Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 57, 177 |
| AciI | CCGC | 1 cut(s) | 92 |
| AclWI | GGATC | 1 cut(s) | 52 |
| AcsI | RAATTY | 1 cut(s) | 149 |
| AfaI | GTAC | 2 cut(s) | 114, 254 |
| AgsI | TTSAA | 3 cut(s) | 222, 279, 324 |
| AhlI | ACTAGT | 1 cut(s) | 172 |
| AluBI | AGCT | 2 cut(s) | 70, 270 |
| AluI | AGCT | 2 cut(s) | 70, 270 |
| AlwI | GGATC | 1 cut(s) | 52 |
| ApeKI | GCWGC | 1 cut(s) | 27 |
| ApoI | RAATTY | 1 cut(s) | 149 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 149 |
| AsuHPI | GGTGA | 2 cut(s) | 106, 140 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 259, 291 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| BbvCI | CCTCAGC | 1 cut(s) | 76 |
| BbvI | GCAGC | 1 cut(s) | 14 |
| BccI | CCATC | 4 cut(s) | 89, 113, 114, 119 |
| BcuI | ACTAGT | 1 cut(s) | 172 |
| BfaI | CTAG | 3 cut(s) | 116, 173, 257 |
| BisI | GCNGC | 1 cut(s) | 28 |
| BlsI | GCNGC | 1 cut(s) | 29 |
| BmcAI | AGTACT | 1 cut(s) | 114 |
| BmsI | GCATC | 1 cut(s) | 379 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| Bpu10I | CCTNAGC | 1 cut(s) | 76 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseXI | GCAGC | 1 cut(s) | 14 |
| BsgI | GTGCAG | 1 cut(s) | 407 |
| Bsp143I | GATC | 2 cut(s) | 44, 167 |
| BspACI | CCGC | 1 cut(s) | 92 |
| BspCNI | CTCAG | 1 cut(s) | 89 |
| BspHI | TCATGA | 1 cut(s) | 373 |
| BspPI | GGATC | 1 cut(s) | 52 |
| BssMI | GATC | 2 cut(s) | 44, 167 |
| Bst4CI | ACNGT | 1 cut(s) | 448 |
| BstC8I | GCNNGC | 1 cut(s) | 422 |
| BstDEI | CTNAG | 1 cut(s) | 76 |
| BstKTI | GATC | 2 cut(s) | 47, 170 |
| BstMBI | GATC | 2 cut(s) | 44, 167 |
| BstV1I | GCAGC | 1 cut(s) | 14 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| BstX2I | RGATCY | 1 cut(s) | 44 |
| BstYI | RGATCY | 1 cut(s) | 44 |
| BtgZI | GCGATG | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 1 cut(s) | 422 |
| CciI | TCATGA | 1 cut(s) | 373 |
| CseI | GACGC | 1 cut(s) | 43 |
| Csp6I | GTAC | 2 cut(s) | 113, 253 |
| CviAII | CATG | 3 cut(s) | 22, 353, 374 |
| CviJI | RGCY | 6 cut(s) | 70, 80, 270, 275, 350, 420 |
| CviKI_1 | RGCY | 6 cut(s) | 70, 80, 270, 275, 350, 420 |
| CviQI | GTAC | 2 cut(s) | 113, 253 |
| DdeI | CTNAG | 1 cut(s) | 76 |
| DpnI | GATC | 2 cut(s) | 46, 169 |
| DpnII | GATC | 2 cut(s) | 44, 167 |
| EcoRI | GAATTC | 1 cut(s) | 149 |
| EcoT22I | ATGCAT | 2 cut(s) | 358, 372 |
| FaeI | CATG | 3 cut(s) | 25, 356, 377 |
| FatI | CATG | 3 cut(s) | 21, 352, 373 |
| FblI | GTMKAC | 2 cut(s) | 57, 177 |
| Fnu4HI | GCNGC | 1 cut(s) | 28 |
| Fsp4HI | GCNGC | 1 cut(s) | 28 |
| FspBI | CTAG | 3 cut(s) | 116, 173, 257 |
