Rorug02G0154500

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
13714911 .. 13718085
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0154500.1

Sequence Viewer

Length: 1032 bp
ATGGAGTTTCCAGCTGCAGATGCTGATGACAATCCTCAAGACAACGGGTCTCAGATGATGGGTGAGATTAGGTGTCCGATAACAGGAATTGTTATCAACACATACTTGGCACCACCTGGTGATAACCAGCAGCTGCCCTCGTTTTTCTTGTCGCATTTTACGGAGCACAAAGTACTTGGTTCGGGAGGATATGCAACCGTAGTAAAATGCACAAACAAGTTTGATGAGCAGGAATATGCCATCAAGAAAATTCCCATTGGAGAAGTGATTGAAGATAATCCCGAGTCACAACCTTTCAGCTATGCATCTCTTGTAAGGGAGGCGAGAGTCTGGTCCCGGCTTAATCACCAGAATATCGTCCGATACTATGAGTCTTGGACTGAAAACAAGTACTGCGGTTTGCTTGATGAAGATTGGGATGGGGACCCAATAGAAACAGAAAATCCATGCTTGTACATTCAATTGGAACTATGTGCCAGTTCCTTGGAACGCAAGCTGCAGCCAAATGAACAATGCATGAACAATTGGACCACCAGAGAAGAGTGTGCACAGATTTTTGAAGAACTTGTGGAAGGTCTGAACCACATTCATGGCAAAGGGATAATGCACGGAGATATCACCAAGGCGAACATTCTCTTCTGCAATGGTGAAGCCAAAATCTCTGATTTTGGACTAGCCCGAACAATTGGGGCAAAGAATGATGAGGTTGACATGAAGGCGTTCCGACCTTATAGAGCACCTGAGAGGAAGACTGCTGATGCAGATGTCAAGGCTGATATATACAGCTTGGGAATCCTTTTATTCGAGATGCTACAGCCCTTTACAACAGATAGCCACAGAGGTGTTGTTCTTACTGCCTTGAGGGGCACGAAAATCTTTCCGAAAGGCTGGACTGATAACCCAGTAAGGACATGGGTGCTGGGAATGATAAATAATGCCCCATCACAAAGACCCTCAGCATCAGATCTTCTGCACCACCGCAAAACGATTAAGGCCGATATTCTAAGGTCTGAAGCAATGCCCAGTGAATGA

Protein Analysis

343

Amino Acids

38.71

Weight (kDa)

