Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

31237096 .. 31237629

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAATGAAGAAGGGGTTCCCAATCGTGCCAATGCAGCATCAGCAGATTCAGAGACTCAGATGATACCTTTAGTCCCTTATCCTGCACATTCAGTACCTCATCCTCCTCCTAATTTATCTGTCTATCAACCCATGGAAGCAGAATTTCAATGGAATGGCGCCAGCGGAAATGGTCATTTTGCTCAATTCCCATTCTTCACCGCTTCCCAGCCTTCTAATCCTGCCGTTGGTATCCCGCCTTTTTCATTCAACCTGAACCAGTCCGCCGAAGATGTTGCTGGAGGAAGTGATGTTGAATTATTGGTAATTGACAGGATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

107

Amino Acids

11.48

Weight (kDa)

4.4

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	4 cut(s)	165, 201, 236, 264
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	149, 250, 296
Alw26I	GTCTC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	18, 160
BmsI	GCATC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	100, 321
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	59
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	4 cut(s)	165, 201, 236, 264
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	18, 160
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	100, 321
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 41
BstV1I	GCAGC	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	100, 321
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	1 cut(s)	211
CviKI_1	RGCY	1 cut(s)	211
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	57
DinI	GGCGCC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	136
FaiI	YATR	1 cut(s)	134
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	36
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	162
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	47, 55
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	52, 60
HpyAV	CCTTC	2 cut(s)	5, 222
HpyCH4V	TGCA	2 cut(s)	35, 86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 41
HpyF3I	CTNAG	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	159
KasI	GGCGCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	96, 175, 221, 234, 264, 266, 272, 298
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	47
MboII	GAAGA	3 cut(s)	20, 187, 281
MluCI	AATT	5 cut(s)	112, 143, 185, 296, 306
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	108, 114, 117, 275
MroXI	GAANNNNTTC	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	35, 41
NarI	GGCGCC	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	132
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	2 cut(s)	18, 160
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	18, 160
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	49
SetI	ASST	3 cut(s)	70, 100, 255
SfaNI	GCATC	1 cut(s)	47
SfoI	GGCGCC	1 cut(s)	160
Sse9I	AATT	5 cut(s)	112, 143, 185, 296, 306
SsiI	CCGC	4 cut(s)	165, 201, 236, 264
SspDI	GGCGCC	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	132
TasI	AATT	5 cut(s)	112, 143, 185, 296, 306
TfiI	GAWTC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	3 cut(s)	17, 21, 234
XapI	RAATTY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.