Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

41835071 .. 41836037

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0342200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCTTGACGAATGTGAAGCATTGCTGGCTTCAGCAGCAGCTATGCAGGTCCTGTTGCTGAGGATATGTTCCATTAGCAAGCAACAATTATGGGTCCAGCCGACAACCCATTTACTGGAGAAAGTTTTCTGTGCAGGGAAGTCAGGAATTAGGTTGAACTGGATGAGGAGACTTAAAGTAGCCCTTGGCGCAGCAAGAGGACATCTTCAAAGAGCTAATGTAAAACTCTTGGTTTACCATATTGCAATAGTAATTGCTAGGCTAGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

10.3

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	157, 209
AluBI	AGCT	2 cut(s)	41, 215
AluI	AGCT	2 cut(s)	41, 215
Alw26I	GTCTC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	35, 38, 191
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	49, 94
AsuNHI	GCTAGC	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	49, 94
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	3 cut(s)	47, 50, 203
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	258, 263
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	36, 39, 192
BlsI	GCNGC	3 cut(s)	37, 40, 193
Bme18I	GGWCC	2 cut(s)	49, 94
BmgT120I	GGNCC	2 cut(s)	49, 94
BmiI	GGNNCC	1 cut(s)	95
BmtI	GCTAGC	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	120, 164
Bse3DI	GCAATG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	120, 164
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	47, 50, 203
BsgI	GTGCAG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	120, 164
BssECI	CCNNGG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	27, 80, 264
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 35, 188, 263
BstV1I	GCAGC	3 cut(s)	47, 50, 203
BtsCI	GGATG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	27, 80, 264
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	49, 94
CviJI	RGCY	7 cut(s)	29, 41, 100, 182, 215, 262, 266
CviKI_1	RGCY	7 cut(s)	29, 41, 100, 182, 215, 262, 266
DdeI	CTNAG	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	49, 94
Eco57I	CTGAAG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaiI	YATR	4 cut(s)	44, 67, 91, 240
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
Fnu4HI	GCNGC	3 cut(s)	36, 39, 192
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	36, 39, 192
FspBI	CTAG	2 cut(s)	258, 263
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	36, 39, 192
GsuI	CTGGAG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	46, 134, 245
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 35, 188, 263
HpyF3I	CTNAG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	189
LpnPI	CCDG	8 cut(s)	11, 32, 65, 101, 110, 120, 129, 145
Lsp1109I	GCAGC	3 cut(s)	47, 50, 203
MaeI	CTAG	2 cut(s)	258, 263
MboII	GAAGA	1 cut(s)	197
MluCI	AATT	3 cut(s)	86, 147, 252
MnlI	CCTC	3 cut(s)	54, 159, 191
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	26, 35, 188, 263
NheI	GCTAGC	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	37, 40, 193
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	49, 94
PspPPI	RGGWCCY	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	3 cut(s)	36, 39, 192
Sau96I	GGNCC	2 cut(s)	49, 94
SetI	ASST	4 cut(s)	43, 51, 155, 217
SinI	GGWCC	2 cut(s)	49, 94
Sse9I	AATT	3 cut(s)	86, 147, 252
SspMI	CTAG	2 cut(s)	258, 263
StyI	CCWWGG	1 cut(s)	184
TasI	AATT	3 cut(s)	86, 147, 252
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	3 cut(s)	35, 38, 191
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	49, 94
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	258, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.