Rorug07G0253100

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
23548201 .. 23551875
3675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0253100.1

Sequence Viewer

Length: 813 bp
ATGAGCTTTCAGGATTTCCGGGATCTGGAAGCGGGCCGCGGGCCGGTTCAGTCCAGGCGAGAGCCGACCCAAGCCTTGGCCTCCGGCATTTTCCAGATCACCACCGCCGTGTCCACGTTTCAGAGGCTCGTCAACACCATCGGTACCCCCAAAGACACGCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGACTACATATTGGGCAATTAGTAAAGGATACTTCAGAAAAACTTAAACAAGCGAGTGAAAGAGATCATCATTCTGATGTTAATGGAAGACAGAAGGTTGCAGATGCTAAGCTTGCAAAAGATTTTCAAGCGGTACTGAGAGATTTTCAGAAAGCTCAACGACTTTCAGCTGAGAGGGAAACGGCATATGCTCCTTTTGTTCCCCAGGCTGTTCTTCCATCAAGCTACACTGCTAGTGAGATAAATGTAACCTCAGATAAGAATCCAGAACAGCGTGCTCTCCTTGTGGAATCGAGAAGACAGGAGGTCTTGCTATTAGACAATGAAATTGCCTTTAACGAGGCTATCATCGAGGAAAGAGAACAAGGAATACAAGAGATCCAGCAGCAAATTGGAGAAGTGAATGAGATTTTTAAAGATCTGGCTATTCTGGTTCATGAACAAGGGACCATGATCGAGGATATCGACTCTAATATTGAGAGTTCTCATGCTGCAACTGCCCAGGCAAAGTCCCACCTTGCGAAGGCCTCAAAGACACAGAGATCAAACTCGTCTCTGACTTGCTTGCTGTTGGTAATATTTGGAATTGTGCTTCTCATTGTGATAATAGTACTCGCAGCTTAA

Protein Analysis

270

Amino Acids

30.07

Weight (kDa)

