Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

25295791 .. 25300695

Gene Structure 4905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0268100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATTCCCAGGACGTCTCTCAGAAGAAGGGCTATCTGATTCTGCGCTGGTCACTCGCTCTCCTTTTCCCTATCGTCGCTTTCTCTTCTCTCTCACTTTTCCTCGTCTTAGTCACAGTTTTCGTCTCCAATTCTTCGGTTTCCGTCCCCATTTCGGTTTCGTCTCAGTGCAGGATCGTCTCCAGCAGTGTTGATCTTAAGTCAGCCAAGGTTTGTGAGCTCGGATTGTTCAATTACAAAGCCAAGCATGTGTTTTATCCCTTAGAAGGAAGAAAGTTTCGATGTCGTTATGATTACTATTGGGCTTCTGTTTTTAAGGTGGAGTACCAAGATCAGTCTTCTGGTCAAACTCAGGTTGCACTAGCTGAGGCTCCAAGTGAGGCTCTTCCTCTTAATTGCAGACCTAATTTTGGTGCTGCATGGTTGACCAAAGACAAATTCAAGGTCAATAAGACTTATAACTGCTGGTACACATATGGTGTTTCTCAAGTAAGCTTATATGATGATGGTTTCTTCAGTTGCCAAGCTACAGATCCGTCTACATTTGAAATGATAAGAAGATATTTCATCCTGTCGACAAAGATCTTACGCTCCTGGTTTCTAAGCCAGGAACCAGCCCTGTATTGGAGGTGGGAAACCATAATTGGACTTGTTACTGGTTTTTCAACCGCATTGATCTCAATAAGCTTCTTTAAACTCATGCAACTCTTGAAATCTCAATTGCCTCAAATCTCTGCTAGAAGAATGCTTACACAGTCAATCTCAGTGGTCCTCTTCAGGCGCACTTGTTTTCTCGTGGCATACATCTCTTTTATGGGTTGGTTGGCCATCGAGTTTGGGAAAAGGCTTGGCCTGCCAGAGATTCTCACTCTTCTCAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

294

Amino Acids

33.69

Weight (kDa)

