Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AciI | CCGC | 2 cut(s) | 396, 979 |
| AcsI | RAATTY | 1 cut(s) | 249 |
| AcuI | CTGAAG | 1 cut(s) | 1032 |
| AdeI | CACNNNGTG | 1 cut(s) | 119 |
| AfaI | GTAC | 3 cut(s) | 174, 392, 455 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 83 |
| AgsI | TTSAA | 3 cut(s) | 272, 461, 560 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 1 cut(s) | 115 |
| AleI | CACNNNNGTG | 1 cut(s) | 840 |
| AluBI | AGCT | 5 cut(s) | 14, 133, 300, 496, 786 |
| AluI | AGCT | 5 cut(s) | 14, 133, 300, 496, 786 |
| Alw21I | GWGCWC | 3 cut(s) | 168, 550, 739 |
| Alw26I | GTCTC | 1 cut(s) | 54 |
| Alw44I | GTGCAC | 1 cut(s) | 546 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 23, 133 |
| Ama87I | CYCGRG | 1 cut(s) | 281 |
| AoxI | GGCC | 1 cut(s) | 993 |
| ApaLI | GTGCAC | 1 cut(s) | 546 |
| ApeKI | GCWGC | 5 cut(s) | 14, 130, 133, 496, 499 |
| ApoI | RAATTY | 1 cut(s) | 249 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 719 |
| AspS9I | GGNCC | 3 cut(s) | 333, 424, 528 |
| AsuC2I | CCSGG | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 5 cut(s) | 74, 131, 338, 610, 659 |
| AvaI | CYCGRG | 1 cut(s) | 281 |
| AvaII | GGWCC | 3 cut(s) | 333, 424, 528 |
| BaeGI | GKGCMC | 2 cut(s) | 550, 869 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BbsI | GAAGAC | 1 cut(s) | 755 |
| Bbv12I | GWGCWC | 3 cut(s) | 168, 550, 739 |
| BbvCI | CCTCAGC | 1 cut(s) | 955 |
| BbvI | GCAGC | 4 cut(s) | 120, 142, 483, 511 |
| BccI | CCATC | 4 cut(s) | 52, 248, 413, 949 |
| BciT130I | CCWGG | 1 cut(s) | 117 |
| BcnI | CCSGG | 1 cut(s) | 337 |
| BcoDI | GTCTC | 1 cut(s) | 54 |
| BfaI | CTAG | 1 cut(s) | 674 |
| BfmI | CTRYAG | 3 cut(s) | 15, 497, 812 |
| BglII | AGATCT | 1 cut(s) | 964 |
| BisI | GCNGC | 5 cut(s) | 15, 131, 134, 497, 500 |
| BlsI | GCNGC | 5 cut(s) | 16, 132, 135, 498, 501 |
| BmcAI | AGTACT | 2 cut(s) | 174, 392 |
| Bme1390I | CCNGG | 2 cut(s) | 117, 337 |
| Bme18I | GGWCC | 3 cut(s) | 333, 424, 528 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 46 |
| BmeT110I | CYCGRG | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 3 cut(s) | 333, 424, 528 |
| BmiI | GGNNCC | 4 cut(s) | 111, 335, 425, 426 |
| BmrFI | CCNGG | 2 cut(s) | 117, 337 |
| BmrI | ACTGGG | 2 cut(s) | 896, 1017 |
| BmsI | GCATC | 5 cut(s) | 10, 314, 748, 798, 968 |
| BmuI | ACTGGG | 2 cut(s) | 896, 1017 |
| BpiI | GAAGAC | 1 cut(s) | 755 |
| Bpu10I | CCTNAGC | 1 cut(s) | 955 |
| BpuEI | CTTGAG | 2 cut(s) | 21, 880 |
| BpuMI | CCSGG | 1 cut(s) | 337 |
| BsaBI | GATNNNNATC | 1 cut(s) | 30 |
| BsaI | GGTCTC | 1 cut(s) | 54 |
| BsaJI | CCNNGG | 2 cut(s) | 483, 621 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 83 |
| Bse1I | ACTGG | 3 cut(s) | 477, 902, 1023 |
| Bse3DI | GCAATG | 2 cut(s) | 649, 1023 |
| Bse8I | GATNNNNATC | 1 cut(s) | 30 |
| BseBI | CCWGG | 1 cut(s) | 117 |
| BseDI | CCNNGG | 2 cut(s) | 483, 621 |
| BseGI | GGATG | 1 cut(s) | 424 |
