Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 143 |
| AccB1I | GGYRCC | 1 cut(s) | 143 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 76 |
| AccII | CGCG | 2 cut(s) | 39, 171 |
| AciI | CCGC | 6 cut(s) | 32, 37, 39, 105, 169, 320 |
| AclWI | GGATC | 2 cut(s) | 30, 562 |
| AcuI | CTGAAG | 1 cut(s) | 207 |
| AfaI | GTAC | 3 cut(s) | 145, 324, 801 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 25, 43, 76, 712 |
| AgsI | TTSAA | 1 cut(s) | 317 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 494 |
| AjnI | CCWGG | 3 cut(s) | 53, 393, 690 |
| AleI | CACNNNNGTG | 1 cut(s) | 107 |
| AluBI | AGCT | 8 cut(s) | 6, 166, 178, 301, 344, 359, 414, 809 |
| AluI | AGCT | 8 cut(s) | 6, 166, 178, 301, 344, 359, 414, 809 |
| Alw21I | GWGCWC | 2 cut(s) | 168, 469 |
| Alw26I | GTCTC | 1 cut(s) | 747 |
| AlwI | GGATC | 2 cut(s) | 30, 562 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| AoxI | GGCC | 4 cut(s) | 34, 41, 78, 714 |
| ApeKI | GCWGC | 4 cut(s) | 178, 574, 680, 806 |
| Asp718I | GGTACC | 1 cut(s) | 143 |
| AspS9I | GGNCC | 3 cut(s) | 34, 41, 636 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 1 cut(s) | 91 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| AvaII | GGWCC | 1 cut(s) | 636 |
| BanI | GGYRCC | 1 cut(s) | 143 |
| BanII | GRGCYC | 1 cut(s) | 168 |
| BbsI | GAAGAC | 2 cut(s) | 283, 493 |
| Bbv12I | GWGCWC | 2 cut(s) | 168, 469 |
| BbvI | GCAGC | 3 cut(s) | 165, 586, 667 |
| BccI | CCATC | 2 cut(s) | 146, 415 |
| BceAI | ACGGC | 2 cut(s) | 92, 387 |
| BciT130I | CCWGG | 3 cut(s) | 55, 395, 692 |
| BciVI | GTATCC | 1 cut(s) | 211 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 1 cut(s) | 747 |
| BfaI | CTAG | 1 cut(s) | 423 |
| BfuI | GTATCC | 1 cut(s) | 211 |
| BglII | AGATCT | 1 cut(s) | 607 |
| BisI | GCNGC | 5 cut(s) | 37, 179, 575, 681, 807 |
| BlpI | GCTNAGC | 1 cut(s) | 297 |
| BlsI | GCNGC | 5 cut(s) | 38, 180, 576, 682, 808 |
| BmcAI | AGTACT | 1 cut(s) | 801 |
| Bme1390I | CCNGG | 4 cut(s) | 20, 55, 395, 692 |
| Bme18I | GGWCC | 1 cut(s) | 636 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 494 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 3 cut(s) | 34, 41, 636 |
| BmiI | GGNNCC | 2 cut(s) | 145, 637 |
| BmrFI | CCNGG | 4 cut(s) | 20, 55, 395, 692 |
| BmsI | GCATC | 1 cut(s) | 283 |
| BpiI | GAAGAC | 2 cut(s) | 283, 493 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 297 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 4 cut(s) | 37, 75, 393, 690 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 25, 43, 76, 712 |
| Bse118I | RCCGGY | 1 cut(s) | 43 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseBI | CCWGG | 3 cut(s) | 55, 395, 692 |
| BseDI | CCNNGG | 4 cut(s) | 37, 75, 393, 690 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 25, 43, 76, 712 |
| BseMII | CTCAG | 3 cut(s) | 317, 351, 456 |
| BseXI | GCAGC | 3 cut(s) | 165, 586, 667 |
| BsgI | GTGCAG | 1 cut(s) | 164 |
| Bsh1236I | CGCG | 2 cut(s) | 39, 171 |