9.38

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AatII	GACGTC	1 cut(s)	18
AccI	GTMKAC	2 cut(s)	539, 575
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	2 cut(s)	182, 527
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	499, 760
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	326, 470
AfiI	CCNNNNNNNGG	4 cut(s)	154, 266, 410, 624
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	232, 442, 548, 666, 712
AjnI	CCWGG	3 cut(s)	9, 593, 606
AjuI	GAANNNNNNNTTGG	4 cut(s)	422, 454, 627, 659
AluBI	AGCT	5 cut(s)	220, 365, 495, 527, 687
AluI	AGCT	5 cut(s)	220, 365, 495, 527, 687
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	4 cut(s)	22, 130, 168, 184
AlwI	GGATC	2 cut(s)	182, 527
AoxI	GGCC	2 cut(s)	825, 850
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AspLEI	GCGC	2 cut(s)	48, 783
AspS9I	GGNCC	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	500, 836
BciT130I	CCWGG	3 cut(s)	11, 595, 608
BcoDI	GTCTC	4 cut(s)	22, 130, 168, 184
BfaI	CTAG	2 cut(s)	362, 738
BfmI	CTRYAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	11, 595, 608
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	2 cut(s)	372, 612
BmrFI	CCNGG	3 cut(s)	11, 595, 608
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	471, 860
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	9, 207
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 266, 410, 624
Bse1I	ACTGG	1 cut(s)	661
BseBI	CCWGG	3 cut(s)	11, 595, 608
BseDI	CCNNGG	2 cut(s)	9, 207
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	154, 266, 410, 624
BseMII	CTCAG	5 cut(s)	35, 179, 357, 365, 777
BseNI	ACTGG	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	827, 852
BsiHKAI	GWGCWC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	4 cut(s)	154, 266, 410, 624
BsmAI	GTCTC	4 cut(s)	22, 130, 168, 184
BsmBI	CGTCTC	4 cut(s)	22, 130, 168, 184
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	827, 852
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	2 cut(s)	827, 852
BspCNI	CTCAG	5 cut(s)	34, 178, 358, 364, 776
BspLI	GGNNCC	2 cut(s)	372, 612
BspPI	GGATC	2 cut(s)	182, 527
BspQI	GCTCTTC	1 cut(s)	390
BspTI	CTTAAG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	2 cut(s)	9, 207
BssMI	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	794
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	3 cut(s)	11, 595, 608
Bst4CI	ACNGT	2 cut(s)	118, 756
Bst6I	CTCTTC	4 cut(s)	91, 390, 779, 876
BstACI	GRCGYC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	854
BstDEI	CTNAG	8 cut(s)	21, 109, 165, 262, 351, 366, 602, 763
BstF5I	GGATG	1 cut(s)	567
BstHHI	GCGC	2 cut(s)	48, 783
BstKTI	GATC	6 cut(s)	177, 196, 334, 535, 585, 678
BstMAI	GTCTC	4 cut(s)	22, 130, 168, 184
BstMBI	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	853
BstNI	CCWGG	3 cut(s)	11, 595, 608
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	9, 593, 606
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	2 cut(s)	532, 582
BstYI	RGATCY	2 cut(s)	532, 582
BsuRI	GGCC	2 cut(s)	827, 852
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	173, 193, 771
Cac8I	GCNNGC	1 cut(s)	854
CfoI	GCGC	2 cut(s)	48, 783
Cfr13I	GGNCC	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	325, 469
CspCI	CAANNNNNGTGG	2 cut(s)	747, 782
CviAII	CATG	3 cut(s)	248, 420, 700
CviQI	GTAC	2 cut(s)	325, 469
DdeI	CTNAG	8 cut(s)	21, 109, 165, 262, 351, 366, 602, 763
DpnI	GATC	6 cut(s)	176, 195, 333, 534, 584, 677
DpnII	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	4 cut(s)	91, 390, 779, 876
EarI	CTCTTC	4 cut(s)	91, 390, 779, 876
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	499, 760
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	9, 593, 606
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	4 cut(s)	22, 130, 168, 184
FaeI	CATG	3 cut(s)	251, 423, 703
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	247, 419, 699
FauNDI	CATATG	1 cut(s)	475
FblI	GTMKAC	2 cut(s)	539, 575
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	2 cut(s)	362, 738
GlaI	GCGC	2 cut(s)	47, 782
GluI	GCNGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	827, 852
HhaI	GCGC	2 cut(s)	48, 783
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	251, 423, 703
Hin6I	GCGC	2 cut(s)	46, 781
HinP1I	GCGC	2 cut(s)	46, 781
HincII	GTYRAC	2 cut(s)	426, 576
HindII	GTYRAC	2 cut(s)	426, 576
HindIII	AAGCTT	2 cut(s)	493, 685
HinfI	GANTC	3 cut(s)	5, 40, 862
Hpy166II	GTNNAC	4 cut(s)	426, 471, 540, 576
Hpy188I	TCNGA	3 cut(s)	24, 39, 224
Hpy188III	TCNNGA	1 cut(s)	709
Hpy8I	GTNNAC	4 cut(s)	426, 471, 540, 576
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	22, 260
HpyCH4III	ACNGT	2 cut(s)	118, 756
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	5 cut(s)	171, 359, 399, 419, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	853
HpyF3I	CTNAG	8 cut(s)	21, 109, 165, 262, 351, 366, 602, 763
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	251, 423, 703
HspAI	GCGC	2 cut(s)	46, 781
Kzo9I	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	376, 596
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	362, 738
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	51, 112, 652
MalI	GATC	6 cut(s)	176, 195, 333, 534, 584, 677
MboI	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	2 cut(s)	532, 582
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	7 cut(s)	130, 232, 394, 406, 437, 642, 719
MluNI	TGGCCA	1 cut(s)	827
MnlI	CCTC	7 cut(s)	113, 361, 373, 399, 621, 735, 782
Mox20I	TGGCCA	1 cut(s)	827
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	4 cut(s)	198, 315, 393, 693
Msp20I	TGGCCA	1 cut(s)	827
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	11, 595, 608
MunI	CAATTG	1 cut(s)	719
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	3 cut(s)	11, 595, 608
MwoI	GCNNNNNNNGC	1 cut(s)	853
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
NlaIII	CATG	3 cut(s)	251, 423, 703
NlaIV	GGNNCC	2 cut(s)	372, 612
NmuCI	GTSAC	2 cut(s)	51, 112
NspI	RCATGY	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	5, 40, 862
PkrI	GCNGC	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	9, 593, 606
PspGI	CCWGG	3 cut(s)	9, 593, 606
PspN4I	GGNNCC	2 cut(s)	372, 612
PspPI	GGNCC	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	532, 582
RsaI	GTAC	2 cut(s)	326, 470
RsaNI	GTAC	2 cut(s)	325, 469
SacI	GAGCTC	1 cut(s)	222
SalI	GTCGAC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	198, 315, 393, 693
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	6 cut(s)	174, 193, 331, 532, 582, 675
Sau96I	GGNCC	1 cut(s)	769
ScrFI	CCNGG	3 cut(s)	11, 595, 608
SduI	GDGCHC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	769
SmlI	CTYRAG	3 cut(s)	197, 486, 875
SmoI	CTYRAG	3 cut(s)	197, 486, 875
Sse9I	AATT	7 cut(s)	130, 232, 394, 406, 437, 642, 719
SsiI	CCGC	1 cut(s)	669
SspMI	CTAG	2 cut(s)	362, 738
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	9, 593, 606
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	118, 756
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	280, 575, 831
TasI	AATT	7 cut(s)	130, 232, 394, 406, 437, 642, 719
TfiI	GAWTC	3 cut(s)	5, 40, 862
Tru1I	TTAA	4 cut(s)	198, 315, 393, 693
Tru9I	TTAA	4 cut(s)	198, 315, 393, 693
TscAI	CASTG	3 cut(s)	173, 193, 771
TseFI	GTSAC	2 cut(s)	51, 112
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	2 cut(s)	51, 112
TspDTI	ATGAA	1 cut(s)	556
TspGWI	ACGGA	2 cut(s)	133, 525
TspRI	CASTG	3 cut(s)	173, 193, 771
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621
XmiI	GTMKAC	2 cut(s)	539, 575
XspI	CTAG	2 cut(s)	362, 738
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.