| BseJI | GATNNNNATC | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BseMI | GCAATG | 2 cut(s) | 649, 1023 |
| BseMII | CTCAG | 3 cut(s) | 65, 732, 969 |
| BseNI | ACTGG | 3 cut(s) | 477, 902, 1023 |
| BseSI | GKGCMC | 2 cut(s) | 550, 869 |
| BseXI | GCAGC | 4 cut(s) | 120, 142, 483, 511 |
| BseYI | CCCAGC | 1 cut(s) | 919 |
| BsgI | GTGCAG | 1 cut(s) | 956 |
| BshFI | GGCC | 1 cut(s) | 995 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsiHKAI | GWGCWC | 3 cut(s) | 168, 550, 739 |
| BsiHKCI | CYCGRG | 1 cut(s) | 281 |
| BsiSI | CCGG | 1 cut(s) | 337 |
| BslFI | GGGAC | 2 cut(s) | 319, 437 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BsmAI | GTCTC | 1 cut(s) | 54 |
| BsmFI | GGGAC | 2 cut(s) | 319, 437 |
| BsnI | GGCC | 1 cut(s) | 995 |
| Bso31I | GGTCTC | 1 cut(s) | 54 |
| BsoBI | CYCGRG | 1 cut(s) | 281 |
| Bsp1286I | GDGCHC | 4 cut(s) | 168, 550, 739, 869 |
| Bsp1407I | TGTACA | 1 cut(s) | 453 |
| Bsp143I | GATC | 1 cut(s) | 964 |
| BspACI | CCGC | 2 cut(s) | 396, 979 |
| BspANI | GGCC | 1 cut(s) | 995 |
| BspCNI | CTCAG | 3 cut(s) | 64, 733, 968 |
| BspLI | GGNNCC | 4 cut(s) | 111, 335, 425, 426 |
| BspMAI | CTGCAG | 2 cut(s) | 19, 501 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BspTNI | GGTCTC | 1 cut(s) | 54 |
| BsrDI | GCAATG | 2 cut(s) | 649, 1023 |
| BsrGI | TGTACA | 1 cut(s) | 453 |
| BsrI | ACTGG | 3 cut(s) | 477, 902, 1023 |
| BssECI | CCNNGG | 2 cut(s) | 483, 621 |
| BssMI | GATC | 1 cut(s) | 964 |
| BssT1I | CCWWGG | 2 cut(s) | 483, 621 |
| Bst2UI | CCWGG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 1 cut(s) | 199 |
| Bst6I | CTCTTC | 2 cut(s) | 534, 641 |
| BstAUI | TGTACA | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 1 cut(s) | 494 |
| BstDEI | CTNAG | 4 cut(s) | 51, 741, 955, 1004 |
| BstF5I | GGATG | 1 cut(s) | 424 |
| BstKTI | GATC | 1 cut(s) | 967 |
| BstMAI | GTCTC | 1 cut(s) | 54 |
| BstMBI | GATC | 1 cut(s) | 964 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstNI | CCWGG | 1 cut(s) | 117 |
| BstSCI | CCNGG | 2 cut(s) | 115, 335 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 497, 812 |
| BstSLI | GKGCMC | 2 cut(s) | 550, 869 |
| BstV1I | GCAGC | 4 cut(s) | 120, 142, 483, 511 |
| BstV2I | GAAGAC | 1 cut(s) | 755 |
| BstX2I | RGATCY | 1 cut(s) | 964 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 484, 590 |
| BstYI | RGATCY | 1 cut(s) | 964 |
| BsuRI | GGCC | 1 cut(s) | 995 |
| BtsCI | GGATG | 1 cut(s) | 424 |
| BtsIMutI | CAGTG | 1 cut(s) | 1030 |
| Cac8I | GCNNGC | 1 cut(s) | 494 |
| CaiI | CAGNNNCTG | 2 cut(s) | 23, 133 |
| Cfr13I | GGNCC | 3 cut(s) | 333, 424, 528 |
| CsiI | ACCWGGT | 1 cut(s) | 115 |
| Csp6I | GTAC | 3 cut(s) | 173, 391, 454 |
| CviAII | CATG | 5 cut(s) | 447, 517, 590, 712, 912 |
| CviQI | GTAC | 3 cut(s) | 173, 391, 454 |
| DdeI | CTNAG | 4 cut(s) | 51, 741, 955, 1004 |
| DpnI | GATC | 1 cut(s) | 966 |
| DpnII | GATC | 1 cut(s) | 964 |
| DraIII | CACNNNGTG | 1 cut(s) | 119 |