| BshFI | GGCC | 4 cut(s) | 36, 43, 80, 716 |
| BshNI | GGYRCC | 1 cut(s) | 143 |
| BsiHKAI | GWGCWC | 2 cut(s) | 168, 469 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 3 cut(s) | 19, 44, 84 |
| BslFI | GGGAC | 2 cut(s) | 649, 685 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 25, 43, 76, 712 |
| BsmAI | GTCTC | 1 cut(s) | 747 |
| BsmBI | CGTCTC | 1 cut(s) | 747 |
| BsmFI | GGGAC | 2 cut(s) | 649, 685 |
| BsnI | GGCC | 4 cut(s) | 36, 43, 80, 716 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp1286I | GDGCHC | 2 cut(s) | 168, 469 |
| Bsp143I | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 297 |
| BspACI | CCGC | 6 cut(s) | 32, 37, 39, 105, 169, 320 |
| BspANI | GGCC | 4 cut(s) | 36, 43, 80, 716 |
| BspCNI | CTCAG | 3 cut(s) | 318, 352, 455 |
| BspFNI | CGCG | 2 cut(s) | 39, 171 |
| BspHI | TCATGA | 1 cut(s) | 625 |
| BspLI | GGNNCC | 2 cut(s) | 145, 637 |
| BspPI | GGATC | 2 cut(s) | 30, 562 |
| BspT107I | GGYRCC | 1 cut(s) | 143 |
| BsrFI | RCCGGY | 1 cut(s) | 43 |
| BssAI | RCCGGY | 1 cut(s) | 43 |
| BssECI | CCNNGG | 4 cut(s) | 37, 75, 393, 690 |
| BssMI | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| BssT1I | CCWWGG | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 3 cut(s) | 55, 395, 692 |
| BstC8I | GCNNGC | 5 cut(s) | 34, 41, 303, 465, 755 |
| BstDEI | CTNAG | 4 cut(s) | 297, 326, 360, 442 |
| BstDSI | CCRYGG | 1 cut(s) | 37 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 710 |
| BstFNI | CGCG | 2 cut(s) | 39, 171 |
| BstKTI | GATC | 7 cut(s) | 25, 99, 256, 570, 610, 645, 734 |
| BstMAI | GTCTC | 1 cut(s) | 747 |
| BstMBI | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 302, 686 |
| BstNI | CCWGG | 3 cut(s) | 55, 395, 692 |
| BstSCI | CCNGG | 4 cut(s) | 18, 53, 393, 690 |
| BstUI | CGCG | 2 cut(s) | 39, 171 |
| BstV1I | GCAGC | 3 cut(s) | 165, 586, 667 |
| BstV2I | GAAGAC | 2 cut(s) | 283, 493 |
| BstX2I | RGATCY | 3 cut(s) | 22, 567, 607 |
| BstYI | RGATCY | 3 cut(s) | 22, 567, 607 |
| BsuI | GTATCC | 1 cut(s) | 211 |
| BsuRI | GGCC | 4 cut(s) | 36, 43, 80, 716 |
| BtgI | CCRYGG | 1 cut(s) | 37 |
| BtsI | GCAGTG | 1 cut(s) | 417 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 5 cut(s) | 34, 41, 303, 465, 755 |
| CciI | TCATGA | 1 cut(s) | 625 |
| Cfr10I | RCCGGY | 1 cut(s) | 43 |
| Cfr13I | GGNCC | 3 cut(s) | 34, 41, 636 |
| Cfr42I | CCGCGG | 1 cut(s) | 40 |
| Csp6I | GTAC | 3 cut(s) | 144, 323, 800 |
| CviAII | CATG | 3 cut(s) | 626, 640, 677 |
| CviQI | GTAC | 3 cut(s) | 144, 323, 800 |
| DdeI | CTNAG | 4 cut(s) | 297, 326, 360, 442 |
| DpnI | GATC | 7 cut(s) | 24, 98, 255, 569, 609, 644, 733 |
| DpnII | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| DraI | TTTAAA | 1 cut(s) | 604 |
| DriI | GACNNNNNGTC | 1 cut(s) | 494 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 494 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 1 cut(s) | 75 |
| Eco147I | AGGCCT | 1 cut(s) | 716 |
| Eco24I | GRGCYC | 1 cut(s) | 168 |
| Eco32I | GATATC | 1 cut(s) | 652 |