5.11

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 53 - 326 4e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 55 - 324 2.4e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 2 cut(s) 396, 979
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 1032
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 3 cut(s) 174, 392, 455
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 272, 461, 560
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 115
AleI CACNNNNGTG 1 cut(s) 840
AluBI AGCT 5 cut(s) 14, 133, 300, 496, 786
AluI AGCT 5 cut(s) 14, 133, 300, 496, 786
Alw21I GWGCWC 3 cut(s) 168, 550, 739
Alw26I GTCTC 1 cut(s) 54
Alw44I GTGCAC 1 cut(s) 546
AlwNI CAGNNNCTG 2 cut(s) 23, 133
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 1 cut(s) 993
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 5 cut(s) 14, 130, 133, 496, 499
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 719
AspS9I GGNCC 3 cut(s) 333, 424, 528
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 5 cut(s) 74, 131, 338, 610, 659
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 3 cut(s) 333, 424, 528
BaeGI GKGCMC 2 cut(s) 550, 869
BanI GGYRCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 3 cut(s) 168, 550, 739
BbvCI CCTCAGC 1 cut(s) 955
BbvI GCAGC 4 cut(s) 120, 142, 483, 511
BccI CCATC 4 cut(s) 52, 248, 413, 949
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 3 cut(s) 15, 497, 812
BglII AGATCT 1 cut(s) 964
BisI GCNGC 5 cut(s) 15, 131, 134, 497, 500
BlsI GCNGC 5 cut(s) 16, 132, 135, 498, 501
BmcAI AGTACT 2 cut(s) 174, 392
Bme1390I CCNGG 2 cut(s) 117, 337
Bme18I GGWCC 3 cut(s) 333, 424, 528
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 3 cut(s) 333, 424, 528
BmiI GGNNCC 4 cut(s) 111, 335, 425, 426
BmrFI CCNGG 2 cut(s) 117, 337
BmrI ACTGGG 2 cut(s) 896, 1017
BmsI GCATC 5 cut(s) 10, 314, 748, 798, 968
BmuI ACTGGG 2 cut(s) 896, 1017
BpiI GAAGAC 1 cut(s) 755
Bpu10I CCTNAGC 1 cut(s) 955
BpuEI CTTGAG 2 cut(s) 21, 880
BpuMI CCSGG 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 483, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 477, 902, 1023
Bse3DI GCAATG 2 cut(s) 649, 1023
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 483, 621
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 649, 1023
BseMII CTCAG 3 cut(s) 65, 732, 969
BseNI ACTGG 3 cut(s) 477, 902, 1023
BseSI GKGCMC 2 cut(s) 550, 869
BseXI GCAGC 4 cut(s) 120, 142, 483, 511
BseYI CCCAGC 1 cut(s) 919
BsgI GTGCAG 1 cut(s) 956
BshFI GGCC 1 cut(s) 995
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 3 cut(s) 168, 550, 739
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 2 cut(s) 319, 437
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 2 cut(s) 319, 437
BsnI GGCC 1 cut(s) 995
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 4 cut(s) 168, 550, 739, 869
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 1 cut(s) 964
BspACI CCGC 2 cut(s) 396, 979
BspANI GGCC 1 cut(s) 995
BspCNI CTCAG 3 cut(s) 64, 733, 968
BspLI GGNNCC 4 cut(s) 111, 335, 425, 426
BspMAI CTGCAG 2 cut(s) 19, 501
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 649, 1023
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 3 cut(s) 477, 902, 1023
BssECI CCNNGG 2 cut(s) 483, 621
BssMI GATC 1 cut(s) 964
BssT1I CCWWGG 2 cut(s) 483, 621
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 534, 641
BstAUI TGTACA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 4 cut(s) 51, 741, 955, 1004
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 1 cut(s) 967
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 964
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 115, 335
BstSFI CTRYAG 3 cut(s) 15, 497, 812
BstSLI GKGCMC 2 cut(s) 550, 869
BstV1I GCAGC 4 cut(s) 120, 142, 483, 511
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 2 cut(s) 484, 590
BstYI RGATCY 1 cut(s) 964
BsuRI GGCC 1 cut(s) 995
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 1030
Cac8I GCNNGC 1 cut(s) 494
CaiI CAGNNNCTG 2 cut(s) 23, 133
Cfr13I GGNCC 3 cut(s) 333, 424, 528
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 3 cut(s) 173, 391, 454
CviAII CATG 5 cut(s) 447, 517, 590, 712, 912
CviQI GTAC 3 cut(s) 173, 391, 454
DdeI CTNAG 4 cut(s) 51, 741, 955, 1004
DpnI GATC 1 cut(s) 966
DpnII GATC 1 cut(s) 964
DraIII CACNNNGTG 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 534, 641
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 2 cut(s) 534, 641