5.86

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 23 - 158 2.9e-37 Syntaxin-like protein
SNARE PF05739 213 - 265 4.3e-16 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 2 cut(s) 39, 171
AciI CCGC 6 cut(s) 32, 37, 39, 105, 169, 320
AclWI GGATC 2 cut(s) 30, 562
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 3 cut(s) 145, 324, 801
AfiI CCNNNNNNNGG 4 cut(s) 25, 43, 76, 712
AgsI TTSAA 1 cut(s) 317
AhdI GACNNNNNGTC 1 cut(s) 494
AjnI CCWGG 3 cut(s) 53, 393, 690
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 8 cut(s) 6, 166, 178, 301, 344, 359, 414, 809
AluI AGCT 8 cut(s) 6, 166, 178, 301, 344, 359, 414, 809
Alw21I GWGCWC 2 cut(s) 168, 469
Alw26I GTCTC 1 cut(s) 747
AlwI GGATC 2 cut(s) 30, 562
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 4 cut(s) 34, 41, 78, 714
ApeKI GCWGC 4 cut(s) 178, 574, 680, 806
Asp718I GGTACC 1 cut(s) 143
AspS9I GGNCC 3 cut(s) 34, 41, 636
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 636
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 2 cut(s) 283, 493
Bbv12I GWGCWC 2 cut(s) 168, 469
BbvI GCAGC 3 cut(s) 165, 586, 667
BccI CCATC 2 cut(s) 146, 415
BceAI ACGGC 2 cut(s) 92, 387
BciT130I CCWGG 3 cut(s) 55, 395, 692
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 747
BfaI CTAG 1 cut(s) 423
BfuI GTATCC 1 cut(s) 211
BglII AGATCT 1 cut(s) 607
BisI GCNGC 5 cut(s) 37, 179, 575, 681, 807
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 5 cut(s) 38, 180, 576, 682, 808
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 4 cut(s) 20, 55, 395, 692
Bme18I GGWCC 1 cut(s) 636
BmeRI GACNNNNNGTC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 3 cut(s) 34, 41, 636
BmiI GGNNCC 2 cut(s) 145, 637
BmrFI CCNGG 4 cut(s) 20, 55, 395, 692
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 283, 493
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 4 cut(s) 37, 75, 393, 690
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 43, 76, 712
Bse118I RCCGGY 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 3 cut(s) 55, 395, 692
BseDI CCNNGG 4 cut(s) 37, 75, 393, 690
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 4 cut(s) 25, 43, 76, 712
BseMII CTCAG 3 cut(s) 317, 351, 456
BseXI GCAGC 3 cut(s) 165, 586, 667
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 2 cut(s) 39, 171
BshFI GGCC 4 cut(s) 36, 43, 80, 716
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 168, 469
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 3 cut(s) 19, 44, 84
BslFI GGGAC 2 cut(s) 649, 685
BslI CCNNNNNNNGG 4 cut(s) 25, 43, 76, 712
BsmAI GTCTC 1 cut(s) 747
BsmBI CGTCTC 1 cut(s) 747
BsmFI GGGAC 2 cut(s) 649, 685
BsnI GGCC 4 cut(s) 36, 43, 80, 716
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 168, 469
Bsp143I GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 6 cut(s) 32, 37, 39, 105, 169, 320
BspANI GGCC 4 cut(s) 36, 43, 80, 716
BspCNI CTCAG 3 cut(s) 318, 352, 455
BspFNI CGCG 2 cut(s) 39, 171
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 145, 637
BspPI GGATC 2 cut(s) 30, 562
BspT107I GGYRCC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 37, 75, 393, 690
BssMI GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 3 cut(s) 55, 395, 692
BstC8I GCNNGC 5 cut(s) 34, 41, 303, 465, 755
BstDEI CTNAG 4 cut(s) 297, 326, 360, 442
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 710
BstFNI CGCG 2 cut(s) 39, 171
BstKTI GATC 7 cut(s) 25, 99, 256, 570, 610, 645, 734
BstMAI GTCTC 1 cut(s) 747
BstMBI GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
BstMWI GCNNNNNNNGC 2 cut(s) 302, 686
BstNI CCWGG 3 cut(s) 55, 395, 692
BstSCI CCNGG 4 cut(s) 18, 53, 393, 690
BstUI CGCG 2 cut(s) 39, 171
BstV1I GCAGC 3 cut(s) 165, 586, 667
BstV2I GAAGAC 2 cut(s) 283, 493
BstX2I RGATCY 3 cut(s) 22, 567, 607
BstYI RGATCY 3 cut(s) 22, 567, 607
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 4 cut(s) 36, 43, 80, 716
BtgI CCRYGG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 5 cut(s) 34, 41, 303, 465, 755
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 34, 41, 636
Cfr42I CCGCGG 1 cut(s) 40
Csp6I GTAC 3 cut(s) 144, 323, 800
CviAII CATG 3 cut(s) 626, 640, 677
CviQI GTAC 3 cut(s) 144, 323, 800
DdeI CTNAG 4 cut(s) 297, 326, 360, 442
DpnI GATC 7 cut(s) 24, 98, 255, 569, 609, 644, 733
DpnII GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