| DriI | GACNNNNNGTC | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 2 cut(s) | 534, 641 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 46 |
| EarI | CTCTTC | 2 cut(s) | 534, 641 |
| Eco130I | CCWWGG | 2 cut(s) | 483, 621 |
| Eco31I | GGTCTC | 1 cut(s) | 54 |
| Eco32I | GATATC | 1 cut(s) | 616 |
| Eco47I | GGWCC | 3 cut(s) | 333, 424, 528 |
| Eco57I | CTGAAG | 1 cut(s) | 1032 |
| Eco88I | CYCGRG | 1 cut(s) | 281 |
| EcoO109I | RGGNCCY | 1 cut(s) | 424 |
| EcoRII | CCWGG | 1 cut(s) | 115 |
| EcoRV | GATATC | 1 cut(s) | 616 |
| EcoT14I | CCWWGG | 2 cut(s) | 483, 621 |
| EcoT22I | ATGCAT | 2 cut(s) | 307, 518 |
| ErhI | CCWWGG | 2 cut(s) | 483, 621 |
| FaeI | CATG | 5 cut(s) | 450, 520, 593, 715, 915 |
| FaqI | GGGAC | 2 cut(s) | 319, 437 |
| FatI | CATG | 5 cut(s) | 446, 516, 589, 711, 911 |
| Fnu4HI | GCNGC | 5 cut(s) | 15, 131, 134, 497, 500 |
| FokI | GGATG | 1 cut(s) | 431 |
| Fsp4HI | GCNGC | 5 cut(s) | 15, 131, 134, 497, 500 |
| FspBI | CTAG | 1 cut(s) | 674 |
| GluI | GCNGC | 5 cut(s) | 15, 131, 134, 497, 500 |
| GsaI | CCCAGC | 1 cut(s) | 923 |
| HaeIII | GGCC | 1 cut(s) | 995 |
| HapII | CCGG | 1 cut(s) | 337 |
| Hin1II | CATG | 5 cut(s) | 450, 520, 593, 715, 915 |
| HincII | GTYRAC | 1 cut(s) | 709 |
| HindII | GTYRAC | 1 cut(s) | 709 |
| HinfI | GANTC | 4 cut(s) | 284, 327, 371, 792 |
| HpaII | CCGG | 1 cut(s) | 337 |
| HphI | GGTGA | 5 cut(s) | 74, 131, 338, 610, 659 |
| Hpy166II | GTNNAC | 2 cut(s) | 548, 709 |
| Hpy188I | TCNGA | 9 cut(s) | 54, 78, 362, 579, 664, 725, 882, 964, 1012 |
| Hpy188III | TCNNGA | 5 cut(s) | 38, 183, 244, 281, 805 |
| Hpy8I | GTNNAC | 2 cut(s) | 548, 709 |
| HpyAV | CCTTC | 2 cut(s) | 566, 709 |
| HpyCH4III | ACNGT | 1 cut(s) | 199 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 741, 955, 1004 |
| Hsp92II | CATG | 5 cut(s) | 450, 520, 593, 715, 915 |
| KflI | GGGWCCC | 1 cut(s) | 424 |
| Kzo9I | GATC | 1 cut(s) | 964 |
| LmnI | GCTCC | 1 cut(s) | 163 |
| Lsp1109I | GCAGC | 4 cut(s) | 120, 142, 483, 511 |
| LweI | GCATC | 5 cut(s) | 10, 314, 748, 798, 968 |
| MabI | ACCWGGT | 1 cut(s) | 115 |
| MaeI | CTAG | 1 cut(s) | 674 |
| MaeIII | GTNAC | 1 cut(s) | 285 |
| MalI | GATC | 1 cut(s) | 966 |
| MboI | GATC | 1 cut(s) | 964 |
| MboII | GAAGA | 7 cut(s) | 284, 422, 551, 572, 628, 760, 959 |
| MfeI | CAATTG | 3 cut(s) | 461, 523, 684 |
| MflI | RGATCY | 1 cut(s) | 964 |
| MhlI | GDGCHC | 4 cut(s) | 168, 550, 739, 869 |
| MluCI | AATT | 5 cut(s) | 87, 249, 461, 523, 684 |
| MlyI | GAGTC | 3 cut(s) | 293, 336, 380 |
| MmeI | TCCRAC | 1 cut(s) | 748 |
| MnlI | CCTC | 9 cut(s) | 45, 148, 179, 313, 697, 738, 833, 855, 964 |
| Mph1103I | ATGCAT | 2 cut(s) | 307, 518 |
| MroXI | GAANNNNTTC | 1 cut(s) | 719 |
| MseI | TTAA | 2 cut(s) | 342, 990 |
| MslI | CAYNNNNRTG | 2 cut(s) | 588, 840 |
| MspA1I | CMGCKG | 2 cut(s) | 14, 133 |
| MspI | CCGG | 1 cut(s) | 337 |
| MspR9I | CCNGG | 2 cut(s) | 117, 337 |
| MunI | CAATTG | 3 cut(s) | 461, 523, 684 |
