Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

50353920 .. 50355940

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0373800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCTTCCATGACCATGACAGCCTCATTCCTAGCCTCAACCATCACCAAACCTTCAACTCCCCGCAGGAGCCTCATTGTGGCCAAGGCCTCAAGAGCCCCGGAAGCCGAAAAGGTCACCGTGGAAATGAAGAAGGACAAGGAAGAGAACAGCAGTGGGAGGAGGGATTTGATCTTTGCTGCTGCTGCTGCTGCTGCGTGCTCCATTGCCAAGGTTGCCATGGCTGATGAACCTGAGCGTGGGACTCCAGCAGCCAAGAAGAAGTATGCTCCAGTTTGTGTCACAATGCCTACTGCTCGTATCTGCCGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

104

Amino Acids

11.07

Weight (kDa)

9.89

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 307
AcoI	YGGCCR	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	79, 239
AgsI	TTSAA	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	81, 87
ApeKI	GCWGC	7 cut(s)	179, 182, 185, 188, 191, 194, 251
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	37, 109
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	7 cut(s)	166, 169, 172, 175, 178, 181, 263
BccI	CCATC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	8 cut(s)	180, 183, 186, 189, 192, 195, 252, 307
BlsI	GCNGC	8 cut(s)	181, 184, 187, 190, 193, 196, 253, 308
Bme1390I	CCNGG	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	231, 255
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	84, 99, 120, 210, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 239
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	5 cut(s)	84, 99, 120, 210, 219
BseLI	CCNNNNNNNGG	2 cut(s)	79, 239
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	7 cut(s)	166, 169, 172, 175, 178, 181, 263
BshFI	GGCC	2 cut(s)	83, 89
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	79, 239
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	83, 89
Bsp1286I	GDGCHC	2 cut(s)	100, 203
Bsp143I	GATC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	2 cut(s)	64, 307
BspANI	GGCC	2 cut(s)	83, 89
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	5 cut(s)	84, 99, 120, 210, 219
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	84, 210, 219
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	2 cut(s)	120, 219
BstEII	GGTNACC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 104, 185, 188, 191, 194, 215
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	7 cut(s)	166, 169, 172, 175, 178, 181, 263
BsuRI	GGCC	2 cut(s)	83, 89
BtgI	CCRYGG	2 cut(s)	120, 219
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	199
CviAII	CATG	3 cut(s)	10, 16, 220
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	3 cut(s)	84, 210, 219
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	100
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoT14I	CCWWGG	3 cut(s)	84, 210, 219
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	3 cut(s)	84, 210, 219
FaeI	CATG	3 cut(s)	13, 19, 223
FaiI	YATR	4 cut(s)	11, 17, 221, 267
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	3 cut(s)	9, 15, 219
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	8 cut(s)	180, 183, 186, 189, 192, 195, 252, 307
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	8 cut(s)	180, 183, 186, 189, 192, 195, 252, 307
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	8 cut(s)	180, 183, 186, 189, 192, 195, 252, 307
GsuI	CTGGAG	2 cut(s)	231, 255
HaeIII	GGCC	2 cut(s)	83, 89
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	13, 19, 223
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	37, 109
Hpy188III	TCNNGA	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	63, 127
HpyCH4III	ACNGT	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 104, 185, 188, 191, 194, 215
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	13, 19, 223
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	69, 206, 274
LpnPI	CCDG	5 cut(s)	52, 114, 246, 261, 285
Lsp1109I	GCAGC	7 cut(s)	166, 169, 172, 175, 178, 181, 263
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	115, 280
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	142, 155, 271
MhlI	GDGCHC	2 cut(s)	100, 203
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	6 cut(s)	34, 46, 83, 100, 153, 156
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	7 cut(s)	95, 104, 185, 188, 191, 194, 215
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	13, 19, 223
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	115, 280
PceI	AGGCCT	1 cut(s)	89
PkrI	GCNGC	8 cut(s)	181, 184, 187, 190, 193, 196, 253, 308
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	8 cut(s)	180, 183, 186, 189, 192, 195, 252, 307
Sau3AI	GATC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	100, 203
SetI	ASST	4 cut(s)	55, 117, 216, 235
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	64, 307
SspMI	CTAG	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	3 cut(s)	84, 210, 219
TaaI	ACNGT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	309
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	115, 280
TseI	GCWGC	7 cut(s)	179, 182, 185, 188, 191, 194, 251
Tsp45I	GTSAC	2 cut(s)	115, 280
TspDTI	ATGAA	2 cut(s)	143, 243
TspRI	CASTG	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.