| GluI | GCNGC | 1 cut(s) | 28 |
| HgaI | GACGC | 1 cut(s) | 43 |
| Hin1II | CATG | 3 cut(s) | 25, 356, 377 |
| HinfI | GANTC | 2 cut(s) | 17, 293 |
| HphI | GGTGA | 2 cut(s) | 106, 140 |
| Hpy166II | GTNNAC | 3 cut(s) | 58, 178, 318 |
| Hpy188I | TCNGA | 1 cut(s) | 298 |
| Hpy188III | TCNNGA | 2 cut(s) | 48, 374 |
| Hpy8I | GTNNAC | 3 cut(s) | 58, 178, 318 |
| HpyAV | CCTTC | 1 cut(s) | 139 |
| HpyCH4III | ACNGT | 1 cut(s) | 448 |
| HpyCH4V | TGCA | 4 cut(s) | 30, 356, 370, 424 |
| HpyF3I | CTNAG | 1 cut(s) | 76 |
| Hsp92II | CATG | 3 cut(s) | 25, 356, 377 |
| Kzo9I | GATC | 2 cut(s) | 44, 167 |
| LpnPI | CCDG | 2 cut(s) | 33, 434 |
| Lsp1109I | GCAGC | 1 cut(s) | 14 |
| LweI | GCATC | 1 cut(s) | 379 |
| MaeI | CTAG | 3 cut(s) | 116, 173, 257 |
| MaeIII | GTNAC | 1 cut(s) | 230 |
| MalI | GATC | 2 cut(s) | 46, 169 |
| MboI | GATC | 2 cut(s) | 44, 167 |
| MboII | GAAGA | 2 cut(s) | 109, 397 |
| MflI | RGATCY | 1 cut(s) | 44 |
| MluCI | AATT | 2 cut(s) | 149, 308 |
| MlyI | GAGTC | 1 cut(s) | 11 |
| MnlI | CCTC | 4 cut(s) | 35, 85, 124, 164 |
| Mph1103I | ATGCAT | 2 cut(s) | 358, 372 |
| MroXI | GAANNNNTTC | 1 cut(s) | 149 |
| NdeII | GATC | 2 cut(s) | 44, 167 |
| NlaIII | CATG | 3 cut(s) | 25, 356, 377 |
| NmuCI | GTSAC | 1 cut(s) | 230 |
| NsiI | ATGCAT | 2 cut(s) | 358, 372 |
| PagI | TCATGA | 1 cut(s) | 373 |
| PdmI | GAANNNNTTC | 1 cut(s) | 149 |
| PfeI | GAWTC | 1 cut(s) | 293 |
| PkrI | GCNGC | 1 cut(s) | 29 |
| PleI | GAGTC | 1 cut(s) | 11 |
| PpsI | GAGTC | 1 cut(s) | 11 |
| PsuI | RGATCY | 1 cut(s) | 44 |
| RsaI | GTAC | 2 cut(s) | 114, 254 |
| RsaNI | GTAC | 2 cut(s) | 113, 253 |
| SatI | GCNGC | 1 cut(s) | 28 |
| Sau3AI | GATC | 2 cut(s) | 44, 167 |
| ScaI | AGTACT | 1 cut(s) | 114 |
| SchI | GAGTC | 1 cut(s) | 11 |
| SetI | ASST | 5 cut(s) | 72, 258, 268, 272, 346 |
| SfaNI | GCATC | 1 cut(s) | 379 |
| SpeI | ACTAGT | 1 cut(s) | 172 |
| Sse9I | AATT | 2 cut(s) | 149, 308 |
| SsiI | CCGC | 1 cut(s) | 92 |
| SspI | AATATT | 1 cut(s) | 282 |
| SspMI | CTAG | 3 cut(s) | 116, 173, 257 |
| TaaI | ACNGT | 1 cut(s) | 448 |
| TasI | AATT | 2 cut(s) | 149, 308 |
| TatI | WGTACW | 1 cut(s) | 112 |
| TfiI | GAWTC | 1 cut(s) | 293 |
| TseFI | GTSAC | 1 cut(s) | 230 |
| TseI | GCWGC | 1 cut(s) | 27 |
| Tsp45I | GTSAC | 1 cut(s) | 230 |
| TspDTI | ATGAA | 2 cut(s) | 174, 398 |
| XapI | RAATTY | 1 cut(s) | 149 |
| XmiI | GTMKAC | 2 cut(s) | 57, 177 |
| XmnI | GAANNNNTTC | 1 cut(s) | 149 |
| XspI | CTAG | 3 cut(s) | 116, 173, 257 |
| ZrmI | AGTACT | 1 cut(s) | 114 |
| Zsp2I | ATGCAT | 2 cut(s) | 358, 372 |