DraI TTTAAA 1 cut(s) 604
DriI GACNNNNNGTC 1 cut(s) 494
Eam1105I GACNNNNNGTC 1 cut(s) 494
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 636
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoRII CCWGG 3 cut(s) 53, 393, 690
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 747
FaeI CATG 3 cut(s) 629, 643, 680
FaiI YATR 6 cut(s) 198, 376, 378, 627, 641, 678
FaqI GGGAC 2 cut(s) 649, 685
FatI CATG 3 cut(s) 625, 639, 676
FauI CCCGC 2 cut(s) 25, 32
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 5 cut(s) 37, 179, 575, 681, 807
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 37, 179, 575, 681, 807
FspBI CTAG 1 cut(s) 423
GluI GCNGC 5 cut(s) 37, 179, 575, 681, 807
HaeIII GGCC 4 cut(s) 36, 43, 80, 716
HapII CCGG 3 cut(s) 19, 44, 84
Hin1II CATG 3 cut(s) 629, 643, 680
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 3 cut(s) 451, 479, 656
HpaII CCGG 3 cut(s) 19, 44, 84
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 114, 133
Hpy188I TCNGA 6 cut(s) 123, 226, 265, 339, 445, 747
Hpy188III TCNNGA 6 cut(s) 11, 26, 94, 455, 483, 626
Hpy8I GTNNAC 2 cut(s) 114, 133
HpyAV CCTTC 2 cut(s) 277, 706
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 181, 290, 305, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 686
HpyF3I CTNAG 4 cut(s) 297, 326, 360, 442
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 3 cut(s) 629, 643, 680
KpnI GGTACC 1 cut(s) 147
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
LmnI GCTCC 2 cut(s) 171, 385
Lsp1109I GCAGC 3 cut(s) 165, 586, 667
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 436
MalI GATC 7 cut(s) 24, 98, 255, 569, 609, 644, 733
MboI GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
MboII GAAGA 3 cut(s) 288, 395, 498
MflI RGATCY 3 cut(s) 22, 567, 607
MhlI GDGCHC 2 cut(s) 168, 469
MluCI AATT 4 cut(s) 206, 516, 579, 774
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 9 cut(s) 91, 117, 357, 451, 487, 523, 535, 640, 727
MseI TTAA 5 cut(s) 234, 270, 525, 603, 811
MslI CAYNNNNRTG 2 cut(s) 107, 264
MspA1I CMGCKG 2 cut(s) 39, 359
MspI CCGG 3 cut(s) 19, 44, 84
MspR9I CCNGG 4 cut(s) 20, 55, 395, 692
MvaI CCWGG 3 cut(s) 55, 395, 692
MvnI CGCG 2 cut(s) 39, 171
MwoI GCNNNNNNNGC 2 cut(s) 302, 686
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 376
NdeII GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
NlaIII CATG 3 cut(s) 629, 643, 680
NlaIV GGNNCC 2 cut(s) 145, 637
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 625
PceI AGGCCT 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PfeI GAWTC 2 cut(s) 451, 479
PflMI CCANNNNNTGG 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 5 cut(s) 38, 180, 576, 682, 808
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 53, 393, 690
PspGI CCWGG 3 cut(s) 53, 393, 690
PspN4I GGNNCC 2 cut(s) 145, 637
PspPI GGNCC 3 cut(s) 34, 41, 636
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PsuI RGATCY 3 cut(s) 22, 567, 607
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 145, 324, 801
RsaNI GTAC 3 cut(s) 144, 323, 800
RseI CAYNNNNRTG 2 cut(s) 107, 264
SacI GAGCTC 1 cut(s) 168
SacII CCGCGG 1 cut(s) 40
SaqAI TTAA 5 cut(s) 234, 270, 525, 603, 811
SatI GCNGC 5 cut(s) 37, 179, 575, 681, 807
Sau3AI GATC 7 cut(s) 22, 96, 253, 567, 607, 642, 731
Sau96I GGNCC 3 cut(s) 34, 41, 636
ScaI AGTACT 1 cut(s) 801
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 4 cut(s) 20, 55, 395, 692
SduI GDGCHC 2 cut(s) 168, 469
SfaNI GCATC 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 1 cut(s) 636
SmiMI CAYNNNNRTG 2 cut(s) 107, 264
Sse9I AATT 4 cut(s) 206, 516, 579, 774
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 6 cut(s) 32, 37, 39, 105, 169, 320
SspI AATATT 2 cut(s) 664, 768
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 4 cut(s) 18, 53, 393, 690
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 482, 540, 645, 654
TasI AATT 4 cut(s) 206, 516, 579, 774
TatI WGTACW 1 cut(s) 799
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 451, 479
Tru1I TTAA 5 cut(s) 234, 270, 525, 603, 811
Tru9I TTAA 5 cut(s) 234, 270, 525, 603, 811
TscAI CASTG 1 cut(s) 424
TseI GCWGC 4 cut(s) 178, 574, 680, 806
TspDTI ATGAA 3 cut(s) 528, 614, 642
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XspI CTAG 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.