| MvaI | CCWGG | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NciI | CCSGG | 1 cut(s) | 337 |
| NdeII | GATC | 1 cut(s) | 964 |
| NlaIII | CATG | 5 cut(s) | 450, 520, 593, 715, 915 |
| NlaIV | GGNNCC | 4 cut(s) | 111, 335, 425, 426 |
| NmuCI | GTSAC | 1 cut(s) | 285 |
| NsiI | ATGCAT | 2 cut(s) | 307, 518 |
| OliI | CACNNNNGTG | 1 cut(s) | 840 |
| PdmI | GAANNNNTTC | 1 cut(s) | 719 |
| PfeI | GAWTC | 1 cut(s) | 792 |
| PkrI | GCNGC | 5 cut(s) | 16, 132, 135, 498, 501 |
| PleI | GAGTC | 3 cut(s) | 292, 335, 379 |
| PpsI | GAGTC | 3 cut(s) | 292, 335, 379 |
| PpuMI | RGGWCCY | 1 cut(s) | 424 |
| Psp5II | RGGWCCY | 1 cut(s) | 424 |
| Psp6I | CCWGG | 1 cut(s) | 115 |
| PspFI | CCCAGC | 1 cut(s) | 919 |
| PspGI | CCWGG | 1 cut(s) | 115 |
| PspN4I | GGNNCC | 4 cut(s) | 111, 335, 425, 426 |
| PspPI | GGNCC | 3 cut(s) | 333, 424, 528 |
| PspPPI | RGGWCCY | 1 cut(s) | 424 |
| PstI | CTGCAG | 2 cut(s) | 19, 501 |
| PstNI | CAGNNNCTG | 2 cut(s) | 23, 133 |
| PsuI | RGATCY | 1 cut(s) | 964 |
| PvuII | CAGCTG | 2 cut(s) | 14, 133 |
| RsaI | GTAC | 3 cut(s) | 174, 392, 455 |
| RsaNI | GTAC | 3 cut(s) | 173, 391, 454 |
| RseI | CAYNNNNRTG | 2 cut(s) | 588, 840 |
| SaqAI | TTAA | 2 cut(s) | 342, 990 |
| SatI | GCNGC | 5 cut(s) | 15, 131, 134, 497, 500 |
| Sau3AI | GATC | 1 cut(s) | 964 |
| Sau96I | GGNCC | 3 cut(s) | 333, 424, 528 |
| ScaI | AGTACT | 2 cut(s) | 174, 392 |
| SchI | GAGTC | 3 cut(s) | 293, 336, 380 |
| ScrFI | CCNGG | 2 cut(s) | 117, 337 |
| SduI | GDGCHC | 4 cut(s) | 168, 550, 739, 869 |
| SexAI | ACCWGGT | 1 cut(s) | 115 |
| SfaNI | GCATC | 5 cut(s) | 10, 314, 748, 798, 968 |
| SfcI | CTRYAG | 3 cut(s) | 15, 497, 812 |
| SinI | GGWCC | 3 cut(s) | 333, 424, 528 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 588, 840 |
| SmlI | CTYRAG | 2 cut(s) | 36, 859 |
| SmoI | CTYRAG | 2 cut(s) | 36, 859 |
| Sse9I | AATT | 5 cut(s) | 87, 249, 461, 523, 684 |
| SsiI | CCGC | 2 cut(s) | 396, 979 |
| SspMI | CTAG | 1 cut(s) | 674 |
| StyD4I | CCNGG | 2 cut(s) | 115, 335 |
| StyI | CCWWGG | 2 cut(s) | 483, 621 |
| TaaI | ACNGT | 1 cut(s) | 199 |
| TaqI | TCGA | 1 cut(s) | 804 |
| TasI | AATT | 5 cut(s) | 87, 249, 461, 523, 684 |
| TatI | WGTACW | 3 cut(s) | 172, 390, 453 |
| TfiI | GAWTC | 1 cut(s) | 792 |
| Tru1I | TTAA | 2 cut(s) | 342, 990 |
| Tru9I | TTAA | 2 cut(s) | 342, 990 |
| TscAI | CASTG | 1 cut(s) | 1030 |
| TseFI | GTSAC | 1 cut(s) | 285 |
| TseI | GCWGC | 5 cut(s) | 14, 130, 133, 496, 499 |
| Tsp45I | GTSAC | 1 cut(s) | 285 |
| TspDTI | ATGAA | 5 cut(s) | 423, 522, 533, 578, 728 |
| TspGWI | ACGGA | 2 cut(s) | 176, 624 |
| TspRI | CASTG | 1 cut(s) | 1030 |
| VneI | GTGCAC | 1 cut(s) | 546 |
| VpaK11BI | GGWCC | 3 cut(s) | 333, 424, 528 |
| XapI | RAATTY | 1 cut(s) | 249 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 909 |
| XmnI | GAANNNNTTC | 1 cut(s) | 719 |
| XspI | CTAG | 1 cut(s) | 674 |
| ZrmI | AGTACT | 2 cut(s) | 174, 392 |
| Zsp2I | ATGCAT | 2 cut(s) | 307, 518 |