Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

11318759 .. 11319881

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTTATACGCTTTTTTTACATCGCATGCAATTCCAACCGATTTAATAGTGGTGATGTAAATGAACAGATTTCTAGTAGTGACGATTCCAACACCAAAGTAGCAGTGGACTTGAGACGTGATCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCGACAATCAAAGGGTTTCTAAGCAACATGGCAAGAGAGAAGCCTATAACCTACTCAGCAAAGCAAATTGCAGAATTCACACATAACTATAACTACTCTAATATATTAGGTTCAGGTGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTACAAGTGGCTGTCAAGGTCCTTACGAACAACAATAGGGCTAAGATAGTTGAAGAGCAGTTTATGGCAGAAGTTGGAGCCTTGGGAAGAACTTACCATGTCAATTTGGTTAGACTCTATGGCTTCTGCTTCGCCCCCGAAATGAAAGCCCTTGTCTATGAGTACATGGAGAATGGTTCTCTTGACAAGTTATTGTTCAGTGACAATGGAGAAATAGATTTAGGGAAGCTTCATGTTATTGCAGTCCAAACTGCAAAAAGGGTTGCGGATTTTGGACTCACCAGGCTTTGCAATAGAGGGAGTAGTCGAATGCTCCTAACCAATTTCAGAGGGACAGCCGGATATGCAGCCCCAGAGATGTGGAAGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATGTGAGCGAGTCCCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

342

Amino Acids

38.88

Weight (kDa)