Eco130I CCWWGG 2 cut(s) 483, 621
Eco31I GGTCTC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 3 cut(s) 333, 424, 528
Eco57I CTGAAG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 483, 621
EcoT22I ATGCAT 2 cut(s) 307, 518
ErhI CCWWGG 2 cut(s) 483, 621
FaeI CATG 5 cut(s) 450, 520, 593, 715, 915
FaqI GGGAC 2 cut(s) 319, 437
FatI CATG 5 cut(s) 446, 516, 589, 711, 911
Fnu4HI GCNGC 5 cut(s) 15, 131, 134, 497, 500
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 5 cut(s) 15, 131, 134, 497, 500
FspBI CTAG 1 cut(s) 674
GluI GCNGC 5 cut(s) 15, 131, 134, 497, 500
GsaI CCCAGC 1 cut(s) 923
HaeIII GGCC 1 cut(s) 995
HapII CCGG 1 cut(s) 337
Hin1II CATG 5 cut(s) 450, 520, 593, 715, 915
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 4 cut(s) 284, 327, 371, 792
HpaII CCGG 1 cut(s) 337
HphI GGTGA 5 cut(s) 74, 131, 338, 610, 659
Hpy166II GTNNAC 2 cut(s) 548, 709
Hpy188I TCNGA 9 cut(s) 54, 78, 362, 579, 664, 725, 882, 964, 1012
Hpy188III TCNNGA 5 cut(s) 38, 183, 244, 281, 805
Hpy8I GTNNAC 2 cut(s) 548, 709
HpyAV CCTTC 2 cut(s) 566, 709
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 4 cut(s) 51, 741, 955, 1004
Hsp92II CATG 5 cut(s) 450, 520, 593, 715, 915
KflI GGGWCCC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 964
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 4 cut(s) 120, 142, 483, 511
LweI GCATC 5 cut(s) 10, 314, 748, 798, 968
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 1 cut(s) 285
MalI GATC 1 cut(s) 966
MboI GATC 1 cut(s) 964
MboII GAAGA 7 cut(s) 284, 422, 551, 572, 628, 760, 959
MfeI CAATTG 3 cut(s) 461, 523, 684
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 4 cut(s) 168, 550, 739, 869
MluCI AATT 5 cut(s) 87, 249, 461, 523, 684
MlyI GAGTC 3 cut(s) 293, 336, 380
MmeI TCCRAC 1 cut(s) 748
MnlI CCTC 9 cut(s) 45, 148, 179, 313, 697, 738, 833, 855, 964
Mph1103I ATGCAT 2 cut(s) 307, 518
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 2 cut(s) 342, 990
MslI CAYNNNNRTG 2 cut(s) 588, 840
MspA1I CMGCKG 2 cut(s) 14, 133
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 117, 337
MunI CAATTG 3 cut(s) 461, 523, 684
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 337
NdeII GATC 1 cut(s) 964
NlaIII CATG 5 cut(s) 450, 520, 593, 715, 915
NlaIV GGNNCC 4 cut(s) 111, 335, 425, 426
NmuCI GTSAC 1 cut(s) 285
NsiI ATGCAT 2 cut(s) 307, 518
OliI CACNNNNGTG 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 1 cut(s) 792
PkrI GCNGC 5 cut(s) 16, 132, 135, 498, 501
PleI GAGTC 3 cut(s) 292, 335, 379
PpsI GAGTC 3 cut(s) 292, 335, 379
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 919
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 4 cut(s) 111, 335, 425, 426
PspPI GGNCC 3 cut(s) 333, 424, 528
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 2 cut(s) 19, 501
PstNI CAGNNNCTG 2 cut(s) 23, 133
PsuI RGATCY 1 cut(s) 964
PvuII CAGCTG 2 cut(s) 14, 133
RsaI GTAC 3 cut(s) 174, 392, 455
RsaNI GTAC 3 cut(s) 173, 391, 454
RseI CAYNNNNRTG 2 cut(s) 588, 840
SaqAI TTAA 2 cut(s) 342, 990
SatI GCNGC 5 cut(s) 15, 131, 134, 497, 500
Sau3AI GATC 1 cut(s) 964
Sau96I GGNCC 3 cut(s) 333, 424, 528
ScaI AGTACT 2 cut(s) 174, 392
SchI GAGTC 3 cut(s) 293, 336, 380
ScrFI CCNGG 2 cut(s) 117, 337
SduI GDGCHC 4 cut(s) 168, 550, 739, 869
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 5 cut(s) 10, 314, 748, 798, 968
SfcI CTRYAG 3 cut(s) 15, 497, 812
SinI GGWCC 3 cut(s) 333, 424, 528
SmiMI CAYNNNNRTG 2 cut(s) 588, 840
SmlI CTYRAG 2 cut(s) 36, 859
SmoI CTYRAG 2 cut(s) 36, 859
Sse9I AATT 5 cut(s) 87, 249, 461, 523, 684
SsiI CCGC 2 cut(s) 396, 979
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 2 cut(s) 115, 335
StyI CCWWGG 2 cut(s) 483, 621
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 804
TasI AATT 5 cut(s) 87, 249, 461, 523, 684
TatI WGTACW 3 cut(s) 172, 390, 453
TfiI GAWTC 1 cut(s) 792
Tru1I TTAA 2 cut(s) 342, 990
Tru9I TTAA 2 cut(s) 342, 990
TscAI CASTG 1 cut(s) 1030
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 5 cut(s) 14, 130, 133, 496, 499
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 5 cut(s) 423, 522, 533, 578, 728
TspGWI ACGGA 2 cut(s) 176, 624
TspRI CASTG 1 cut(s) 1030
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 3 cut(s) 333, 424, 528
XapI RAATTY 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 2 cut(s) 174, 392
Zsp2I ATGCAT 2 cut(s) 307, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.