	GATC	2 cut(s)	186, 231
Sau96I	GGNCC	3 cut(s)	76, 202, 214
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	80, 381
SetI	ASST	8 cut(s)	114, 182, 204, 216, 266, 291, 320, 443
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	202, 214
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	27, 132, 135
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	78, 379
StyI	CCWWGG	4 cut(s)	9, 96, 117, 246
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	282, 305
TasI	AATT	1 cut(s)	386
TauI	GCSGC	2 cut(s)	134, 137
TfiI	GAWTC	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	256, 272
VpaK11BI	GGWCC	2 cut(s)	202, 214
XagI	CCTNNNNNAGG	1 cut(s)	209
XceI	RCATGY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.