7.07

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	83 - 189	1.7e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	86 - 191	1e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	191 - 321	1.1e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	192 - 323	1.6e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	1 cut(s)	866
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	2 cut(s)	318, 479
AfiI	CCNNNNNNNGG	1 cut(s)	789
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	2 cut(s)	368, 1010
AjiI	CACGTC	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	147, 596
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	3 cut(s)	137, 544, 905
AluI	AGCT	3 cut(s)	137, 544, 905
Alw26I	GTCTC	3 cut(s)	109, 780, 864
AlwI	GGATC	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	783
ApeKI	GCWGC	2 cut(s)	662, 836
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	65, 586, 918
AvaI	CYCGRG	1 cut(s)	783
AvaII	GGWCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	760
BbvI	GCAGC	2 cut(s)	674, 848
BciT130I	CCWGG	2 cut(s)	149, 598
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	109, 780, 864
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	663, 837
BlsI	GCNGC	2 cut(s)	664, 838
Bme1390I	CCNGG	2 cut(s)	149, 598
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	783
BmgBI	CACGTC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	2 cut(s)	149, 598
BpiI	GAAGAC	1 cut(s)	760
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	147, 396
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 979, 1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse1I	ACTGG	2 cut(s)	131, 794
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	2 cut(s)	149, 598
BseDI	CCNNGG	2 cut(s)	147, 396
BseGI	GGATG	1 cut(s)	897
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	2 cut(s)	144, 228
BseNI	ACTGG	2 cut(s)	131, 794
BseXI	GCAGC	2 cut(s)	674, 848
BsiHKCI	CYCGRG	1 cut(s)	783
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	2 cut(s)	661, 766
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	3 cut(s)	109, 780, 864
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	661, 766
BsmI	GAATGC	3 cut(s)	630, 915, 922
BsoBI	CYCGRG	1 cut(s)	783
Bsp143I	GATC	2 cut(s)	121, 858
BspACI	CCGC	1 cut(s)	581
BspCNI	CTCAG	2 cut(s)	145, 227
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	866
BspQI	GCTCTTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	131, 794
BssECI	CCNNGG	2 cut(s)	147, 396
BssMI	GATC	2 cut(s)	121, 858
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	149, 598
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	2 cut(s)	363, 858
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	6 cut(s)	153, 179, 214, 357, 798, 832
BstF5I	GGATG	1 cut(s)	897
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	2 cut(s)	124, 861
BstMAI	GTCTC	3 cut(s)	109, 780, 864
BstMBI	GATC	2 cut(s)	121, 858
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	2 cut(s)	149, 598
BstNSI	RCATGY	2 cut(s)	30, 817
BstSCI	CCNGG	2 cut(s)	147, 596
BstV1I	GCAGC	2 cut(s)	674, 848
BstV2I	GAAGAC	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	897
BtsI	GCAGTG	2 cut(s)	111, 757
BtsIMutI	CAGTG	3 cut(s)	111, 520, 757
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	317, 478
CviAII	CATG	8 cut(s)	27, 187, 413, 481, 548, 807, 814, 946
CviQI	GTAC	2 cut(s)	317, 478
DdeI	CTNAG	6 cut(s)	153, 179, 214, 357, 798, 832
DpnI	GATC	2 cut(s)	123, 860
DpnII	GATC	2 cut(s)	121, 858
Eam1104I	CTCTTC	2 cut(s)	363, 858
EarI	CTCTTC	2 cut(s)	363, 858
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	147, 596
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	8 cut(s)	30, 190, 416, 484, 551, 810, 817, 949
FaqI	GGGAC	2 cut(s)	661, 766
FatI	CATG	8 cut(s)	26, 186, 412, 480, 547, 806, 813, 945
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	663, 837
FokI	GGATG	1 cut(s)	904
Fsp4HI	GCNGC	2 cut(s)	663, 837
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	2 cut(s)	663, 837
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	8 cut(s)	30, 190, 416, 484, 551, 810, 817, 949
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	6 cut(s)	86, 143, 429, 591, 694, 779
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	3 cut(s)	65, 586, 918
Hpy166II	GTNNAC	3 cut(s)	109, 712, 804
Hpy188I	TCNGA	2 cut(s)	162, 644
Hpy188III	TCNNGA	4 cut(s)	305, 497, 783, 946
Hpy8I	GTNNAC	3 cut(s)	109, 712, 804
Hpy99I	CGWCG	1 cut(s)	767
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	9 cut(s)	30, 230, 557, 569, 606, 662, 915, 961, 1018
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	6 cut(s)	153, 179, 214, 357, 798, 832
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	8 cut(s)	30, 190, 416, 484, 551, 810, 817, 949
HspAI	GCGC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	121, 858
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	392, 633
Lsp1109I	GCAGC	2 cut(s)	674, 848
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	3 cut(s)	80, 515, 691
MalI	GATC	2 cut(s)	123, 860
MboI	GATC	2 cut(s)	121, 858
MboII	GAAGA	7 cut(s)	380, 414, 719, 759, 762, 765, 875
MluCI	AATT	7 cut(s)	31, 125, 225, 233, 418, 637, 984
MlyI	GAGTC	4 cut(s)	423, 585, 688, 788
MmeI	TCCRAC	6 cut(s)	60, 114, 185, 370, 724, 948
MnlI	CCTC	6 cut(s)	605, 638, 882, 951, 964, 1005
MseI	TTAA	2 cut(s)	45, 896
MslI	CAYNNNNRTG	1 cut(s)	702
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	2 cut(s)	149, 598
Mva1269I	GAATGC	3 cut(s)	630, 915, 922
MvaI	CCWGG	2 cut(s)	149, 598
MwoI	GCNNNNNNNGC	1 cut(s)	659
NdeII	GATC	2 cut(s)	121, 858
NlaIII	CATG	8 cut(s)	30, 190, 416, 484, 551, 810, 817, 949
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	3 cut(s)	80, 515, 691
NspI	RCATGY	2 cut(s)	30, 817
OliI	CACNNNNGTG	1 cut(s)	702
PaeI	GCATGC	1 cut(s)	30
PagI	TCATGA	1 cut(s)	945
PciI	ACATGT	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	363
PctI	GAATGC	3 cut(s)	630, 915, 922
PfeI	GAWTC	2 cut(s)	86, 143
PkrI	GCNGC	2 cut(s)	664, 838
PleI	GAGTC	4 cut(s)	423, 585, 688, 787
PpsI	GAGTC	4 cut(s)	423, 585, 688, 787
PpuMI	RGGWCCY	1 cut(s)	334
PscI	ACATGT	1 cut(s)	813
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	147, 596
PspGI	CCWGG	2 cut(s)	147, 596
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	318, 479
RsaNI	GTAC	2 cut(s)	317, 478
RseI	CAYNNNNRTG	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	45, 896
SatI	GCNGC	2 cut(s)	663, 837
Sau3AI	GATC	2 cut(s)	121, 858
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	4 cut(s)	423, 585, 688, 788
ScrFI	CCNGG	2 cut(s)	149, 598
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	7 cut(s)	31, 125, 225, 233, 418, 637, 984
SsiI	CCGC	1 cut(s)	581
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	147, 596
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	306, 622, 861
TasI	AATT	7 cut(s)	31, 125, 225, 233, 418, 637, 984
TatI	WGTACW	2 cut(s)	316, 477
TfiI	GAWTC	2 cut(s)	86, 143
Tru1I	TTAA	2 cut(s)	45, 896
Tru9I	TTAA	2 cut(s)	45, 896
TscAI	CASTG	3 cut(s)	111, 520, 764
TseFI	GTSAC	3 cut(s)	80, 515, 691
TseI	GCWGC	2 cut(s)	662, 836
Tsp45I	GTSAC	3 cut(s)	80, 515, 691
TspDTI	ATGAA	3 cut(s)	78, 473, 536
TspRI	CASTG	3 cut(s)	111, 520, 764
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	30, 817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.