Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

31195469 .. 31197042

Gene Structure 1574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGCATGATAGATAGTGAAAGTATGGAGCAGTCGCACAAGGCACACAAGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGATTCAAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGAAGGGAAGTAGAGGCGGGTTCAGTTTGTGGATCAGTGCCCCAATGATATCAATGGAAACATTTCAGTTCCTTAATATATTGCAGAGGCGGGTTCAGTTTGTGGATCAGTGCCCCAATGATATCAATGGTATGATTGATGCCGCAAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGACTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAACTGAGGAAAACAAAGCAGAATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAATTTGTTTTATTTATCAGGTTTTATTCATCAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTTCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATGTCACTCCCCCTGAAAAAGTGCGCTTGAATAATAACTGGGTACTTTGGAAGCCACGGCTAGCGAGATGGTATTCACAAATGAGTGAAAGTGAGTCGGGTTTTGATGTGGATTGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

273

Amino Acids

31.91

Weight (kDa)

9.66

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	214 - 241	5.4e-08	AARP2CN (NUC121) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	216, 289, 342
AclWI	GGATC	2 cut(s)	239, 312
AcsI	RAATTY	2 cut(s)	347, 514
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	102, 395, 481, 698, 730
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	3 cut(s)	135, 384, 554
AluI	AGCT	3 cut(s)	135, 384, 554
AlwI	GGATC	2 cut(s)	239, 312
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	347, 514
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	726
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	458
AsuNHI	GCTAGC	1 cut(s)	760
BaeGI	GKGCMC	2 cut(s)	241, 314
BccI	CCATC	4 cut(s)	371, 542, 654, 762
BceAI	ACGGC	1 cut(s)	773
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	2 cut(s)	683, 761
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	2 cut(s)	328, 475
BmtI	GCTAGC	1 cut(s)	764
BmuI	ACTGGG	1 cut(s)	748
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	69, 117, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	69, 117, 755
BseGI	GGATG	2 cut(s)	646, 670
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	743
BseSI	GKGCMC	2 cut(s)	241, 314
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	37, 151
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	37, 151
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	241, 314
Bsp143I	GATC	4 cut(s)	159, 231, 304, 688
BspACI	CCGC	3 cut(s)	216, 289, 342
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	67
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	2 cut(s)	239, 312
BsrDI	GCAATG	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	3 cut(s)	69, 117, 755
BssMI	GATC	4 cut(s)	159, 231, 304, 688
BssT1I	CCWWGG	2 cut(s)	69, 117
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	646, 670
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	4 cut(s)	162, 234, 307, 691
BstMBI	GATC	4 cut(s)	159, 231, 304, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 359
BstSCI	CCNGG	1 cut(s)	53
BstSLI	GKGCMC	2 cut(s)	241, 314
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	646, 670
BtsIMutI	CAGTG	2 cut(s)	241, 314
Cac8I	GCNNGC	1 cut(s)	762
CfoI	GCGC	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	4 cut(s)	7, 191, 434, 451
CviJI	RGCY	8 cut(s)	74, 88, 135, 384, 554, 620, 754, 760
CviKI_1	RGCY	8 cut(s)	74, 88, 135, 384, 554, 620, 754, 760
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	161, 233, 306, 690
DpnII	GATC	4 cut(s)	159, 231, 304, 688
DraI	TTTAAA	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	69, 117
Eco32I	GATATC	2 cut(s)	249, 322
EcoRV	GATATC	2 cut(s)	249, 322
EcoT14I	CCWWGG	2 cut(s)	69, 117
ErhI	CCWWGG	2 cut(s)	69, 117
FaeI	CATG	4 cut(s)	10, 194, 437, 454
FaqI	GGGAC	2 cut(s)	37, 151
FatI	CATG	4 cut(s)	6, 190, 433, 450
FauI	CCCGC	2 cut(s)	209, 282
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	633, 657
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	683, 761
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	4 cut(s)	10, 194, 437, 454
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	3 cut(s)	98, 607, 794
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	458
Hpy188III	TCNNGA	1 cut(s)	532
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	3 cut(s)	283, 427, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 359
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	4 cut(s)	10, 194, 437, 454
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	159, 231, 304, 688
LmnI	GCTCC	2 cut(s)	28, 551
LpnPI	CCDG	6 cut(s)	68, 517, 558, 602, 724, 726
LweI	GCATC	2 cut(s)	328, 475
MaeI	CTAG	2 cut(s)	683, 761
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	4 cut(s)	161, 233, 306, 690
MboI	GATC	4 cut(s)	159, 231, 304, 688
MboII	GAAGA	2 cut(s)	94, 710
MhlI	GDGCHC	2 cut(s)	241, 314
MluCI	AATT	3 cut(s)	347, 514, 556
MlyI	GAGTC	1 cut(s)	803
MnlI	CCTC	3 cut(s)	206, 279, 492
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	4 cut(s)	273, 417, 518, 820
MslI	CAYNNNNRTG	1 cut(s)	675
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	350, 359
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	4 cut(s)	159, 231, 304, 688
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	4 cut(s)	10, 194, 437, 454
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	703
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	98, 607
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
PspN4I	GGNNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	4 cut(s)	273, 417, 518, 820
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	4 cut(s)	159, 231, 304, 688
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	241, 314
SetI	ASST	7 cut(s)	137, 386, 450, 471, 556, 577, 604
SfaNI	GCATC	2 cut(s)	328, 475
SmiMI	CAYNNNNRTG	1 cut(s)	675
Sse9I	AATT	3 cut(s)	347, 514, 556
SsiI	CCGC	3 cut(s)	216, 289, 342
SspMI	CTAG	2 cut(s)	683, 761
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	69, 117
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	604
TasI	AATT	3 cut(s)	347, 514, 556
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	98, 607
Tru1I	TTAA	4 cut(s)	273, 417, 518, 820
Tru9I	TTAA	4 cut(s)	273, 417, 518, 820
TscAI	CASTG	2 cut(s)	241, 314
TseFI	GTSAC	1 cut(s)	703
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	572, 616, 653
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	241, 314
XapI	RAATTY	2 cut(s)	347, 514
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	683, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.