| Eco47I | GGWCC | 1 cut(s) | 636 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 1 cut(s) | 207 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 710 |
| EcoRII | CCWGG | 3 cut(s) | 53, 393, 690 |
| EcoRV | GATATC | 1 cut(s) | 652 |
| EcoT14I | CCWWGG | 1 cut(s) | 75 |
| EcoT38I | GRGCYC | 1 cut(s) | 168 |
| ErhI | CCWWGG | 1 cut(s) | 75 |
| Esp3I | CGTCTC | 1 cut(s) | 747 |
| FaeI | CATG | 3 cut(s) | 629, 643, 680 |
| FaiI | YATR | 6 cut(s) | 198, 376, 378, 627, 641, 678 |
| FaqI | GGGAC | 2 cut(s) | 649, 685 |
| FatI | CATG | 3 cut(s) | 625, 639, 676 |
| FauI | CCCGC | 2 cut(s) | 25, 32 |
| FauNDI | CATATG | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 5 cut(s) | 37, 179, 575, 681, 807 |
| FriOI | GRGCYC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 5 cut(s) | 37, 179, 575, 681, 807 |
| FspBI | CTAG | 1 cut(s) | 423 |
| GluI | GCNGC | 5 cut(s) | 37, 179, 575, 681, 807 |
| HaeIII | GGCC | 4 cut(s) | 36, 43, 80, 716 |
| HapII | CCGG | 3 cut(s) | 19, 44, 84 |
| Hin1II | CATG | 3 cut(s) | 629, 643, 680 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HindIII | AAGCTT | 1 cut(s) | 299 |
| HinfI | GANTC | 3 cut(s) | 451, 479, 656 |
| HpaII | CCGG | 3 cut(s) | 19, 44, 84 |
| HphI | GGTGA | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 2 cut(s) | 114, 133 |
| Hpy188I | TCNGA | 6 cut(s) | 123, 226, 265, 339, 445, 747 |
| Hpy188III | TCNNGA | 6 cut(s) | 11, 26, 94, 455, 483, 626 |
| Hpy8I | GTNNAC | 2 cut(s) | 114, 133 |
| HpyAV | CCTTC | 2 cut(s) | 277, 706 |
| HpyCH4IV | ACGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 4 cut(s) | 181, 290, 305, 683 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 302, 686 |
| HpyF3I | CTNAG | 4 cut(s) | 297, 326, 360, 442 |
| HpySE526I | ACGT | 1 cut(s) | 116 |
| Hsp92II | CATG | 3 cut(s) | 629, 643, 680 |
| KpnI | GGTACC | 1 cut(s) | 147 |
| KspI | CCGCGG | 1 cut(s) | 40 |
| Kzo9I | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| LmnI | GCTCC | 2 cut(s) | 171, 385 |
| Lsp1109I | GCAGC | 3 cut(s) | 165, 586, 667 |
| LweI | GCATC | 1 cut(s) | 283 |
| MaeI | CTAG | 1 cut(s) | 423 |
| MaeII | ACGT | 1 cut(s) | 116 |
| MaeIII | GTNAC | 1 cut(s) | 436 |
| MalI | GATC | 7 cut(s) | 24, 98, 255, 569, 609, 644, 733 |
| MboI | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| MboII | GAAGA | 3 cut(s) | 288, 395, 498 |
| MflI | RGATCY | 3 cut(s) | 22, 567, 607 |
| MhlI | GDGCHC | 2 cut(s) | 168, 469 |
| MluCI | AATT | 4 cut(s) | 206, 516, 579, 774 |
| MlyI | GAGTC | 1 cut(s) | 650 |
| MnlI | CCTC | 9 cut(s) | 91, 117, 357, 451, 487, 523, 535, 640, 727 |
| MseI | TTAA | 5 cut(s) | 234, 270, 525, 603, 811 |
| MslI | CAYNNNNRTG | 2 cut(s) | 107, 264 |
| MspA1I | CMGCKG | 2 cut(s) | 39, 359 |
| MspI | CCGG | 3 cut(s) | 19, 44, 84 |
| MspR9I | CCNGG | 4 cut(s) | 20, 55, 395, 692 |
| MvaI | CCWGG | 3 cut(s) | 55, 395, 692 |
| MvnI | CGCG | 2 cut(s) | 39, 171 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 302, 686 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeI | CATATG | 1 cut(s) | 376 |
