Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

51814441 .. 51817572

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0371300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGGTGATGAAGTCATTATCCGATGTTGCAGACTCCAAGCAACAACAAGAACAGCAGCAGCAACAACAACATTTCCATGTTTTGGCTGTAGATGACAGTGTTATAGACAGGAAGCTATTGGAGAGGCTCCTCAAAGGTTCTTCATACAAAGTGACTTGTGTGGACTCTGGGGATGAAGCTCTTAAATATCTGGGTTTGATTGATCATGATGACCAAAAACCTACAGATTCATCTTCATTCACTTCCCCATATCCTCAGCAGTCGTCATCAGAACAAGAGGGCTCAAAAGTCATCAATCTGATCATGACAGACTACTGTATGCCCGGGATGAGCGGCTATGATTTGCTGAAAAGAGTCAAGGGATCTTCTTGGAAAGATATACCAGTCGTAGTCATGTCATCAGAGAATGTTCCTTCAAGAATTAACATGTGCTTGGAAGAAGGGGCTGAGGAGTTTCTCTTAAAGCCACTTCAGATATCAGATTTGAAGAAGCTTCAGCCTTACTTGCTTAAAACCCTTGACCAACCTTCTTCTCGTGATAGCAGCATTGACGGTAGCAACAATCTCGTAGTTGAGGAGATCGGTGATGATGATCACGATGGCCAAAGCAAAATCAATGAGGAGATCAATAAGGGTAGCGTGATGAATAATACTAATGCTAGTAGTATTAGCAAGAGGAAGGCAGTAACTACTGAAACATCAGAGAGAATACCCAAGATGAAAGGTTTAGTTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

4.89

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	97 - 165	5e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	336
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	604
AcuI	CTGAAG	2 cut(s)	458, 482
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	2 cut(s)	420, 490
AluBI	AGCT	3 cut(s)	118, 182, 496
AluI	AGCT	3 cut(s)	118, 182, 496
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	3 cut(s)	58, 61, 546
AsuC2I	CCSGG	2 cut(s)	327, 328
AsuHPI	GGTGA	2 cut(s)	19, 599
AvaI	CYCGRG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	537
BbvCI	CCTCAGC	2 cut(s)	258, 450
BbvI	GCAGC	3 cut(s)	70, 73, 558
BccI	CCATC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BclI	TGATCA	3 cut(s)	205, 303, 595
BcnI	CCSGG	2 cut(s)	327, 328
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	2 cut(s)	90, 225
BisI	GCNGC	4 cut(s)	59, 62, 337, 547
BlsI	GCNGC	4 cut(s)	60, 63, 338, 548
Bme1390I	CCNGG	2 cut(s)	327, 328
BmeT110I	CYCGRG	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	327, 328
Bpu10I	CCTNAGC	2 cut(s)	258, 450
BpuMI	CCSGG	2 cut(s)	327, 328
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	181, 336
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	272, 441
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	4 cut(s)	122, 467, 593, 638
BseXI	GCAGC	3 cut(s)	70, 73, 558
BshFI	GGCC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	2 cut(s)	271, 442
BspHI	TCATGA	2 cut(s)	208, 306
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	101, 320, 557
BstDEI	CTNAG	2 cut(s)	258, 450
BstF5I	GGATG	2 cut(s)	181, 336
BstKTI	GATC	6 cut(s)	208, 306, 368, 585, 598, 630
BstMBI	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	325, 326
BstSFI	CTRYAG	2 cut(s)	90, 225
BstV1I	GCAGC	3 cut(s)	70, 73, 558
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	181, 336
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	2 cut(s)	208, 306
Cfr9I	CCCGGG	1 cut(s)	326
CviAII	CATG	5 cut(s)	80, 209, 307, 397, 430
DdeI	CTNAG	2 cut(s)	258, 450
DpnI	GATC	6 cut(s)	207, 305, 367, 584, 597, 629
DpnII	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
EaeI	YGGCCR	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	480
Eco57I	CTGAAG	2 cut(s)	458, 482
Eco88I	CYCGRG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	5 cut(s)	83, 212, 310, 400, 433
FatI	CATG	5 cut(s)	79, 208, 306, 396, 429
FbaI	TGATCA	3 cut(s)	205, 303, 595
Fnu4HI	GCNGC	4 cut(s)	59, 62, 337, 547
FokI	GGATG	2 cut(s)	188, 343
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	59, 62, 337, 547
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	4 cut(s)	59, 62, 337, 547
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	5 cut(s)	83, 212, 310, 400, 433
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	4 cut(s)	35, 167, 230, 357
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	19, 599
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	7 cut(s)	25, 274, 303, 406, 477, 484, 706
Hpy188III	TCNNGA	5 cut(s)	209, 307, 420, 539, 599
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	426, 437, 540, 676
HpyCH4III	ACNGT	3 cut(s)	101, 320, 557
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	2 cut(s)	258, 450
Hsp92II	CATG	5 cut(s)	83, 212, 310, 400, 433
Ksp22I	TGATCA	3 cut(s)	205, 303, 595
Kzo9I	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	97, 156, 179, 340, 399
Lsp1109I	GCAGC	3 cut(s)	70, 73, 558
MaeI	CTAG	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	154, 688
MalI	GATC	6 cut(s)	207, 305, 367, 584, 597, 629
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
MboII	GAAGA	6 cut(s)	135, 228, 360, 452, 502, 525
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	29, 161, 366
MnlI	CCTC	8 cut(s)	120, 143, 267, 274, 445, 571, 616, 672
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	4 cut(s)	186, 426, 464, 513
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	327, 328
MwoI	GCNNNNNNNGC	1 cut(s)	508
NciI	CCSGG	2 cut(s)	327, 328
NdeII	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
NlaIII	CATG	5 cut(s)	83, 212, 310, 400, 433
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	2 cut(s)	208, 306
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	60, 63, 338, 548
PleI	GAGTC	3 cut(s)	29, 161, 365
PpsI	GAGTC	3 cut(s)	29, 161, 365
PscI	ACATGT	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	4 cut(s)	186, 426, 464, 513
SatI	GCNGC	4 cut(s)	59, 62, 337, 547
Sau3AI	GATC	6 cut(s)	205, 303, 365, 582, 595, 627
SchI	GAGTC	3 cut(s)	29, 161, 366
ScrFI	CCNGG	2 cut(s)	327, 328
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	8 cut(s)	9, 120, 142, 184, 226, 498, 532, 730
SfcI	CTRYAG	2 cut(s)	90, 225
SmaI	CCCGGG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	325, 326
TaaI	ACNGT	3 cut(s)	101, 320, 557
TasI	AATT	1 cut(s)	423
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	186, 426, 464, 513
Tru9I	TTAA	4 cut(s)	186, 426, 464, 513
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	58, 61, 546
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	7 cut(s)	26, 135, 192, 222, 228, 662, 737
TspMI	CCCGGG	1 cut(s)	326
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	85
XceI	RCATGY	1 cut(s)	433
XmaI	CCCGGG	1 cut(s)	326
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.