Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

52528901 .. 52529950

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0386200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTCAAATTGCAAAGATTGAGTCGCACGCAGAGCTGAAATCATCTGCAGAGAAGTTCTATGGCTTTTTCAAGAACAACATGAGCTCTTTTGTTCAGATGTTCCCTCAAATCTTTAAGAACTTCGAAGTTGTGGGGGGAGGTGAGATCAGAGCAGGCTCCGTGACTAAATGGACATACGACATTGGAGAGGGTGTAATGGCAACAAAAATCAAAATCCAAGCCTTAGATGATGGAAATACCTCAATTACGTTTCTTGTCCTTGAAGGACATCTTTTGAAGGTCTATAACAGTTTCAAGGCAAAGCTACAACTTACCAAAGCTGGTCATGGTGGGAGCATAGTGAAATGGACCCTTGAATTTGAGAAGGCAAATGCAAATTCACCTGATCTAAAAATCTATGCAGAACAAGCCATTAAAGTGTCCAAGGGCATTGATGCTTACCTTGGAAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

9.2

Isoelectric Point (pI)

19.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	5 - 149	5.4e-30	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	359, 379
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	73, 266, 280, 298, 359
AluBI	AGCT	4 cut(s)	37, 87, 307, 323
AluI	AGCT	4 cut(s)	37, 87, 307, 323
Alw21I	GWGCWC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	359, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	155, 375
AsuII	TTCGAA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	89
BccI	CCATC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	160, 353
BmsI	GCATC	1 cut(s)	427
Bpu14I	TTCGAA	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	426, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	426, 445
BseLI	CCNNNNNNNGG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	451
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	147, 388
BspLI	GGNNCC	2 cut(s)	160, 353
BspMAI	CTGCAG	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	426, 445
BssMI	GATC	2 cut(s)	147, 388
BssT1I	CCWWGG	2 cut(s)	426, 445
Bst4CI	ACNGT	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	30, 157
BstDEI	CTNAG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	150, 391
BstMBI	GATC	2 cut(s)	147, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 34, 410
BstSFI	CTRYAG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	30, 157
Cfr13I	GGNCC	1 cut(s)	351
CviAII	CATG	2 cut(s)	82, 329
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	2 cut(s)	149, 390
DpnII	GATC	2 cut(s)	147, 388
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	426, 445
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	426, 445
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	2 cut(s)	426, 445
FaeI	CATG	2 cut(s)	85, 332
FaiI	YATR	7 cut(s)	63, 83, 178, 288, 330, 341, 402
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	2 cut(s)	81, 328
FriOI	GRGCYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	85, 332
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	2 cut(s)	155, 375
Hpy188I	TCNGA	2 cut(s)	99, 152
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	260, 274, 361, 444
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	14, 50, 377, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 34, 410
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	85, 332
Kzo9I	GATC	2 cut(s)	147, 388
LmnI	GCTCC	2 cut(s)	164, 336
LpnPI	CCDG	3 cut(s)	141, 309, 399
LweI	GCATC	1 cut(s)	427
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	149, 390
MboI	GATC	2 cut(s)	147, 388
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	9, 246, 359, 379
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	117, 134, 184, 253
MseI	TTAA	2 cut(s)	117, 417
MslI	CAYNNNNRTG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	11, 34, 410
NdeII	GATC	2 cut(s)	147, 388
NlaIII	CATG	2 cut(s)	85, 332
NlaIV	GGNNCC	2 cut(s)	160, 353
NmuCI	GTSAC	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	126
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	160, 353
PspPI	GGNCC	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	117, 417
Sau3AI	GATC	2 cut(s)	147, 388
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	126
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	9, 246, 359, 379
SstI	GAGCTC	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	426, 445
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	126
TasI	AATT	4 cut(s)	9, 246, 359, 379
Tru1I	TTAA	2 cut(s)	117, 417
Tru9I	TTAA	2 cut(s)	117, 417
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	2 cut(s)	359, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.