| NdeII | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| NlaIII | CATG | 3 cut(s) | 629, 643, 680 |
| NlaIV | GGNNCC | 2 cut(s) | 145, 637 |
| OliI | CACNNNNGTG | 1 cut(s) | 107 |
| PagI | TCATGA | 1 cut(s) | 625 |
| PceI | AGGCCT | 1 cut(s) | 716 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 651 |
| PfeI | GAWTC | 2 cut(s) | 451, 479 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 76 |
| PfoI | TCCNGGA | 1 cut(s) | 18 |
| PkrI | GCNGC | 5 cut(s) | 38, 180, 576, 682, 808 |
| PleI | GAGTC | 1 cut(s) | 650 |
| PpsI | GAGTC | 1 cut(s) | 650 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| Psp6I | CCWGG | 3 cut(s) | 53, 393, 690 |
| PspGI | CCWGG | 3 cut(s) | 53, 393, 690 |
| PspN4I | GGNNCC | 2 cut(s) | 145, 637 |
| PspPI | GGNCC | 3 cut(s) | 34, 41, 636 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 543, 575 |
| PsuI | RGATCY | 3 cut(s) | 22, 567, 607 |
| PvuII | CAGCTG | 1 cut(s) | 359 |
| RsaI | GTAC | 3 cut(s) | 145, 324, 801 |
| RsaNI | GTAC | 3 cut(s) | 144, 323, 800 |
| RseI | CAYNNNNRTG | 2 cut(s) | 107, 264 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SacII | CCGCGG | 1 cut(s) | 40 |
| SaqAI | TTAA | 5 cut(s) | 234, 270, 525, 603, 811 |
| SatI | GCNGC | 5 cut(s) | 37, 179, 575, 681, 807 |
| Sau3AI | GATC | 7 cut(s) | 22, 96, 253, 567, 607, 642, 731 |
| Sau96I | GGNCC | 3 cut(s) | 34, 41, 636 |
| ScaI | AGTACT | 1 cut(s) | 801 |
| SchI | GAGTC | 1 cut(s) | 650 |
| ScrFI | CCNGG | 4 cut(s) | 20, 55, 395, 692 |
| SduI | GDGCHC | 2 cut(s) | 168, 469 |
| SfaNI | GCATC | 1 cut(s) | 283 |
| Sfr303I | CCGCGG | 1 cut(s) | 40 |
| SgrBI | CCGCGG | 1 cut(s) | 40 |
| SinI | GGWCC | 1 cut(s) | 636 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 107, 264 |
| Sse9I | AATT | 4 cut(s) | 206, 516, 579, 774 |
| SseBI | AGGCCT | 1 cut(s) | 716 |
| SsiI | CCGC | 6 cut(s) | 32, 37, 39, 105, 169, 320 |
| SspI | AATATT | 2 cut(s) | 664, 768 |
| SspMI | CTAG | 1 cut(s) | 423 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| StuI | AGGCCT | 1 cut(s) | 716 |
| StyD4I | CCNGG | 4 cut(s) | 18, 53, 393, 690 |
| StyI | CCWWGG | 1 cut(s) | 75 |
| TaiI | ACGT | 1 cut(s) | 119 |
| TaqI | TCGA | 4 cut(s) | 482, 540, 645, 654 |
| TasI | AATT | 4 cut(s) | 206, 516, 579, 774 |
| TatI | WGTACW | 1 cut(s) | 799 |
| TauI | GCSGC | 1 cut(s) | 39 |
| TfiI | GAWTC | 2 cut(s) | 451, 479 |
| Tru1I | TTAA | 5 cut(s) | 234, 270, 525, 603, 811 |
| Tru9I | TTAA | 5 cut(s) | 234, 270, 525, 603, 811 |
| TscAI | CASTG | 1 cut(s) | 424 |
| TseI | GCWGC | 4 cut(s) | 178, 574, 680, 806 |
| TspDTI | ATGAA | 3 cut(s) | 528, 614, 642 |
| TspRI | CASTG | 1 cut(s) | 424 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 76 |
| VpaK11BI | GGWCC | 1 cut(s) | 636 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 710 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 578 |
| XspI | CTAG | 1 cut(s) | 423 |
| ZrmI | AGTACT | 1 cut(s) | 801 |