Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

54750953 .. 54752197

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTCCAGATGTCGATGGCCTCCTTGATAAGAAGTTCGAGGCTGTAGCCTGCGCTGCTCATCCCCCAGAGCTAGGATTTCAACCCACACAGCACTCTGATCAGGATTCTAATGCGCTTGTAACCAACTTGCATGAAGGGCCCAGCTCCTCTGAGACATCCAAAATTATGAATTTTGAATCAAGAAAATCAACCATTGAAGATGTGATGGAAGCTCTGAAAGGGAATCAAGCCAATCCCATTGTCATATGCGGCATGGGCGGAGTTGGCAAGACAACAATGGTGGGTGAAGTTGTTACCAGAGCAAGGACTGAGGGTCTATTCCATGAGTATACAAAGGCAGTTGTTAATGAAATACCTGATAGAAGTAAGATTCAATCTGATATTGCAGAATTTCTGGGCCTAGAACTTAAAGAACAGGGTTTAGAAAGCAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

146

Amino Acids

15.8

Weight (kDa)

4.86

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	63 - 139	9.1e-09	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	2 cut(s)	252, 261
AcsI	RAATTY	2 cut(s)	172, 392
AfiI	CCNNNNNNNGG	2 cut(s)	74, 306
AgsI	TTSAA	4 cut(s)	83, 179, 200, 377
AhdI	GACNNNNNGTC	1 cut(s)	315
AluBI	AGCT	4 cut(s)	73, 147, 215, 438
AluI	AGCT	4 cut(s)	73, 147, 215, 438
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	3 cut(s)	19, 140, 400
ApaI	GGGCCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	172, 392
AspLEI	GCGC	2 cut(s)	56, 118
AspS9I	GGNCC	3 cut(s)	140, 141, 400
AsuHPI	GGTGA	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	11, 202
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	74, 404
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	57, 253
BlsI	GCNGC	2 cut(s)	58, 254
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	140, 141, 400
BmiI	GGNNCC	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 306
BseGI	GGATG	2 cut(s)	61, 158
BseLI	CCNNNNNNNGG	2 cut(s)	74, 306
BseMII	CTCAG	2 cut(s)	144, 303
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	3 cut(s)	21, 142, 402
BslI	CCNNNNNNNGG	2 cut(s)	74, 306
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	21, 142, 402
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	252, 261
BspANI	GGCC	3 cut(s)	21, 142, 402
BspCNI	CTCAG	2 cut(s)	145, 304
BspLI	GGNNCC	1 cut(s)	142
BssMI	GATC	1 cut(s)	100
BssNAI	GTATAC	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	153, 312
BstF5I	GGATG	2 cut(s)	61, 158
BstHHI	GCGC	2 cut(s)	56, 118
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 139, 258, 267
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	43
BstZ17I	GTATAC	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	21, 142, 402
BtsCI	GGATG	2 cut(s)	61, 158
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	56, 118
Cfr13I	GGNCC	3 cut(s)	140, 141, 400
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	3 cut(s)	134, 256, 326
DdeI	CTNAG	2 cut(s)	153, 312
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	3 cut(s)	137, 259, 329
FaiI	YATR	7 cut(s)	135, 170, 248, 250, 257, 327, 333
FatI	CATG	3 cut(s)	133, 255, 325
FauNDI	CATATG	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	2 cut(s)	57, 253
FokI	GGATG	2 cut(s)	48, 145
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	57, 253
FspBI	CTAG	2 cut(s)	74, 404
GlaI	GCGC	2 cut(s)	55, 117
GluI	GCNGC	2 cut(s)	57, 253
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	21, 142, 402
HhaI	GCGC	2 cut(s)	56, 118
Hin1II	CATG	3 cut(s)	137, 259, 329
Hin6I	GCGC	2 cut(s)	54, 116
HinP1I	GCGC	2 cut(s)	54, 116
HinfI	GANTC	5 cut(s)	4, 107, 179, 226, 373
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	100, 154, 219, 382
Hpy188III	TCNNGA	3 cut(s)	8, 104, 183
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	133, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 139, 258, 267
HpyF3I	CTNAG	2 cut(s)	153, 312
Hsp92II	CATG	3 cut(s)	137, 259, 329
HspAI	GCGC	2 cut(s)	54, 116
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	9 cut(s)	21, 64, 81, 89, 157, 313, 372, 383, 404
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	74, 404
MaeIII	GTNAC	2 cut(s)	121, 295
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	165, 172, 392
MnlI	CCTC	4 cut(s)	32, 34, 160, 307
MseI	TTAA	2 cut(s)	348, 411
MwoI	GCNNNNNNNGC	4 cut(s)	56, 139, 258, 267
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	137, 259, 329
NlaIV	GGNNCC	1 cut(s)	142
PfeI	GAWTC	4 cut(s)	107, 179, 226, 373
PkrI	GCNGC	2 cut(s)	58, 254
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	142
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	140, 141, 400
SaqAI	TTAA	2 cut(s)	348, 411
SatI	GCNGC	2 cut(s)	57, 253
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	3 cut(s)	140, 141, 400
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	75, 149, 217, 361, 440
SfcI	CTRYAG	1 cut(s)	45
Sse9I	AATT	3 cut(s)	165, 172, 392
SsiI	CCGC	2 cut(s)	252, 261
SspMI	CTAG	2 cut(s)	74, 404
TaqI	TCGA	2 cut(s)	15, 39
TasI	AATT	3 cut(s)	165, 172, 392
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	4 cut(s)	107, 179, 226, 373
Tru1I	TTAA	2 cut(s)	348, 411
Tru9I	TTAA	2 cut(s)	348, 411
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	150, 185, 366
XapI	RAATTY	2 cut(s)	172, 392
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	2 cut(s)	74, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.